GNU bug report logs - #56158
[PATCH] gnu: Add r-assessorf.

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Package: guix-patches; Reported by: Mădălin Ionel Patrașcu <madalinionel.patrascu@HIDDEN>; Keywords: patch; dated Thu, 23 Jun 2022 09:44:02 UTC; Maintainer for guix-patches is guix-patches@HIDDEN.

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To: <guix-patches@HIDDEN>
Subject: [PATCH] gnu: Add r-assessorf.
Date: Thu, 23 Jun 2022 11:42:57 +0200
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* gnu/packages/bioconductor.scm (r-assessorf): New variable.
---
 gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..3f7743b0cb 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,35 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-assessorf
+  (package
+    (name "r-assessorf")
+    (version "1.14.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AssessORF" version))
+              (sha256
+               (base32
+                "1l87bpny9k3jbzbzmb9h2ijvblrj471gqv26fyzbvb3vr6y406z7"))))
+    (properties `((upstream-name . "AssessORF")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biostrings
+           r-decipher
+           r-genomicranges
+           r-iranges))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/AssessORF")
+    (synopsis "Assess gene predictions using proteomics and evolutionary conservation")
+    (description
+     "In order to assess the quality of a set of predicted genes for a genome,
+evidence must first be mapped to that genome.  Next, each gene must be categorized
+based on how strong the evidence is for or against that gene.  The @code{AssessORF}
+package provides the functions and class structures necessary for accomplishing
+those tasks, using proteomics hits and evolutionarily conserved start codons as
+the forms of evidence.")
+    (license license:gpl3)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
-- 
2.36.1





Acknowledgement sent to Mădălin Ionel Patrașcu <madalinionel.patrascu@HIDDEN>:
New bug report received and forwarded. Copy sent to guix-patches@HIDDEN. Full text available.
Report forwarded to guix-patches@HIDDEN:
bug#56158; Package guix-patches. Full text available.
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