GNU bug report logs - #56165
[PATCH] gnu: Add r-attract.

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Package: guix-patches;

Reported by: Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>

Date: Thu, 23 Jun 2022 11:56:01 UTC

Severity: normal

Tags: patch

Done: Ricardo Wurmus <rekado <at> elephly.net>

Bug is archived. No further changes may be made.

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Report forwarded to guix-patches <at> gnu.org:
bug#56165; Package guix-patches. (Thu, 23 Jun 2022 11:56:01 GMT) Full text and rfc822 format available.

Acknowledgement sent to Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>:
New bug report received and forwarded. Copy sent to guix-patches <at> gnu.org. (Thu, 23 Jun 2022 11:56:01 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-attract.
Date: Thu, 23 Jun 2022 13:54:42 +0200
* gnu/packages/bioconductor.scm (r-attract): New variable.
---
 gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..dcc9503a1b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,37 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-attract
+  (package
+    (name "r-attract")
+    (version "1.48.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "attract" version))
+              (sha256
+               (base32
+                "0f1fsv278kpnxvqg9qa5rw2k3zr8zws0ab73ldl60h6pv9cy8x82"))))
+    (properties `((upstream-name . "attract")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-annotationdbi
+           r-biobase
+           r-cluster
+           r-gostats
+           r-keggrest
+           r-limma
+           r-org-hs-eg-db
+           r-reactome-db))
+    (home-page "https://bioconductor.org/packages/attract")
+    (synopsis "Finding drivers of Kauffman's attractor landscape")
+    (description
+     "This package contains the functions to find the gene expression modules
+that represent the drivers of Kauffman's attractor landscape.  The modules are
+the core attractor pathways that discriminate between different cell types of
+groups of interest.  Each pathway has a set of synexpression groups, which show
+transcriptionally-coordinated changes in gene expression.")
+    (license license:lgpl2.0+)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
-- 
2.36.1





Reply sent to Ricardo Wurmus <rekado <at> elephly.net>:
You have taken responsibility. (Mon, 31 Oct 2022 20:41:02 GMT) Full text and rfc822 format available.

Notification sent to Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>:
bug acknowledged by developer. (Mon, 31 Oct 2022 20:41:03 GMT) Full text and rfc822 format available.

Message #10 received at 56165-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 56165-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-attract.
Date: Mon, 31 Oct 2022 21:39:52 +0100
Applied, thanks!

-- 
Ricardo




bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Tue, 29 Nov 2022 12:24:11 GMT) Full text and rfc822 format available.

This bug report was last modified 1 year and 119 days ago.

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