GNU bug report logs - #56186
[PATCH] gnu: Add python-deepdish.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Antero Mejr <antero <at> mailbox.org>
To: guix-patches <at> gnu.org
Subject: [PATCH] gnu: Add python-deepdish.
Date: Fri, 24 Jun 2022 12:50:33 +0000

* gnu/packages/python-science.scm (python-deepdish): New variable.
---
 gnu/packages/python-science.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 56f109e3d5..0f5403b36b 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1367,3 +1367,34 @@ (define-public python-gpy
 Python, from the Sheffield machine learning group.  GPy implements a range of
 machine learning algorithms based on GPs.")
     (license license:bsd-3)))
+
+(define-public python-deepdish
+  (package
+    (name "python-deepdish")
+    (version "0.3.7")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "deepdish" version))
+              (sha256
+               (base32
+                "1wqzwh3y0mjdyba5kfbvlamn561d3afz50zi712c7klkysz3mzva"))))
+    (arguments
+     (list #:phases #~(modify-phases %standard-phases
+                        (add-after 'unpack 'dont-vendor-six
+                          (lambda _
+                            (delete-file "deepdish/six.py")
+                            (substitute* "deepdish/io/hdf5io.py"
+                              (("from deepdish import six") "import six"))
+                            (substitute* "deepdish/io/ls.py"
+                              (("from deepdish import io, six, __version__")
+                               "from deepdish import io, __version__
+import six
+")))))))
+    (build-system python-build-system)
+    (native-inputs (list python-pandas))
+    (propagated-inputs (list python-numpy python-scipy python-six
+                             python-tables))
+    (home-page "https://github.com/uchicago-cs/deepdish")
+    (synopsis "Python library for HDF5 file saving and loading")
+    (description "HDF5 saving/loading and other data science tools.")
+    (license license:bsd-3)))
-- 
2.36.1

Message #10 received at 56186-done <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: Antero Mejr <antero <at> mailbox.org>
Cc: 56186-done <at> debbugs.gnu.org
Subject: Re: bug#56186: [PATCH] gnu: Add python-deepdish.
Date: Sun, 03 Jul 2022 13:11:12 +0200

[Message part 1 (text/plain, inline)]

Hi Antero,

Antero Mejr <antero <at> mailbox.org> skribis:

> * gnu/packages/python-science.scm (python-deepdish): New variable.

Applied with the changes below (inspired by ‘README.rst’), as per
<https://guix.gnu.org/manual/devel/en/html_node/Synopses-and-Descriptions.html>.

Thanks,
Ludo’.

[Message part 2 (text/x-patch, inline)]

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 135c6a99ff..747c84d493 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1396,5 +1396,10 @@ (define-public python-deepdish
                              python-tables))
     (home-page "https://github.com/uchicago-cs/deepdish")
     (synopsis "Python library for HDF5 file saving and loading")
-    (description "HDF5 saving/loading and other data science tools.")
+    (description
+     "Deepdish is a Python library to load and save HDF5 files.
+The primary feature of deepdish is its ability to save and load all kinds of
+data as HDF5.  It can save any Python data structure, offering the same ease
+of use as pickling or @code{numpy.save}, but with the language
+interoperability offered by HDF5.")
     (license license:bsd-3)))

Message #13 received at 56186 <at> debbugs.gnu.org (full text, mbox):

From: Maxime Devos <maximedevos <at> telenet.be>
To: Antero Mejr <antero <at> mailbox.org>, 56186 <at> debbugs.gnu.org
Subject: Re: [bug#56186] [PATCH] gnu: Add python-deepdish.
Date: Sat, 30 Jul 2022 22:54:01 +0200

[Message part 1 (text/plain, inline)]

On 24-06-2022 14:50, Antero Mejr via Guix-patches via wrote:

> +                        (add-after 'unpack 'dont-vendor-six
> +                          (lambda _
> +                            (delete-file "deepdish/six.py")
> +                            (substitute* "deepdish/io/hdf5io.py"
> +                              (("from deepdish import six") "import six"))
> +                            (substitute* "deepdish/io/ls.py"
> +                              (("from deepdish import io, six, __version__")
> +                               "from deepdish import io, __version__

If you move it to an origin snippet, then the result of "guix build 
--source" becomes 'cleaner' in the sense that it actually corresponds to 
what is built, could it be moved there?

Greetings,
Maxime.

[OpenPGP_0x49E3EE22191725EE.asc (application/pgp-keys, attachment)]

[OpenPGP_signature (application/pgp-signature, attachment)]

Message #16 received at 56186 <at> debbugs.gnu.org (full text, mbox):

From: Antero Mejr <antero <at> mailbox.org>
To: 56186 <at> debbugs.gnu.org
Cc: Antero Mejr <antero <at> mailbox.org>, maximedevos <at> telenet.be
Subject: [PATCH] gnu: Update python-deepdish package definition.
Date: Mon,  1 Aug 2022 15:34:39 -0400

* gnu/packages/python-science.scm (python-deepdish): Move code patch
to source snippet.
---
 gnu/packages/python-science.scm | 22 +++++++++-------------
 1 file changed, 9 insertions(+), 13 deletions(-)

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 57c9325f49..905de853e0 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1377,19 +1377,15 @@ (define-public python-deepdish
               (uri (pypi-uri "deepdish" version))
               (sha256
                (base32
-                "1wqzwh3y0mjdyba5kfbvlamn561d3afz50zi712c7klkysz3mzva"))))
-    (arguments
-     (list #:phases #~(modify-phases %standard-phases
-                        (add-after 'unpack 'dont-vendor-six
-                          (lambda _
-                            (delete-file "deepdish/six.py")
-                            (substitute* "deepdish/io/hdf5io.py"
-                              (("from deepdish import six") "import six"))
-                            (substitute* "deepdish/io/ls.py"
-                              (("from deepdish import io, six, __version__")
-                               "from deepdish import io, __version__
-import six
-")))))))
+                "1wqzwh3y0mjdyba5kfbvlamn561d3afz50zi712c7klkysz3mzva"))
+              (modules '((guix build utils)))
+              (snippet #~(begin (delete-file "deepdish/six.py")
+                                (substitute* "deepdish/io/hdf5io.py"
+                                  (("from deepdish import six") "import six"))
+                                (substitute* "deepdish/io/ls.py"
+                                  (("from deepdish import io, six, __version__")
+                                   "from deepdish import io, __version__
+import six"))))))
     (build-system python-build-system)
     (native-inputs (list python-pandas))
     (propagated-inputs (list python-numpy python-scipy python-six
-- 
2.37.1

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