GNU bug report logs - #56266
[PATCH] gnu: Add r-bader.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-bader.
Date: Mon, 27 Jun 2022 23:28:24 +0200

* gnu/packages/bioconductor.scm (r-bader): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..6d65cc1c1f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,30 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-bader
+  (package
+    (name "r-bader")
+    (version "1.34.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "BADER" version))
+              (sha256
+               (base32
+                "0i5x1r2ns1hxhqk5jyfqird81hck1hllvvgx5bn0rb5vl99g8spm"))))
+    (properties `((upstream-name . "BADER")))
+    (build-system r-build-system)
+    (home-page "https://bioconductor.org/packages/BADER")
+    (synopsis
+     "Bayesian analysis of differential expression in RNA sequencing data")
+    (description
+     "The @code{BADER} package is intended for the analysis of RNA sequencing
+data.  The algorithm fits a Bayesian hierarchical model for RNA sequencing count
+data.  @code{BADER} returns the posterior probability of differential expression
+for each gene between two groups A and B.  The joint posterior distribution of
+the variables in the model can be returned in the form of posterior samples,
+which can be used for further down-stream analyses such as gene set enrichment.")
+    (license license:gpl2)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
-- 
2.36.1

Message #10 received at 56266-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 56266-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-bader.
Date: Thu, 27 Oct 2022 15:45:32 +0200

Applied with minor changes, thank you!

-- 
Ricardo

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