GNU bug report logs - #56270
[PATCH] gnu: Add r-banocc.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-banocc.
Date: Tue, 28 Jun 2022 00:42:13 +0200

* gnu/packages/bioconductor.scm (r-banocc): New variable.
---
 gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..61ce070559 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,34 @@ (define-public r-aneufinder
 sequencing data.")
     (license license:artistic2.0)))
 
+(define-public r-banocc
+  (package
+    (name "r-banocc")
+    (version "1.20.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "banocc" version))
+              (sha256
+               (base32
+                "10vaggq1w5jkxd8r2k1mhymzvb7x3h8afwn2pvmcpj022ka7xhbx"))))
+    (properties `((upstream-name . "banocc")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-coda
+           r-mvtnorm
+           r-rstan
+           r-stringr))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/banocc")
+    (synopsis "Bayesian analysis of compositional covariance")
+    (description
+     "@code{BAnOCC} is a package designed for compositional data, where each
+sample sums to one.  It infers the approximate covariance of the unconstrained
+data using a Bayesian model coded with @code{rstan}.  It provides as output the
+@code{stanfit} object as well as posterior median and credible interval estimates
+for each correlation element.")
+    (license license:expat)))
+
 (define-public r-biocversion
   (package
     (name "r-biocversion")

base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
-- 
2.36.1

Message #10 received at 56270-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 56270-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-banocc.
Date: Thu, 27 Oct 2022 16:02:26 +0200

Applied with minor changes.  Thank you!

-- 
Ricardo

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