GNU bug report logs -
#56279
[PATCH] gnu: Add r-barcodetrackr.
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Report forwarded
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guix-patches <at> gnu.org
:
bug#56279
; Package
guix-patches
.
(Tue, 28 Jun 2022 15:02:01 GMT)
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Acknowledgement sent
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
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(Tue, 28 Jun 2022 15:02:01 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-barcodetrackr): New variable.
---
gnu/packages/bioconductor.scm | 42 +++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1e87b190c2..dd3d813398 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2029,6 +2029,48 @@ (define-public r-aneufinder
sequencing data.")
(license license:artistic2.0)))
+(define-public r-barcodetrackr
+ (package
+ (name "r-barcodetrackr")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "barcodetrackR" version))
+ (sha256
+ (base32
+ "0yxa15xkgqazw31vq4wm8v747bw4qb18m6i602pvynk0n5bgg3d3"))))
+ (properties `((upstream-name . "barcodetrackR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-circlize
+ r-cowplot
+ r-dplyr
+ r-ggdendro
+ r-ggplot2
+ r-ggridges
+ r-magrittr
+ r-plyr
+ r-proxy
+ r-rcolorbrewer
+ r-rlang
+ r-s4vectors
+ r-scales
+ r-shiny
+ r-summarizedexperiment
+ r-tibble
+ r-tidyr
+ r-vegan
+ r-viridis))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/dunbarlabNIH/barcodetrackR")
+ (synopsis "Functions for analyzing cellular barcoding data")
+ (description
+ "This package @code{barcodetrackR} is developed for the analysis and
+visualization of clonal tracking data. The required data is formed by samples
+and tag abundances in matrix form. Usually from cellular barcoding experiments,
+integration site retrieval analyses, or similar technologies.")
+ (license license:cc0)))
+
(define-public r-biocversion
(package
(name "r-biocversion")
base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
--
2.36.1
Reply sent
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Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Thu, 27 Oct 2022 14:04:02 GMT)
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Thu, 27 Oct 2022 14:04:02 GMT)
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Message #10 received at 56279-done <at> debbugs.gnu.org (full text, mbox):
Applied with minor changes, thanks!
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Fri, 25 Nov 2022 12:24:13 GMT)
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This bug report was last modified 1 year and 151 days ago.
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