GNU bug report logs - #56282
[PATCH 0/7] Update octave.

Previous Next

Package: guix-patches;

Reported by: Greg Hogan <code <at> greghogan.com>

Date: Tue, 28 Jun 2022 15:21:02 UTC

Severity: normal

Tags: patch

Done: Guillaume Le Vaillant <glv <at> posteo.net>

Bug is archived. No further changes may be made.

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 56282 in the body.
You can then email your comments to 56282 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

View this report as an mbox folder, status mbox, maintainer mbox


Report forwarded to guix-patches <at> gnu.org:
bug#56282; Package guix-patches. (Tue, 28 Jun 2022 15:21:02 GMT) Full text and rfc822 format available.

Acknowledgement sent to Greg Hogan <code <at> greghogan.com>:
New bug report received and forwarded. Copy sent to guix-patches <at> gnu.org. (Tue, 28 Jun 2022 15:21:02 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: guix-patches <at> gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH 0/7] Update octave.
Date: Tue, 28 Jun 2022 15:19:48 +0000
This patchset updates octave and failing dependent packages, with the
exception of the currently failing r-ifultools.

Greg Hogan (7):
  gnu: octave: Update to 7.1.0.
  gnu: Add r-metadat.
  gnu: Add r-mathjaxr.
  gnu: r-metafor: Update to 3.4-0.
  gnu: gnuradio: Update to 3.10.3.0.
  gnu: gr-satellites: Update to 4.6.0.
  gnu: gnss-sdr: Update to 0.0.17.

 gnu/packages/cran.scm  | 46 +++++++++++++++++++++++++++++++++++++++---
 gnu/packages/maths.scm |  4 ++--
 gnu/packages/radio.scm | 21 ++++++++++++-------
 3 files changed, 59 insertions(+), 12 deletions(-)

-- 
2.36.1





Information forwarded to guix-patches <at> gnu.org:
bug#56282; Package guix-patches. (Tue, 28 Jun 2022 15:24:01 GMT) Full text and rfc822 format available.

Message #8 received at 56282 <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: 56282 <at> debbugs.gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH 1/7] gnu: octave: Update to 7.1.0.
Date: Tue, 28 Jun 2022 15:22:47 +0000
* gnu/packages/maths.scm (octave): Update to 7.1.0.
---
 gnu/packages/maths.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 5e8fd7ae2d..8268b8954e 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2657,7 +2657,7 @@ (define-public ceres-solver-benchmarks
 (define-public octave-cli
   (package
     (name "octave-cli")
-    (version "6.2.0")
+    (version "7.1.0")
     (source
      (origin
       (method url-fetch)
@@ -2665,7 +2665,7 @@ (define-public octave-cli
                           version ".tar.xz"))
       (sha256
        (base32
-        "06id09zspya24gshcwgp039cp35c06150mdlxysawgnbrhj16wkv"))))
+        "0wv26nsfi6cq80np6p4av4wfrvbaflca6szajf6c60mbpdg63m1z"))))
     (build-system gnu-build-system)
     (inputs
      `(("alsa-lib" ,alsa-lib)
-- 
2.36.1





Information forwarded to guix-patches <at> gnu.org:
bug#56282; Package guix-patches. (Tue, 28 Jun 2022 15:24:01 GMT) Full text and rfc822 format available.

Message #11 received at 56282 <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: 56282 <at> debbugs.gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH 2/7] gnu: Add r-metadat.
Date: Tue, 28 Jun 2022 15:22:48 +0000
* gnu/packages/cran.scm (r-metadat): New variable.
---
 gnu/packages/cran.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 96dca393e6..bb2519bcda 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33438,3 +33438,24 @@ (define-public r-zoeppritz
 coefficients or scattering amplitudes, for seismological P and S-waves at an
 interface.")
     (license license:gpl2+)))
+
+(define-public r-metadat
+  (package
+    (name "r-metadat")
+    (version "1.2-0")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "metadat" version))
+              (sha256
+               (base32
+                "1f7mb3pw5d0akr09jjva06ay223izhpzbr21bapnw99x1kiybk7h"))))
+    (properties `((upstream-name . "metadat")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-mathjaxr))
+    (home-page "https://github.com/wviechtb/metadat")
+    (synopsis "Meta-Analysis Datasets")
+    (description
+     "This package provides a collection of meta-analysis datasets for teaching
+purposes, illustrating/testing meta-analytic methods, and validating published
+analyses.")
+    (license license:gpl2+)))
-- 
2.36.1





Information forwarded to guix-patches <at> gnu.org:
bug#56282; Package guix-patches. (Tue, 28 Jun 2022 15:24:02 GMT) Full text and rfc822 format available.

Message #14 received at 56282 <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: 56282 <at> debbugs.gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH 3/7] gnu: Add r-mathjaxr.
Date: Tue, 28 Jun 2022 15:22:49 +0000
* gnu/packages/cran.scm (r-mathjaxr): New variable.
---
 gnu/packages/cran.scm | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index bb2519bcda..b7387e444f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -33459,3 +33459,22 @@ (define-public r-metadat
 purposes, illustrating/testing meta-analytic methods, and validating published
 analyses.")
     (license license:gpl2+)))
+
+(define-public r-mathjaxr
+  (package
+    (name "r-mathjaxr")
+    (version "1.6-0")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "mathjaxr" version))
+              (sha256
+               (base32
+                "0yf1sfkb2kjsplipl2v4k2gp20li9xzsynclg228sy0v243pdi7c"))))
+    (properties `((upstream-name . "mathjaxr")))
+    (build-system r-build-system)
+    (home-page "https://github.com/wviechtb/mathjaxr")
+    (synopsis "Using 'Mathjax' in Rd Files")
+    (description
+     "This package provides 'MathJax' and macros to enable its use within Rd files for
+rendering equations in the HTML help files.")
+    (license license:gpl3)))
-- 
2.36.1





Information forwarded to guix-patches <at> gnu.org:
bug#56282; Package guix-patches. (Tue, 28 Jun 2022 15:24:02 GMT) Full text and rfc822 format available.

Message #17 received at 56282 <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: 56282 <at> debbugs.gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH 4/7] gnu: r-metafor: Update to 3.4-0.
Date: Tue, 28 Jun 2022 15:22:50 +0000
* gnu/packages/cran.scm (r-metafor): Update to 3.4-0.
[propagated-inputs]: Add r-mathjaxr r-metadat r-pbapply.
---
 gnu/packages/cran.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index b7387e444f..3fa6101900 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -29149,18 +29149,18 @@ (define-public r-mlecens
 (define-public r-metafor
   (package
     (name "r-metafor")
-    (version "2.4-0")
+    (version "3.4-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "metafor" version))
        (sha256
         (base32
-         "1b599fxk7s0brkchmx698fr5k4g1kzkia2rnlvhg349ffs5nfjmn"))))
+         "0vn244xfgq7yxwl6ykvadb305z360ssc9vzva7kbcdfiqhhvrqcj"))))
     (properties `((upstream-name . "metafor")))
     (build-system r-build-system)
     (propagated-inputs
-     (list r-matrix r-nlme))
+     (list r-mathjaxr r-matrix r-metadat r-nlme r-pbapply))
     (home-page "https://cran.r-project.org/web/packages/metafor/")
     (synopsis "Meta-analysis package for R")
     (description
-- 
2.36.1





Information forwarded to guix-patches <at> gnu.org:
bug#56282; Package guix-patches. (Tue, 28 Jun 2022 15:24:03 GMT) Full text and rfc822 format available.

Message #20 received at 56282 <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: 56282 <at> debbugs.gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH 5/7] gnu: gnuradio: Update to 3.10.3.0.
Date: Tue, 28 Jun 2022 15:22:51 +0000
* gnu/packages/radio.scm (gnuradio): Update to 3.10.3.0.
[native-inputs]: Add python-jsonschema and soapysdr.
[propagated-inputs]: Add spdlog.
[arguments]<#:configure-flags>: Add -DENABLE_GRC=ON.
---
 gnu/packages/radio.scm | 11 ++++++++---
 1 file changed, 8 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/radio.scm b/gnu/packages/radio.scm
index c25cdbc20c..e014707e44 100644
--- a/gnu/packages/radio.scm
+++ b/gnu/packages/radio.scm
@@ -542,7 +542,7 @@ (define-public redsea
 (define-public gnuradio
   (package
     (name "gnuradio")
-    (version "3.9.2.0")
+    (version "3.10.3.0")
     (source
      (origin
        (method git-fetch)
@@ -551,7 +551,7 @@ (define-public gnuradio
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "01wyqazrpphmb0fl69j93k0w4vm4d1l4177m1fyg7qx8hzia0aaq"))))
+        (base32 "0xdhb2blzajxpi0f2ch23hh6bzdwz5q7syi3bmiqzdjlj2yjfzd4"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("doxygen" ,doxygen)
@@ -589,6 +589,7 @@ (define-public gnuradio
        ("python" ,python)
        ("python-click" ,python-click)
        ("python-click-plugins" ,python-click-plugins)
+       ("python-jsonschema" ,python-jsonschema)
        ("python-lxml" ,python-lxml)
        ("python-matplotlib" ,python-matplotlib)
        ("python-numpy" ,python-numpy)
@@ -600,8 +601,11 @@ (define-public gnuradio
        ("qtbase" ,qtbase-5)
        ("qwt" ,qwt)
        ("sdl" ,sdl)
+       ("soapysdr" ,soapysdr)
        ("volk" ,volk)
        ("zeromq" ,zeromq)))
+    (propagated-inputs
+     (list spdlog))
     (arguments
      `(#:modules ((guix build cmake-build-system)
                   ((guix build glib-or-gtk-build-system) #:prefix glib-or-gtk:)
@@ -612,7 +616,8 @@ (define-public gnuradio
                            (guix build glib-or-gtk-build-system)
                            (guix build python-build-system))
        #:configure-flags
-       (list (string-append "-DMATHJAX2_ROOT="
+       (list "-DENABLE_GRC=ON"
+             (string-append "-DMATHJAX2_ROOT="
                             (assoc-ref %build-inputs "js-mathjax")
                             "/share/javascript/mathjax"))
        #:phases
-- 
2.36.1





Information forwarded to guix-patches <at> gnu.org:
bug#56282; Package guix-patches. (Tue, 28 Jun 2022 15:24:03 GMT) Full text and rfc822 format available.

Message #23 received at 56282 <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: 56282 <at> debbugs.gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH 6/7] gnu: gr-satellites: Update to 4.6.0.
Date: Tue, 28 Jun 2022 15:22:52 +0000
* gnu/packages/radio.scm (gr-satellites): Update to 4.6.0.
---
 gnu/packages/radio.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/radio.scm b/gnu/packages/radio.scm
index e014707e44..d7b7f60d97 100644
--- a/gnu/packages/radio.scm
+++ b/gnu/packages/radio.scm
@@ -847,7 +847,7 @@ (define-public gr-iqbal
 (define-public gr-satellites
   (package
     (name "gr-satellites")
-    (version "4.2.0")
+    (version "4.6.0")
     (source
      (origin
        (method git-fetch)
@@ -856,7 +856,7 @@ (define-public gr-satellites
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "01p9cnwjxas3pkqr9m5fnrgm45cji0sfdqqa51hzy7izx9vgzaf8"))))
+        (base32 "0mcrxwb27n2v8v8vmcmmm1pbmy3c02a22mz2wnpdsfb2163qpchw"))))
     (build-system cmake-build-system)
     (native-inputs
      (list pkg-config pybind11 python-six))
-- 
2.36.1





Information forwarded to guix-patches <at> gnu.org:
bug#56282; Package guix-patches. (Tue, 28 Jun 2022 15:24:03 GMT) Full text and rfc822 format available.

Message #26 received at 56282 <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: 56282 <at> debbugs.gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH 7/7] gnu: gnss-sdr: Update to 0.0.17.
Date: Tue, 28 Jun 2022 15:22:53 +0000
* gnu/packages/radio.scm (gnss-sdr): Update to 0.0.17.
[inputs]: Add fmt.
---
 gnu/packages/radio.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/radio.scm b/gnu/packages/radio.scm
index d7b7f60d97..efee0e2f31 100644
--- a/gnu/packages/radio.scm
+++ b/gnu/packages/radio.scm
@@ -79,6 +79,7 @@ (define-module (gnu packages radio)
   #:use-module (gnu packages popt)
   #:use-module (gnu packages pulseaudio)
   #:use-module (gnu packages protobuf)
+  #:use-module (gnu packages pretty-print)
   #:use-module (gnu packages python)
   #:use-module (gnu packages python-science)
   #:use-module (gnu packages python-web)
@@ -2506,7 +2507,7 @@ (define-public urh
 (define-public gnss-sdr
   (package
     (name "gnss-sdr")
-    (version "0.0.15")
+    (version "0.0.17")
     (source
      (origin
        (method git-fetch)
@@ -2515,7 +2516,7 @@ (define-public gnss-sdr
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1m41rnlfr1nrzbg382jfsk5x0by2ym48v3innd2rbc6phd85q223"))))
+        (base32 "0kxn98vmrsd2a157cf3hsmivi6p4k4a3907j5w8hmcs0nn92786i"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("gfortran" ,gfortran)
@@ -2527,6 +2528,7 @@ (define-public gnss-sdr
     (inputs
      (list armadillo
            boost
+           fmt
            gflags
            glog
            gmp
-- 
2.36.1





Reply sent to Guillaume Le Vaillant <glv <at> posteo.net>:
You have taken responsibility. (Thu, 30 Jun 2022 09:27:01 GMT) Full text and rfc822 format available.

Notification sent to Greg Hogan <code <at> greghogan.com>:
bug acknowledged by developer. (Thu, 30 Jun 2022 09:27:01 GMT) Full text and rfc822 format available.

Message #31 received at 56282-done <at> debbugs.gnu.org (full text, mbox):

From: Guillaume Le Vaillant <glv <at> posteo.net>
To: Greg Hogan <code <at> greghogan.com>
Cc: 56282-done <at> debbugs.gnu.org
Subject: Re: [bug#56282] [PATCH 0/7] Update octave.
Date: Thu, 30 Jun 2022 09:25:40 +0000
[Message part 1 (text/plain, inline)]
Patches pushed as 4eddce8ce9337fd4d8f4fd97b7d41ac3cef4e3f0 and
following.
Thanks.
[signature.asc (application/pgp-signature, inline)]

Information forwarded to guix-patches <at> gnu.org:
bug#56282; Package guix-patches. (Thu, 30 Jun 2022 09:55:02 GMT) Full text and rfc822 format available.

Message #34 received at 56282 <at> debbugs.gnu.org (full text, mbox):

From: Maxime Devos <maximedevos <at> telenet.be>
To: Greg Hogan <code <at> greghogan.com>, 56282 <at> debbugs.gnu.org
Subject: Re: [bug#56282] [PATCH 3/7] gnu: Add r-mathjaxr.
Date: Thu, 30 Jun 2022 11:54:19 +0200
[Message part 1 (text/plain, inline)]
Greg Hogan schreef op di 28-06-2022 om 15:22 [+0000]:
> * gnu/packages/cran.scm (r-mathjaxr): New variable.

This patch was (will be?) reverted as mentioned on #guix because ...

> +    (source (origin
> +              (method url-fetch)
> +              (uri (cran-uri "mathjaxr" version))
> +              (sha256
> +               (base32
> +                "0yf1sfkb2kjsplipl2v4k2gp20li9xzsynclg228sy0v243pdi7c"))))

... it bundles mathjax, and it isn't built from source.

> +    (properties `((upstream-name . "mathjaxr")))
> +    (build-system r-build-system)
> +    (home-page "https://github.com/wviechtb/mathjaxr")
> +    (synopsis "Using 'Mathjax' in Rd Files")
> +    (description
> +     "This package provides 'MathJax' and macros to enable its use within Rd files for
> +rendering equations in the HTML help files.")
> +    (license license:gpl3)))

also, the license information is incorrect -- the mathjax is
Apache 2.0, and it's a rather important component, so I think it should
be listed.

Greetings,
Maxime.
[signature.asc (application/pgp-signature, inline)]

bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Thu, 28 Jul 2022 11:24:10 GMT) Full text and rfc822 format available.

This bug report was last modified 1 year and 245 days ago.

Previous Next


GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.