GNU bug report logs - #57485
[PATCH] gnu: r-dyngen: Update to 1.0.4.

Previous Next

Package: guix-patches;

Reported by: Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>

Date: Tue, 30 Aug 2022 10:46:02 UTC

Severity: normal

Tags: patch

Done: Ricardo Wurmus <rekado <at> elephly.net>

Bug is archived. No further changes may be made.

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 57485 in the body.
You can then email your comments to 57485 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

View this report as an mbox folder, status mbox, maintainer mbox


Report forwarded to rekado <at> elephly.net, guix-patches <at> gnu.org:
bug#57485; Package guix-patches. (Tue, 30 Aug 2022 10:46:02 GMT) Full text and rfc822 format available.

Acknowledgement sent to Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>:
New bug report received and forwarded. Copy sent to rekado <at> elephly.net, guix-patches <at> gnu.org. (Tue, 30 Aug 2022 10:46:02 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: r-dyngen: Update to 1.0.4.
Date: Tue, 30 Aug 2022 12:44:31 +0200
* gnu/packages/bioinformatics.scm (r-dyngnen): Update to 1.0.4.
[source]: Change to cran-uri source.
---
 gnu/packages/bioinformatics.scm | 76 ++++++++++++++++-----------------
 1 file changed, 36 insertions(+), 40 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2bae609614..89e5dd645f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11592,47 +11592,43 @@ (define-public biobambam2
     (license license:gpl3+)))
 
 (define-public r-dyngen
-  (let ((commit "37fd1798fcbd41093fb3d7775bb2d268e2fc82b6")
-        (revision "1"))
-    (package
-      (name "r-dyngen")
-      (version (git-version "1.0.3" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/dynverse/dyngen")
-               (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "05pr6v1b8yji1jnj3fwx0crmg8ay6yy6lp9qjmcyvhkwbmf3kvc7"))))
-      (properties `((upstream-name . "dyngen")))
-      (build-system r-build-system)
-      (propagated-inputs
-       (list r-assertthat
-             r-dplyr
-             r-dynutils
-             r-ggplot2
-             r-ggraph
-             r-ggrepel
-             r-gillespiessa2
-             r-igraph
-             r-lmds
-             r-matrix
-             r-patchwork
-             r-pbapply
-             r-purrr
-             r-rlang
-             r-tibble
-             r-tidygraph
-             r-tidyr
-             r-viridis))
-      (home-page "https://github.com/dynverse/dyngen")
-      (synopsis "Multi-Modal simulator for single-cell omics analyses")
-      (description
-       "This package provides a multi-modal simulation engine for studying
+  (package
+    (name "r-dyngen")
+    (version "1.0.4")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "dyngen" version))
+       (sha256
+        (base32
+         "1qmqy0dyiz30zpf3ii4h2ip6hg2449ghb474sjzrqa1yk9mdpy4i"))))
+    (properties `((upstream-name . "dyngen")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-assertthat
+           r-dplyr
+           r-dynutils
+           r-ggplot2
+           r-ggraph
+           r-ggrepel
+           r-gillespiessa2
+           r-igraph
+           r-lmds
+           r-matrix
+           r-patchwork
+           r-pbapply
+           r-purrr
+           r-rlang
+           r-tibble
+           r-tidygraph
+           r-tidyr
+           r-viridis))
+    (home-page "https://github.com/dynverse/dyngen")
+    (synopsis "Multi-Modal simulator for single-cell omics analyses")
+    (description
+     "This package provides a multi-modal simulation engine for studying
 dynamic cellular processes at single-cell resolution.")
-      (license license:expat))))
+    (license license:expat)))
 
 ;; Needed for r-liana
 (define-public r-omnipathr/devel

base-commit: 47c11772dfe840a536ed7ec438fe832878f51054
-- 
2.37.2





Reply sent to Ricardo Wurmus <rekado <at> elephly.net>:
You have taken responsibility. (Tue, 30 Aug 2022 21:07:02 GMT) Full text and rfc822 format available.

Notification sent to Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>:
bug acknowledged by developer. (Tue, 30 Aug 2022 21:07:02 GMT) Full text and rfc822 format available.

Message #10 received at 57485-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 57485-done <at> debbugs.gnu.org
Subject: Re: [bug#57485] [PATCH] gnu: r-dyngen: Update to 1.0.4.
Date: Tue, 30 Aug 2022 22:58:13 +0200
Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioinformatics.scm (r-dyngnen): Update to 1.0.4.
> [source]: Change to cran-uri source.

Applied, thanks!

-- 
Ricardo




bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Wed, 28 Sep 2022 11:24:09 GMT) Full text and rfc822 format available.

This bug report was last modified 1 year and 182 days ago.

Previous Next


GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.