GNU bug report logs - #57698
[PATCH staging 0/3] Update suitesparse.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: guix-patches <at> gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH staging 0/3] Update suitesparse.
Date: Fri,  9 Sep 2022 14:29:44 +0000

All dependents successfully build except the continued failure of
python-bokeh, python-dolfin-adjoint, and shogun.

Greg Hogan (3):
  gnu: suitesparse: Update to 5.13.0.
  gnu: octave: Update to 7.2.0.
  gnu: python-hmmlearn: Update to 0.2.7.

 gnu/packages/machine-learning.scm | 14 +++++++-------
 gnu/packages/maths.scm            |  8 ++++----
 2 files changed, 11 insertions(+), 11 deletions(-)

-- 
2.37.2

Message #8 received at 57698 <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: 57698 <at> debbugs.gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH staging 2/3] gnu: octave: Update to 7.2.0.
Date: Fri,  9 Sep 2022 14:31:46 +0000

* gnu/packages/maths.scm (octave): Update to 7.2.0.
---
 gnu/packages/maths.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index f12bfc2225..53162a4d65 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2760,7 +2760,7 @@ (define-public ceres-solver-benchmarks
 (define-public octave-cli
   (package
     (name "octave-cli")
-    (version "7.1.0")
+    (version "7.2.0")
     (source
      (origin
       (method url-fetch)
@@ -2768,7 +2768,7 @@ (define-public octave-cli
                           version ".tar.xz"))
       (sha256
        (base32
-        "0wv26nsfi6cq80np6p4av4wfrvbaflca6szajf6c60mbpdg63m1z"))))
+        "0w81ncl9d4x1ay3ylsag87k20c0byiyjcmfd9kb7b7ylr71pivsa"))))
     (build-system gnu-build-system)
     (inputs
      `(("alsa-lib" ,alsa-lib)
-- 
2.37.2

Message #11 received at 57698 <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: 57698 <at> debbugs.gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH staging 1/3] gnu: suitesparse: Update to 5.13.0.
Date: Fri,  9 Sep 2022 14:31:45 +0000

* gnu/packages/maths.scm (suitesparse): Update to 5.13.0.
---
 gnu/packages/maths.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 94e14c8e49..f12bfc2225 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -4873,7 +4873,7 @@ (define-public openspecfun
 (define-public suitesparse
   (package
     (name "suitesparse")
-    (version "5.12.0")
+    (version "5.13.0")
     (source
      (origin
        (method git-fetch)
@@ -4883,7 +4883,7 @@ (define-public suitesparse
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0zpl51pfpv7ap7z97jlryba2la1qdmzm11bhzkn55wlb03xzi6k6"))
+         "1zwri246yr39p9ymjp18dzv36ch0dn107sf0jghj7capigasfxq2"))
        (patches (search-patches "suitesparse-mongoose-cmake.patch"))
        (modules '((guix build utils)))
        (snippet
-- 
2.37.2

Message #14 received at 57698 <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: 57698 <at> debbugs.gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH staging 3/3] gnu: python-hmmlearn: Update to 0.2.7.
Date: Fri,  9 Sep 2022 14:31:47 +0000

* gnu/packages/machine-learning.scm (python-hmmlearn): Update to 0.2.7.
[source]<#:origin>: Remove deletion snippet for file removed upstream.
[propagated-inputs]: Add pybind11.
---
 gnu/packages/machine-learning.scm | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index c61428486c..38bcc75e07 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -3123,18 +3123,14 @@ (define-public python-torchfile
 (define-public python-hmmlearn
   (package
     (name "python-hmmlearn")
-    (version "0.2.6")
+    (version "0.2.7")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "hmmlearn" version))
        (sha256
         (base32
-         "1my0j3rzp17438idr32ssh0j969a98yjblx5igx5kgiiigr9qa1a"))
-       (snippet
-        #~(begin
-            (use-modules ((guix build utils)))
-            (delete-file "lib/hmmlearn/_hmmc.c")))))
+         "1qgnf1kdxicygy8nvpv866iqvwq0rc6xkd3s6slmvxvsy8h2fjvb"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -3146,7 +3142,11 @@ (define-public python-hmmlearn
                (with-directory-excursion (string-append (assoc-ref outputs "out") "/lib")
                  (invoke "python" "-m" "pytest"))))))))
     (propagated-inputs
-     (list python-cython python-numpy python-scikit-learn python-scipy
+     (list pybind11
+           python-cython
+           python-numpy
+           python-scikit-learn
+           python-scipy
            python-setuptools-scm))
     (native-inputs
      (list python-pytest))
-- 
2.37.2

Message #19 received at 57698-done <at> debbugs.gnu.org (full text, mbox):

From: Ludovic Courtès <ludo <at> gnu.org>
To: Greg Hogan <code <at> greghogan.com>
Cc: 57698-done <at> debbugs.gnu.org
Subject: Re: bug#57698: [PATCH staging 0/3] Update suitesparse.
Date: Tue, 22 Nov 2022 23:23:50 +0100

Hi Greg,

Greg Hogan <code <at> greghogan.com> skribis:

> All dependents successfully build except the continued failure of
> python-bokeh, python-dolfin-adjoint, and shogun.
>
> Greg Hogan (3):
>   gnu: suitesparse: Update to 5.13.0.
>   gnu: octave: Update to 7.2.0.
>   gnu: python-hmmlearn: Update to 0.2.7.

I went ahead and pushed these on ‘master’: it’s slightly above the
documented threshold but dependents are small packages and this is a
rather safe update (I checked on current ‘master’ that there’s no
regression).

Thank you and sorry for the delay!

Ludo’.

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