X-Loop: help-debbugs@HIDDEN Subject: bug#59772: conda 22.9.0 breaks "conda init bash" Resent-From: Hugo Buddelmeijer <hugo@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: bug-guix@HIDDEN Resent-Date: Fri, 02 Dec 2022 11:50:02 +0000 Resent-Message-ID: <handler.59772.B.166998175331829 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: report 59772 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: 59772 <at> debbugs.gnu.org X-Debbugs-Original-To: bug-guix@HIDDEN Received: via spool by submit <at> debbugs.gnu.org id=B.166998175331829 (code B ref -1); Fri, 02 Dec 2022 11:50:02 +0000 Received: (at submit) by debbugs.gnu.org; 2 Dec 2022 11:49:13 +0000 Received: from localhost ([127.0.0.1]:46223 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1p14XY-0008HJ-Tf for submit <at> debbugs.gnu.org; Fri, 02 Dec 2022 06:49:13 -0500 Received: from lists.gnu.org ([209.51.188.17]:44686) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <blackshift@HIDDEN>) id 1p14XW-0008HD-5h for submit <at> debbugs.gnu.org; Fri, 02 Dec 2022 06:49:11 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <blackshift@HIDDEN>) id 1p14XV-00005Q-QA for bug-guix@HIDDEN; Fri, 02 Dec 2022 06:49:09 -0500 Received: from mail-ed1-f46.google.com ([209.85.208.46]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from <blackshift@HIDDEN>) id 1p14XT-00030Z-JR for bug-guix@HIDDEN; Fri, 02 Dec 2022 06:49:09 -0500 Received: by mail-ed1-f46.google.com with SMTP id s5so6094187edc.12 for <bug-guix@HIDDEN>; Fri, 02 Dec 2022 03:49:06 -0800 (PST) X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=to:subject:message-id:date:from:mime-version:x-gm-message-state :from:to:cc:subject:date:message-id:reply-to; bh=wwirl8aaB6WghRZlOGxPEQNIWZPcy3boH8cKU/GBoxc=; b=n8vssejfJRXQ++8JoEF7c4EtfSR9fGxuyCecI2nX6JNAkt35m907wbQB+DLTWpTp6S t+u0YoHZQIul/GjmftczclUUVswqrkz1UvhRpc1BN4DebYW8xAEtQFe3DDcwUMAvbgL1 P8OuekTnz6iCr+ZgFcnNI0pmJD9jP3yIfw63qMyOG7feiCHS1K/SzlWXNO+pmtjBXUSh v2uR8AlNQy4eZK/eTaD8/6f/6nVGXUNchA8sZeCbYXRaM3m2w7f+NmFBSM76c5YHbXH6 1Ekp2gXGUFoWjZBTbaw2+3RvAExfdTERtQI+Kw9CYnrEtnNKhF9DFUoFp/wx0jrM6liX /spA== X-Gm-Message-State: ANoB5pkw5LQb++QtqDN/lb+uUAM1qa7B5GWWx/jNb+1aq0VpxVMevjuC 0L/6JvJINjWYO6XY/l2LCAbr9cuKCt9t6OS2lI6e/zr3Uk/TAw== X-Google-Smtp-Source: AA0mqf6ewkm+Ju8C5izuLzZcrDmHnXNJ3pBbutOBSvzkju3lPvhh9jHpTuj48oyaMhToHN6usTbIHB+yPhgzicceswA= X-Received: by 2002:a05:6402:3644:b0:45f:c7f2:297d with SMTP id em4-20020a056402364400b0045fc7f2297dmr64961074edb.266.1669981744981; Fri, 02 Dec 2022 03:49:04 -0800 (PST) MIME-Version: 1.0 From: Hugo Buddelmeijer <hugo@HIDDEN> Date: Fri, 2 Dec 2022 12:48:53 +0100 Message-ID: <CA+Jv8O0siPiEMzzgLYNDJ=P-O7Y3MXJ+LoxURC9tXFx4juLn9A@HIDDEN> Content-Type: multipart/alternative; boundary="000000000000b0f59405eed6ec1b" Received-SPF: pass client-ip=209.85.208.46; envelope-from=blackshift@HIDDEN; helo=mail-ed1-f46.google.com X-Spam_score_int: -15 X-Spam_score: -1.6 X-Spam_bar: - X-Spam_report: (-1.6 / 5.0 requ) BAYES_00=-1.9, FREEMAIL_FORGED_FROMDOMAIN=0.001, FREEMAIL_FROM=0.001, HEADER_FROM_DIFFERENT_DOMAINS=0.249, HTML_MESSAGE=0.001, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H2=-0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=no autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.1 (-) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -2.1 (--) --000000000000b0f59405eed6ec1b Content-Type: text/plain; charset="UTF-8" Hi all, Conda 22.9.0 breaks "conda init bash". Conda requires some functions to be present in ~/.bashrc (or equivalent dot file for other shells) in order to function as intended [*]. These functions are added there through "conda init bash", which each conda user should run once. $ guix shell -C conda sudo [env]$ conda --version conda 22.9.0 [env]$ conda init bash [..] File "/gnu/store/lvip6h5pamjwmvnkwg60sjb63ph8698k-python-3.9.9/lib/python3.9/subprocess.py", line 19 59, in _communicate input_view = memoryview(self._input) TypeError: memoryview: a bytes-like object is required, not 'str' [...] However, it seems that this is a conda problem (not sure), and not a guix problem. E.g. see https://github.com/conda/conda/issues/11885 "conda 22.9.0 breaks bash command prompt" The suggested solution there is to do "sudo $(which conda) init bash", which is not really acceptable for us. Also, "conda init bash" does seem to actually do what it is supposed to do: add conda functions to ~/.bashrc; the error occurs after that. So maybe we can just wait this out, or try to see whether it works with conda 22.11.0. Greetings, Hugo [*] There are also some problems in the interplay between guix and the conda functions in .bashrc. I'll report those later. --000000000000b0f59405eed6ec1b Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable <div dir=3D"ltr"><div>Hi all,</div><div><br></div><div>Conda 22.9.0 breaks = "conda init bash". Conda requires some functions to be present in= ~/.bashrc (or equivalent dot file for other shells) in order to function a= s intended [*]. These functions are added there through "conda init ba= sh", which each conda user should run once.<br></div><div><br></div><d= iv>$ guix shell -C conda sudo<br></div><div><br></div><div>[env]$ conda --= version<br>conda 22.9.0</div><div><br></div><div>[env]$ conda init bash<br>= [..]</div><div>=C2=A0 =C2=A0 =C2=A0 File "/gnu/store/lvip6h5pamjwmvnkw= g60sjb63ph8698k-python-3.9.9/lib/python3.9/subprocess.py", line 19<br>= 59, in _communicate<br>=C2=A0 =C2=A0 =C2=A0 =C2=A0 input_view =3D memoryvie= w(self._input)<br>=C2=A0 =C2=A0 TypeError: memoryview: a bytes-like object = is required, not 'str'<br></div><div>[...]</div><div><br></div><div= >However, it seems that this is a conda problem (not sure), and not a guix = problem. E.g. see</div><div>=C2=A0=C2=A0 <a href=3D"https://github.com/cond= a/conda/issues/11885">https://github.com/conda/conda/issues/11885</a></div>= <div>=C2=A0=C2=A0 "conda 22.9.0 breaks bash command prompt"<br></= div><div>The suggested solution there is to do "sudo $(which conda) in= it bash", which is not really acceptable for us.</div><div><br></div><= div>Also, "conda init bash" does seem to actually do what it is s= upposed to do: add conda functions to ~/.bashrc; the error occurs after tha= t. So maybe we can just wait this out, or try to see whether it works with = conda 22.11.0.</div><div><br></div><div>Greetings,</div><div>Hugo<br></div>= <div><br></div><div>[*] There are also some problems in the interplay betwe= en guix and the conda functions in .bashrc. I'll report those later.<br= ></div><br></div> --000000000000b0f59405eed6ec1b--
Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) Content-Type: text/plain; charset=utf-8 X-Loop: help-debbugs@HIDDEN From: help-debbugs@HIDDEN (GNU bug Tracking System) To: Hugo Buddelmeijer <hugo@HIDDEN> Subject: bug#59772: Acknowledgement (conda 22.9.0 breaks "conda init bash") Message-ID: <handler.59772.B.166998175331829.ack <at> debbugs.gnu.org> References: <CA+Jv8O0siPiEMzzgLYNDJ=P-O7Y3MXJ+LoxURC9tXFx4juLn9A@HIDDEN> X-Gnu-PR-Message: ack 59772 X-Gnu-PR-Package: guix Reply-To: 59772 <at> debbugs.gnu.org Date: Fri, 02 Dec 2022 11:50:02 +0000 Thank you for filing a new bug report with debbugs.gnu.org. This is an automatically generated reply to let you know your message has been received. Your message is being forwarded to the package maintainers and other interested parties for their attention; they will reply in due course. Your message has been sent to the package maintainer(s): bug-guix@HIDDEN If you wish to submit further information on this problem, please send it to 59772 <at> debbugs.gnu.org. Please do not send mail to help-debbugs@HIDDEN unless you wish to report a problem with the Bug-tracking system. --=20 59772: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D59772 GNU Bug Tracking System Contact help-debbugs@HIDDEN with problems
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