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Subject: bug#60545: Keras h5py Version Mismatch
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From: Zacchaeus Scheffer <Zacchaeus.Scheffer@HIDDEN>
Thread-Topic: Keras h5py Version Mismatch
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--_000_CY4PR03MB27591E805538BEE2A385256098F59CY4PR03MB2759namp_
Content-Type: text/plain; charset="iso-8859-1"
Content-Transfer-Encoding: quoted-printable
Hi Guix!
It would seem that the current keras version expects an earlier h5py versio=
n for loading models. Specifically, running:
from tensorflow.keras.models import load_model
model =3D load_model("model.h5")
fails with:
File "/gnu/store/idfn4l2kxil9id21v1yci4jcw6103fah-profile/lib/python3.9/s=
ite-packages/tensorflow/python/keras/engine/saving.py", line 228, in load_m=
odel
model_config =3D json.loads(model_config.decode('utf-8'))
AttributeError: 'str' object has no attribute 'decode'
The above works fine in my local pip environment (see below). A quick sear=
ch online indicates that this can be fixed by downgrading h5py to version 2=
.10. The current h5py version in guix is 3.6.
My assumption is that this could also be fixed with an upgrade to keras, bu=
t upgrading keras sounds much more involved. For a short-term fix, would i=
t be possible to add back a package definition for an earlier h5py in addit=
ion to the current version? I'm sure an appropriate version exists somewhe=
re in guix's git history, though my git-foo is too weak for me to check.
Thanks,
Zacchae
P.S.
working (pip): keras 2.10.0, h5py 3.7.0
not working (current guix): keras 2.2.4, h5py 3.6.0
--_000_CY4PR03MB27591E805538BEE2A385256098F59CY4PR03MB2759namp_
Content-Type: text/html; charset="iso-8859-1"
Content-Transfer-Encoding: quoted-printable
<html>
<head>
<meta http-equiv=3D"Content-Type" content=3D"text/html; charset=3Diso-8859-=
1">
<style type=3D"text/css" style=3D"display:none;"> P {margin-top:0;margin-bo=
ttom:0;} </style>
</head>
<body dir=3D"ltr">
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">Hi Guix!</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">It would seem that the current keras version expect=
s an earlier h5py version for loading
models. Specifically, running:</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">from tensorflow.keras.models import load_model</spa=
n></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">model =3D load_model("model.h5")</span></=
div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof" style=3D"font-family: Calibri, Arial, Helveti=
ca, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb=
(255, 255, 255);">
fails with:</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
File "/gnu/store/idfn4l2kxil9id21v1yci4jcw6103fah-profile/lib/p=
ython3.9/site-packages/tensorflow/python/keras/engine/saving.py", line=
228, in load_model
<div class=3D"FluidPluginCopy ContentPasted0"> model_config =
=3D json.loads(model_config.decode('utf-8'))</div>
<div class=3D"FluidPluginCopy ContentPasted0">AttributeError: 'str' object =
has no attribute 'decode'</div>
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
The above works fine in my local pip environment (see below). A quick=
search online indicates that this can be fixed by downgrading h5py to vers=
ion 2.10. The current h5py version in guix is 3.6.</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
My assumption is that this could also be fixed with an upgrade to keras, bu=
t upgrading keras sounds much more involved. For a short-term fix, wo=
uld it be possible to add back a package definition for an earlier h5py in =
addition to the current version? I'm
sure an appropriate version exists somewhere in guix's git history, though=
my git-foo is too weak for me to check.</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
Thanks,</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<div>Zacchae</div>
<div><br>
</div>
<div><br>
</div>
<div>P.S.</div>
<div>working (pip): keras 2.10.0, h5py 3.7.0</div>
<div>not working (current guix): keras 2.2.4, h5py 3.6.0</div>
</div>
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</html>
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Hi,
On Wed, 04 Jan 2023 at 01:37, Zacchaeus Scheffer <Zacchaeus.Scheffer@HIDDEN> wrote:
> working (pip): keras 2.10.0, h5py 3.7.0
> not working (current guix): keras 2.2.4, h5py 3.6.0
Indeed, it is collateral to ea403bf290f4bf8c7bae314e32dbb90653f92996
--8<---------------cut here---------------start------------->8---
gnu: python-h5py: Update to 3.6.0.
* gnu/packages/python-xyz.scm (python-h5py): Update to 3.6.0.
[arguments]: Set HDF5_DIR variable instead of patching files.
--8<---------------cut here---------------end--------------->8---
Well, the update of Keras to 2.11.0 (the current latest) requires some
work. First, fetch from Github instead of PyPI because the sources are
not available after v2.6.0; e.g.,
https://pypi.org/project/keras/2.11.0/#files
Then, second adapt the recipe. Do you want to give a try?
Cheers,
simon
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--_000_CY4PR03MB27599F8ABE114B8822E4ABFF98D09CY4PR03MB2759namp_
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Hi,
I should probably mention that I am not looking into this. I want to learn=
more guix, but keras and the additional dependencies required for later ve=
rsions is kind of a monster to me at the moment.
Thanks,
Zacchae
________________________________
From: zimoun <zimon.toutoune@HIDDEN>
Sent: Friday, January 6, 2023 6:40 AM
To: Zacchaeus Scheffer <Zacchaeus.Scheffer@HIDDEN>; 60545@HIDDEN=
u.org <60545 <at> debbugs.gnu.org>
Subject: Re: bug#60545: Keras h5py Version Mismatch
CAUTION: Email originated externally, do not click links or open attachment=
s unless you recognize the sender and know the content is safe.
Hi,
On Wed, 04 Jan 2023 at 01:37, Zacchaeus Scheffer <Zacchaeus.Scheffer@synapt=
ics.com> wrote:
> working (pip): keras 2.10.0, h5py 3.7.0
> not working (current guix): keras 2.2.4, h5py 3.6.0
Indeed, it is collateral to ea403bf290f4bf8c7bae314e32dbb90653f92996
--8<---------------cut here---------------start------------->8---
gnu: python-h5py: Update to 3.6.0.
* gnu/packages/python-xyz.scm (python-h5py): Update to 3.6.0.
[arguments]: Set HDF5_DIR variable instead of patching files.
--8<---------------cut here---------------end--------------->8---
Well, the update of Keras to 2.11.0 (the current latest) requires some
work. First, fetch from Github instead of PyPI because the sources are
not available after v2.6.0; e.g.,
https://urldefense.proofpoint.com/v2/url?u=3Dhttps-3A__pypi.org_project=
_keras_2.11.0_-23files&d=3DDwIBAg&c=3D7dfBJ8cXbWjhc0BhImu8wVIoUFmBzj1s88r8E=
GyM0UY&r=3D1moyBSYvgSFmdTYHNEHEwakZGFkPl3pixLezH1qWWXFZPpSXOvpoeGr4XIg6G8V0=
&m=3DNqD4egq46utBpoyT-8Gr6A3lESGvdg2j7CIMrB0r_y4I-pFRV2Gxn2-Lb7s7tsyD&s=3DR=
o23h-Sd5x7VKOXeIYl4j5KGqDMAyZprruKUgdacbCo&e=3D
Then, second adapt the recipe. Do you want to give a try?
Cheers,
simon
--_000_CY4PR03MB27599F8ABE114B8822E4ABFF98D09CY4PR03MB2759namp_
Content-Type: text/html; charset="us-ascii"
Content-Transfer-Encoding: quoted-printable
<html>
<head>
<meta http-equiv=3D"Content-Type" content=3D"text/html; charset=3Dus-ascii"=
>
<style type=3D"text/css" style=3D"display:none;"> P {margin-top:0;margin-bo=
ttom:0;} </style>
</head>
<body dir=3D"ltr">
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class=
=3D"elementToProof">
Hi,</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class=
=3D"elementToProof">
<br>
</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class=
=3D"elementToProof">
I should probably mention that I am not looking into this. I want to =
learn more guix, but keras and the additional dependencies required for lat=
er versions is kind of a monster to me at the moment.</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class=
=3D"elementToProof">
<br>
</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class=
=3D"elementToProof">
Thanks,
<div>Zacchae</div>
</div>
<div style=3D"font-family: Calibri, Arial, Helvetica, sans-serif; font-size=
: 12pt; color: rgb(0, 0, 0); background-color: rgb(255, 255, 255);" class=
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</div>
<div id=3D"appendonsend"></div>
<hr style=3D"display:inline-block;width:98%" tabindex=3D"-1">
<div id=3D"divRplyFwdMsg" dir=3D"ltr"><font face=3D"Calibri, sans-serif" st=
yle=3D"font-size:11pt" color=3D"#000000"><b>From:</b> zimoun <zimon.tout=
oune@HIDDEN><br>
<b>Sent:</b> Friday, January 6, 2023 6:40 AM<br>
<b>To:</b> Zacchaeus Scheffer <Zacchaeus.Scheffer@HIDDEN>; 605=
45 <at> debbugs.gnu.org <60545 <at> debbugs.gnu.org><br>
<b>Subject:</b> Re: bug#60545: Keras h5py Version Mismatch</font>
<div> </div>
</div>
<div class=3D"BodyFragment"><font size=3D"2"><span style=3D"font-size:11pt;=
">
<div class=3D"PlainText">CAUTION: Email originated externally, do not click=
links or open attachments unless you recognize the sender and know the con=
tent is safe.<br>
<br>
<br>
Hi,<br>
<br>
On Wed, 04 Jan 2023 at 01:37, Zacchaeus Scheffer <Zacchaeus.Scheffer@syn=
aptics.com> wrote:<br>
<br>
> working (pip): keras 2.10.0, h5py 3.7.0<br>
> not working (current guix): keras 2.2.4, h5py 3.6.0<br>
<br>
Indeed, it is collateral to ea403bf290f4bf8c7bae314e32dbb90653f92996<br>
<br>
--8<---------------cut here---------------start------------->8---<br>
gnu: python-h5py: Update to 3.6.0.<br>
<br>
* gnu/packages/python-xyz.scm (python-h5py): Update to 3.6.0.<br>
[arguments]: Set HDF5_DIR variable instead of patching files.<br>
--8<---------------cut here---------------end--------------->8---<br>
<br>
Well, the update of Keras to 2.11.0 (the current latest) requires some<br>
work. First, fetch from Github instead of PyPI because the sources ar=
e<br>
not available after v2.6.0; e.g.,<br>
<br>
<a href=3D"https://urldefense.proofpoint.com/v2/url?u=3D=
https-3A__pypi.org_project_keras_2.11.0_-23files&d=3DDwIBAg&c=3D7df=
BJ8cXbWjhc0BhImu8wVIoUFmBzj1s88r8EGyM0UY&r=3D1moyBSYvgSFmdTYHNEHEwakZGF=
kPl3pixLezH1qWWXFZPpSXOvpoeGr4XIg6G8V0&m=3DNqD4egq46utBpoyT-8Gr6A3lESGv=
dg2j7CIMrB0r_y4I-pFRV2Gxn2-Lb7s7tsyD&s=3DRo23h-Sd5x7VKOXeIYl4j5KGqDMAyZ=
prruKUgdacbCo&e=3D">
https://urldefense.proofpoint.com/v2/url?u=3Dhttps-3A__pypi.org_project_ker=
as_2.11.0_-23files&d=3DDwIBAg&c=3D7dfBJ8cXbWjhc0BhImu8wVIoUFmBzj1s8=
8r8EGyM0UY&r=3D1moyBSYvgSFmdTYHNEHEwakZGFkPl3pixLezH1qWWXFZPpSXOvpoeGr4=
XIg6G8V0&m=3DNqD4egq46utBpoyT-8Gr6A3lESGvdg2j7CIMrB0r_y4I-pFRV2Gxn2-Lb7=
s7tsyD&s=3DRo23h-Sd5x7VKOXeIYl4j5KGqDMAyZprruKUgdacbCo&e=3D</a><br>
<br>
Then, second adapt the recipe. Do you want to give a try?<br>
<br>
<br>
Cheers,<br>
simon<br>
<br>
</div>
</span></font></div>
</body>
</html>
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From: Zacchaeus Scheffer <Zacchaeus.Scheffer@HIDDEN>
To: "bug-guix@HIDDEN" <bug-guix@HIDDEN>
Subject: Keras h5py Version Mismatch
Thread-Topic: Keras h5py Version Mismatch
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--_000_CY4PR03MB27591E805538BEE2A385256098F59CY4PR03MB2759namp_
Content-Type: text/plain; charset="iso-8859-1"
Content-Transfer-Encoding: quoted-printable
Hi Guix!
It would seem that the current keras version expects an earlier h5py versio=
n for loading models. Specifically, running:
from tensorflow.keras.models import load_model
model =3D load_model("model.h5")
fails with:
File "/gnu/store/idfn4l2kxil9id21v1yci4jcw6103fah-profile/lib/python3.9/s=
ite-packages/tensorflow/python/keras/engine/saving.py", line 228, in load_m=
odel
model_config =3D json.loads(model_config.decode('utf-8'))
AttributeError: 'str' object has no attribute 'decode'
The above works fine in my local pip environment (see below). A quick sear=
ch online indicates that this can be fixed by downgrading h5py to version 2=
.10. The current h5py version in guix is 3.6.
My assumption is that this could also be fixed with an upgrade to keras, bu=
t upgrading keras sounds much more involved. For a short-term fix, would i=
t be possible to add back a package definition for an earlier h5py in addit=
ion to the current version? I'm sure an appropriate version exists somewhe=
re in guix's git history, though my git-foo is too weak for me to check.
Thanks,
Zacchae
P.S.
working (pip): keras 2.10.0, h5py 3.7.0
not working (current guix): keras 2.2.4, h5py 3.6.0
--_000_CY4PR03MB27591E805538BEE2A385256098F59CY4PR03MB2759namp_
Content-Type: text/html; charset="iso-8859-1"
Content-Transfer-Encoding: quoted-printable
<html>
<head>
<meta http-equiv=3D"Content-Type" content=3D"text/html; charset=3Diso-8859-=
1">
<style type=3D"text/css" style=3D"display:none;"> P {margin-top:0;margin-bo=
ttom:0;} </style>
</head>
<body dir=3D"ltr">
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">Hi Guix!</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">It would seem that the current keras version expect=
s an earlier h5py version for loading
models. Specifically, running:</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">from tensorflow.keras.models import load_model</spa=
n></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">model =3D load_model("model.h5")</span></=
div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof" style=3D"font-family: Calibri, Arial, Helveti=
ca, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb=
(255, 255, 255);">
fails with:</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
File "/gnu/store/idfn4l2kxil9id21v1yci4jcw6103fah-profile/lib/p=
ython3.9/site-packages/tensorflow/python/keras/engine/saving.py", line=
228, in load_model
<div class=3D"FluidPluginCopy ContentPasted0"> model_config =
=3D json.loads(model_config.decode('utf-8'))</div>
<div class=3D"FluidPluginCopy ContentPasted0">AttributeError: 'str' object =
has no attribute 'decode'</div>
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
The above works fine in my local pip environment (see below). A quick=
search online indicates that this can be fixed by downgrading h5py to vers=
ion 2.10. The current h5py version in guix is 3.6.</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
My assumption is that this could also be fixed with an upgrade to keras, bu=
t upgrading keras sounds much more involved. For a short-term fix, wo=
uld it be possible to add back a package definition for an earlier h5py in =
addition to the current version? I'm
sure an appropriate version exists somewhere in guix's git history, though=
my git-foo is too weak for me to check.</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
Thanks,</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<div>Zacchae</div>
<div><br>
</div>
<div><br>
</div>
<div>P.S.</div>
<div>working (pip): keras 2.10.0, h5py 3.7.0</div>
<div>not working (current guix): keras 2.2.4, h5py 3.6.0</div>
</div>
</body>
</html>
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Date: Sat, 12 Jul 2025 12:43:31 +0200
From: Andreas Enge <andreas@HIDDEN>
To: 60545-done <at> debbugs.gnu.org
Subject: Close
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Closing this, as we have moved on to newer versions.
If you still see problems, please open an issue on codeberg.
Andreas
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To: Zacchaeus Scheffer <Zacchaeus.Scheffer@HIDDEN>
Subject: bug#60545: closed (Close)
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Your bug report
#60545: Keras h5py Version Mismatch
which was filed against the guix package, has been closed.
The explanation is attached below, along with your original report.
If you require more details, please reply to 60545 <at> debbugs.gnu.org.
--=20
60545: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D60545
GNU Bug Tracking System
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From: Andreas Enge <andreas@HIDDEN>
To: 60545-done <at> debbugs.gnu.org
Subject: Close
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Closing this, as we have moved on to newer versions.
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From: Zacchaeus Scheffer <Zacchaeus.Scheffer@HIDDEN>
To: "bug-guix@HIDDEN" <bug-guix@HIDDEN>
Subject: Keras h5py Version Mismatch
Thread-Topic: Keras h5py Version Mismatch
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--_000_CY4PR03MB27591E805538BEE2A385256098F59CY4PR03MB2759namp_
Content-Type: text/plain; charset="iso-8859-1"
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Hi Guix!
It would seem that the current keras version expects an earlier h5py versio=
n for loading models. Specifically, running:
from tensorflow.keras.models import load_model
model =3D load_model("model.h5")
fails with:
File "/gnu/store/idfn4l2kxil9id21v1yci4jcw6103fah-profile/lib/python3.9/s=
ite-packages/tensorflow/python/keras/engine/saving.py", line 228, in load_m=
odel
model_config =3D json.loads(model_config.decode('utf-8'))
AttributeError: 'str' object has no attribute 'decode'
The above works fine in my local pip environment (see below). A quick sear=
ch online indicates that this can be fixed by downgrading h5py to version 2=
.10. The current h5py version in guix is 3.6.
My assumption is that this could also be fixed with an upgrade to keras, bu=
t upgrading keras sounds much more involved. For a short-term fix, would i=
t be possible to add back a package definition for an earlier h5py in addit=
ion to the current version? I'm sure an appropriate version exists somewhe=
re in guix's git history, though my git-foo is too weak for me to check.
Thanks,
Zacchae
P.S.
working (pip): keras 2.10.0, h5py 3.7.0
not working (current guix): keras 2.2.4, h5py 3.6.0
--_000_CY4PR03MB27591E805538BEE2A385256098F59CY4PR03MB2759namp_
Content-Type: text/html; charset="iso-8859-1"
Content-Transfer-Encoding: quoted-printable
<html>
<head>
<meta http-equiv=3D"Content-Type" content=3D"text/html; charset=3Diso-8859-=
1">
<style type=3D"text/css" style=3D"display:none;"> P {margin-top:0;margin-bo=
ttom:0;} </style>
</head>
<body dir=3D"ltr">
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">Hi Guix!</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">It would seem that the current keras version expect=
s an earlier h5py version for loading
models. Specifically, running:</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">from tensorflow.keras.models import load_model</spa=
n></div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);">model =3D load_model("model.h5")</span></=
div>
<div class=3D"elementToProof"><span style=3D"font-family: Calibri, Arial, H=
elvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-colo=
r: rgb(255, 255, 255);"><br>
</span></div>
<div class=3D"elementToProof" style=3D"font-family: Calibri, Arial, Helveti=
ca, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); background-color: rgb=
(255, 255, 255);">
fails with:</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
File "/gnu/store/idfn4l2kxil9id21v1yci4jcw6103fah-profile/lib/p=
ython3.9/site-packages/tensorflow/python/keras/engine/saving.py", line=
228, in load_model
<div class=3D"FluidPluginCopy ContentPasted0"> model_config =
=3D json.loads(model_config.decode('utf-8'))</div>
<div class=3D"FluidPluginCopy ContentPasted0">AttributeError: 'str' object =
has no attribute 'decode'</div>
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
The above works fine in my local pip environment (see below). A quick=
search online indicates that this can be fixed by downgrading h5py to vers=
ion 2.10. The current h5py version in guix is 3.6.</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
My assumption is that this could also be fixed with an upgrade to keras, bu=
t upgrading keras sounds much more involved. For a short-term fix, wo=
uld it be possible to add back a package definition for an earlier h5py in =
addition to the current version? I'm
sure an appropriate version exists somewhere in guix's git history, though=
my git-foo is too weak for me to check.</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<br>
</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
Thanks,</div>
<div class=3D"elementToProof ContentPasted0" style=3D"font-family: Calibri,=
Arial, Helvetica, sans-serif; font-size: 12pt; color: rgb(0, 0, 0); backgr=
ound-color: rgb(255, 255, 255);">
<div>Zacchae</div>
<div><br>
</div>
<div><br>
</div>
<div>P.S.</div>
<div>working (pip): keras 2.10.0, h5py 3.7.0</div>
<div>not working (current guix): keras 2.2.4, h5py 3.6.0</div>
</div>
</body>
</html>
--_000_CY4PR03MB27591E805538BEE2A385256098F59CY4PR03MB2759namp_--
------------=_1752317044-18789-1--
MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@HIDDEN From: help-debbugs@HIDDEN (GNU bug Tracking System) To: Andreas Enge <andreas@HIDDEN> Subject: bug#60608: closed (keras is broken =?UTF-8?Q?=E2=80=93>?= package bazel?) CC: tracker <at> debbugs.gnu.org Message-ID: <handler.60608.D60545.175231702318627.ackdone <at> debbugs.gnu.org> References: <aHI8U8xi7UeZRFQi@jurong> <87h6x32wdz.fsf@HIDDEN> X-Gnu-PR-Message: closed 60608 X-Gnu-PR-Package: guix Date: Sat, 12 Jul 2025 10:44:04 +0000 Content-Type: multipart/mixed; boundary="----------=_1752317044-18789-2" This is a multi-part message in MIME format... ------------=_1752317044-18789-2 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset=utf-8 Your message dated Sat, 12 Jul 2025 12:43:31 +0200 with message-id <aHI8U8xi7UeZRFQi@jurong> and subject line Close has caused the debbugs.gnu.org bug report #60545, regarding keras is broken =E2=80=93> package bazel? to be marked as done. (If you believe you have received this mail in error, please contact help-debbugs@HIDDEN) --=20 60545: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D60545 GNU Bug Tracking System Contact help-debbugs@HIDDEN with problems ------------=_1752317044-18789-2 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 6 Jan 2023 21:20:22 +0000 Received: from localhost ([127.0.0.1]:55948 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1pDu8T-0003uz-Pj for submit <at> debbugs.gnu.org; Fri, 06 Jan 2023 16:20:22 -0500 Received: from lists.gnu.org ([209.51.188.17]:58150) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <rekado@HIDDEN>) id 1pDu8S-0003ur-2z for submit <at> debbugs.gnu.org; Fri, 06 Jan 2023 16:20:20 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <rekado@HIDDEN>) id 1pDu8Q-0001JZ-L5 for bug-guix@HIDDEN; Fri, 06 Jan 2023 16:20:18 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <rekado@HIDDEN>) id 1pDu8O-0005GB-P2 for bug-guix@HIDDEN; Fri, 06 Jan 2023 16:20:18 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1673040012; cv=none; d=zohomail.com; s=zohoarc; b=mgtIYpS0cRf3ibWw8c5R3l2FmmyNq+2PtdybYA51Hm+skxE6b5QC2ZG8U93L3uNOfX9BMLEmkHiw8EV0i5aWpBNlCCXLXAoJUx6rTYjjrwB22s8+mo0yF5b4YLi3wReL5tfVvVBk4aQ2jwBdCZD8ndFVR7V2uR2W0ScSQDjEQsk= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1673040012; h=Content-Type:Content-Transfer-Encoding:Date:From:MIME-Version:Message-ID:Subject:To; bh=teqsX1ZGYyS4bkLra15wyzYDs83vf0+MQQacA2GNC04=; b=J+bOpPEJ5l9mr4YxA1OYNqExIT3zqKVOwu36TyQWp2VnP7D9Ph83zRxtvZzXIOK6waWQLf5h5E7O+j8QpZmtODaAWHNUmae6pcX9jEFqt4fsh1OFP7RVmAuKgdvKWGDiKlvettbP+RXBcd03hyXx7LbvUas+HpXJ2hdxB+Jv9es= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@HIDDEN; dmarc=pass header.from=<rekado@HIDDEN> DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1673040012; s=zoho; d=elephly.net; i=rekado@HIDDEN; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To:Cc; bh=teqsX1ZGYyS4bkLra15wyzYDs83vf0+MQQacA2GNC04=; b=XhNVvDCVuegu+1qKaD7MpjnmA/Ze3HSiorxBeYrCqbdkemO5ajzX9xtu6JKU6eCY u5beKpRETm12EbsHXmT1bMiRe2zeVXa1gmQZk+ab/sjKW52Q59mjLz2cK/+jFDxLFwy kETogPr6gQZO+9WRhLXCdcSuqF0Y5NkHkp1d5xhA= Received: from localhost (227-111-142-46.pool.kielnet.net [46.142.111.227]) by mx.zohomail.com with SMTPS id 1673040011585335.52493028765923; Fri, 6 Jan 2023 13:20:11 -0800 (PST) User-agent: mu4e 1.8.13; emacs 28.2 From: Ricardo Wurmus <rekado@HIDDEN> To: bug-guix@HIDDEN Subject: keras is broken =?utf-8?Q?=E2=80=93=3E?= package bazel? Date: Fri, 06 Jan 2023 22:16:56 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87h6x32wdz.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External Received-SPF: pass client-ip=136.143.188.51; envelope-from=rekado@HIDDEN; helo=sender4-of-o51.zoho.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -2.3 (--) We have an old version of keras. This is now broken. It is not compatible with python-h5py > 2.10. Our version of Tensorflow also won=E2=80=99t work with h5py 3. We can=E2=80=99t upgrade keras to anything above 2.2.5 because any later ve= rsion is built with Bazel. We cannot build Bazel, because it needs a big pile of jars that we haven=E2=80=99t packaged yet. Tensorflow > 1.9 also requires Bazel. We should work towards packaging Bazel. Debian has a Bazel bootstrap package, so I=E2=80=99m hopeful that it=E2=80=99s possible to package with = some effort. --=20 Ricardo ------------=_1752317044-18789-2 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 60545-done) by debbugs.gnu.org; 12 Jul 2025 10:43:43 +0000 Received: from localhost ([127.0.0.1]:44445 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1uaXhn-0004qN-0f for submit <at> debbugs.gnu.org; Sat, 12 Jul 2025 06:43:43 -0400 Received: from hera.aquilenet.fr ([185.233.100.1]:50904) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <andreas@HIDDEN>) id 1uaXhk-0004px-VF for 60545-done <at> debbugs.gnu.org; Sat, 12 Jul 2025 06:43:41 -0400 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id EEA055FB; Sat, 12 Jul 2025 12:43:34 +0200 (CEST) Authentication-Results: hera.aquilenet.fr; none X-Virus-Scanned: Debian amavis at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavis, port 10024) with ESMTP id jC9oGvpeGJz5; Sat, 12 Jul 2025 12:43:34 +0200 (CEST) Received: from jurong (86.56.141.77.rev.sfr.net [77.141.56.86]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 51783122; Sat, 12 Jul 2025 12:43:33 +0200 (CEST) Date: Sat, 12 Jul 2025 12:43:31 +0200 From: Andreas Enge <andreas@HIDDEN> To: 60545-done <at> debbugs.gnu.org Subject: Close Message-ID: <aHI8U8xi7UeZRFQi@jurong> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline X-Spamd-Result: default: False [-5.55 / 15.00]; BAYES_HAM(-3.00)[99.99%]; NEURAL_HAM(-2.95)[-0.984]; MID_RHS_NOT_FQDN(0.50)[]; MIME_GOOD(-0.10)[text/plain]; RCVD_COUNT_TWO(0.00)[2]; FROM_EQ_ENVFROM(0.00)[]; MIME_TRACE(0.00)[0:+]; RCPT_COUNT_ONE(0.00)[1]; TO_DN_NONE(0.00)[]; RCVD_VIA_SMTP_AUTH(0.00)[]; RCVD_TLS_ALL(0.00)[]; FROM_HAS_DN(0.00)[]; TO_MATCH_ENVRCPT_ALL(0.00)[]; ARC_NA(0.00)[] X-Rspamd-Action: no action X-Rspamd-Queue-Id: EEA055FB X-Rspamd-Server: hera X-Spamd-Bar: ----- X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 60545-done X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Closing this, as we have moved on to newer versions. If you still see problems, please open an issue on codeberg. Andreas ------------=_1752317044-18789-2--
MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@HIDDEN From: help-debbugs@HIDDEN (GNU bug Tracking System) To: Ricardo Wurmus <rekado@HIDDEN> Subject: bug#60608: closed (Close) Message-ID: <handler.60608.D60545.175231702318627.notifdone <at> debbugs.gnu.org> References: <aHI8U8xi7UeZRFQi@jurong> <87h6x32wdz.fsf@HIDDEN> X-Gnu-PR-Message: they-closed 60608 X-Gnu-PR-Package: guix Reply-To: 60608 <at> debbugs.gnu.org Date: Sat, 12 Jul 2025 10:44:05 +0000 Content-Type: multipart/mixed; boundary="----------=_1752317045-18789-3" This is a multi-part message in MIME format... ------------=_1752317045-18789-3 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #60545: keras is broken =E2=80=93> package bazel? which was filed against the guix package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 60608 <at> debbugs.gnu.org. --=20 60545: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D60545 GNU Bug Tracking System Contact help-debbugs@HIDDEN with problems ------------=_1752317045-18789-3 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 60545-done) by debbugs.gnu.org; 12 Jul 2025 10:43:43 +0000 Received: from localhost ([127.0.0.1]:44445 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1uaXhn-0004qN-0f for submit <at> debbugs.gnu.org; Sat, 12 Jul 2025 06:43:43 -0400 Received: from hera.aquilenet.fr ([185.233.100.1]:50904) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <andreas@HIDDEN>) id 1uaXhk-0004px-VF for 60545-done <at> debbugs.gnu.org; Sat, 12 Jul 2025 06:43:41 -0400 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id EEA055FB; Sat, 12 Jul 2025 12:43:34 +0200 (CEST) Authentication-Results: hera.aquilenet.fr; none X-Virus-Scanned: Debian amavis at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavis, port 10024) with ESMTP id jC9oGvpeGJz5; Sat, 12 Jul 2025 12:43:34 +0200 (CEST) Received: from jurong (86.56.141.77.rev.sfr.net [77.141.56.86]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 51783122; Sat, 12 Jul 2025 12:43:33 +0200 (CEST) Date: Sat, 12 Jul 2025 12:43:31 +0200 From: Andreas Enge <andreas@HIDDEN> To: 60545-done <at> debbugs.gnu.org Subject: Close Message-ID: <aHI8U8xi7UeZRFQi@jurong> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline X-Spamd-Result: default: False [-5.55 / 15.00]; BAYES_HAM(-3.00)[99.99%]; NEURAL_HAM(-2.95)[-0.984]; MID_RHS_NOT_FQDN(0.50)[]; MIME_GOOD(-0.10)[text/plain]; RCVD_COUNT_TWO(0.00)[2]; FROM_EQ_ENVFROM(0.00)[]; MIME_TRACE(0.00)[0:+]; RCPT_COUNT_ONE(0.00)[1]; TO_DN_NONE(0.00)[]; RCVD_VIA_SMTP_AUTH(0.00)[]; RCVD_TLS_ALL(0.00)[]; FROM_HAS_DN(0.00)[]; TO_MATCH_ENVRCPT_ALL(0.00)[]; ARC_NA(0.00)[] X-Rspamd-Action: no action X-Rspamd-Queue-Id: EEA055FB X-Rspamd-Server: hera X-Spamd-Bar: ----- X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 60545-done X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Closing this, as we have moved on to newer versions. If you still see problems, please open an issue on codeberg. Andreas ------------=_1752317045-18789-3 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 6 Jan 2023 21:20:22 +0000 Received: from localhost ([127.0.0.1]:55948 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1pDu8T-0003uz-Pj for submit <at> debbugs.gnu.org; Fri, 06 Jan 2023 16:20:22 -0500 Received: from lists.gnu.org ([209.51.188.17]:58150) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <rekado@HIDDEN>) id 1pDu8S-0003ur-2z for submit <at> debbugs.gnu.org; Fri, 06 Jan 2023 16:20:20 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <rekado@HIDDEN>) id 1pDu8Q-0001JZ-L5 for bug-guix@HIDDEN; Fri, 06 Jan 2023 16:20:18 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <rekado@HIDDEN>) id 1pDu8O-0005GB-P2 for bug-guix@HIDDEN; Fri, 06 Jan 2023 16:20:18 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1673040012; cv=none; d=zohomail.com; s=zohoarc; b=mgtIYpS0cRf3ibWw8c5R3l2FmmyNq+2PtdybYA51Hm+skxE6b5QC2ZG8U93L3uNOfX9BMLEmkHiw8EV0i5aWpBNlCCXLXAoJUx6rTYjjrwB22s8+mo0yF5b4YLi3wReL5tfVvVBk4aQ2jwBdCZD8ndFVR7V2uR2W0ScSQDjEQsk= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1673040012; h=Content-Type:Content-Transfer-Encoding:Date:From:MIME-Version:Message-ID:Subject:To; bh=teqsX1ZGYyS4bkLra15wyzYDs83vf0+MQQacA2GNC04=; b=J+bOpPEJ5l9mr4YxA1OYNqExIT3zqKVOwu36TyQWp2VnP7D9Ph83zRxtvZzXIOK6waWQLf5h5E7O+j8QpZmtODaAWHNUmae6pcX9jEFqt4fsh1OFP7RVmAuKgdvKWGDiKlvettbP+RXBcd03hyXx7LbvUas+HpXJ2hdxB+Jv9es= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@HIDDEN; dmarc=pass header.from=<rekado@HIDDEN> DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1673040012; s=zoho; d=elephly.net; i=rekado@HIDDEN; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To:Cc; bh=teqsX1ZGYyS4bkLra15wyzYDs83vf0+MQQacA2GNC04=; b=XhNVvDCVuegu+1qKaD7MpjnmA/Ze3HSiorxBeYrCqbdkemO5ajzX9xtu6JKU6eCY u5beKpRETm12EbsHXmT1bMiRe2zeVXa1gmQZk+ab/sjKW52Q59mjLz2cK/+jFDxLFwy kETogPr6gQZO+9WRhLXCdcSuqF0Y5NkHkp1d5xhA= Received: from localhost (227-111-142-46.pool.kielnet.net [46.142.111.227]) by mx.zohomail.com with SMTPS id 1673040011585335.52493028765923; Fri, 6 Jan 2023 13:20:11 -0800 (PST) User-agent: mu4e 1.8.13; emacs 28.2 From: Ricardo Wurmus <rekado@HIDDEN> To: bug-guix@HIDDEN Subject: keras is broken =?utf-8?Q?=E2=80=93=3E?= package bazel? Date: Fri, 06 Jan 2023 22:16:56 +0100 X-URL: https://elephly.net X-PGP-Key: https://elephly.net/rekado.pubkey X-PGP-Fingerprint: BCA6 89B6 3655 3801 C3C6 2150 197A 5888 235F ACAC Message-ID: <87h6x32wdz.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External Received-SPF: pass client-ip=136.143.188.51; envelope-from=rekado@HIDDEN; helo=sender4-of-o51.zoho.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -2.3 (--) We have an old version of keras. This is now broken. It is not compatible with python-h5py > 2.10. Our version of Tensorflow also won=E2=80=99t work with h5py 3. We can=E2=80=99t upgrade keras to anything above 2.2.5 because any later ve= rsion is built with Bazel. We cannot build Bazel, because it needs a big pile of jars that we haven=E2=80=99t packaged yet. Tensorflow > 1.9 also requires Bazel. We should work towards packaging Bazel. Debian has a Bazel bootstrap package, so I=E2=80=99m hopeful that it=E2=80=99s possible to package with = some effort. --=20 Ricardo ------------=_1752317045-18789-3--
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