Received: (at 60793) by debbugs.gnu.org; 17 Jan 2023 08:39:37 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue Jan 17 03:39:37 2023 Received: from localhost ([127.0.0.1]:35610 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1pHhVJ-0005An-0u for submit <at> debbugs.gnu.org; Tue, 17 Jan 2023 03:39:37 -0500 Received: from mail-wr1-f45.google.com ([209.85.221.45]:44625) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <zimon.toutoune@HIDDEN>) id 1pHhVA-0005AG-Uw for 60793 <at> debbugs.gnu.org; Tue, 17 Jan 2023 03:39:33 -0500 Received: by mail-wr1-f45.google.com with SMTP id bk16so29742177wrb.11 for <60793 <at> debbugs.gnu.org>; Tue, 17 Jan 2023 00:39:28 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:message-id:date:references :in-reply-to:subject:cc:to:from:from:to:cc:subject:date:message-id :reply-to; bh=YQWIr+TnOsSE9hM2ex06hK/n7fhT0Fi66+aby1b5tbk=; b=P5mzqkpxeayA9xbN7nGYNv6ugxrUHlg+CrE8t+Hp5Dxi5uh2deZagDq9SHLH3QcQrW wt8GGdpnO5jvXka0P3UIguhMuhv0DygNnX6KyGh+n6UpAMFCpvMLYExyixvAVRj8Oa18 yS+Mv+ASo+yLj8TJAn8pW8jDXPfGoGr7SPbHuI5CXnSMRC8k/LvXcFRFXEb/wBPctneV tiLOAorg/AUyKbG4PX1xkAVO/Nlc8/yQztovY+xUMxoLNVpRXE/kcWxo93c0obFjY++/ 34obhmgG7DvuBXrFsW+Vi2NqdDINOlX6gjpX79KGhSmoNfAKAdwAzw2gPwvfi8uLknfl 8L1A== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:message-id:date:references :in-reply-to:subject:cc:to:from:x-gm-message-state:from:to:cc :subject:date:message-id:reply-to; bh=YQWIr+TnOsSE9hM2ex06hK/n7fhT0Fi66+aby1b5tbk=; b=dT6/o0/253skUmkEsST8tOwSsz18FofU8ZPpRjJVXekTT3J1zHeg/cbbDEKDyexM74 Ic76BmbYWrpdb/whXu5sSHpYgUflouLdiNr77+4NBmE8+EMuWs1hG7+5Odd6s9kjbG78 E0ggW+WjXj+Wazop9ukkkzcwP3ZKrMiDRJyV/UctqWU1FaNWjFIQZRm9Uk5qVQoj3W+k 8KkatK/BDVMCXpLww6It23LMMTAMjixKeMZO2kS68+97eM5MW2KElVxz6DuUT3ervl5e nnDOSOfZUijPhvmzQ8LeEpCP2pbtvXqjh1M+9WtXpl6sMUC+CRxXJ5Okrp8fNxE0jxQI VqZg== X-Gm-Message-State: AFqh2kqsUykf09hvvuRcQ2hRv7Ak6CQfNVAarml1maADOi/2ed4OFchL bR47w+ottrmVd1pigdygNWSVhchBJgc= X-Google-Smtp-Source: AMrXdXvShoa2h43jOcyCngXKppKlP2d75wqmFthJbCmZzpfG7kuOoBes/5oetKFce2tmD44AjtSxPA== X-Received: by 2002:a5d:634a:0:b0:2bd:e0e8:6951 with SMTP id b10-20020a5d634a000000b002bde0e86951mr413482wrw.5.1673944762836; Tue, 17 Jan 2023 00:39:22 -0800 (PST) Received: from lili ([2a01:e0a:59b:9120:65d2:2476:f637:db1e]) by smtp.gmail.com with ESMTPSA id s2-20020adff802000000b00241bd7a7165sm28230594wrp.82.2023.01.17.00.39.21 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 17 Jan 2023 00:39:22 -0800 (PST) From: Simon Tournier <zimon.toutoune@HIDDEN> To: Sharlatan Hellseher <sharlatanus@HIDDEN> Subject: Re: [bug#60793] [PATCH] gnu: Add julia-cfitsio-jll. In-Reply-To: <CAO+9K5rq73BAw28ewe3hvOuuCvq8u3=spKy2ZC_YOBDU73=P5w@HIDDEN> References: <20230113221658.8158-1-sharlatanus@HIDDEN> <87zgais8z5.fsf@HIDDEN> <CAO+9K5rq73BAw28ewe3hvOuuCvq8u3=spKy2ZC_YOBDU73=P5w@HIDDEN> Date: Tue, 17 Jan 2023 09:03:53 +0100 Message-ID: <86a62hoady.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 60793 Cc: 60793 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Hi, On Mon, 16 Jan 2023 at 20:36, Sharlatan Hellseher <sharlatanus@HIDDEN> w= rote: > Yes it's a long journey to bring Julia's Astronomical projects to > Guix. Cool! Thank you for this effort. > I've got a question on how to group Julia packages related just to > Astronomy. gnu/packages/astronomy.scm contains python bindings to cfitsio, > wcs and erfa would I follow the same pass and add Julia packages next to > them? Well, I think all Julia packages should go to gnu/packages/julia-xyz.scm with the prefix =E2=80=99julia-=E2=80=99 for the symbol and the package nam= e. If, or when, the Julia packages related to astronomy will be too many, then it will be possible to just move them to gnu/packages/julia-astronomy.scm. Last, when writing new Julia packages, please consider some implicit conventions in these Julia-related modules: + sort alphabetically, package name and inputs, + if one test does not pass, please disallow it using something like: =E2=80=99#~(modify-phases %standard-phases (add-after 'link-depot 'skip-failing-test=E2=80=99 (gexp and after link-depot), + try set the packages used by the tests under native-inputs. Cheers, simon
guix-patches@HIDDEN:bug#60793; Package guix-patches.
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From: Sharlatan Hellseher <sharlatanus@HIDDEN>
Date: Mon, 16 Jan 2023 20:36:03 +0000
Message-ID: <CAO+9K5rq73BAw28ewe3hvOuuCvq8u3=spKy2ZC_YOBDU73=P5w@HIDDEN>
Subject: Re: [bug#60793] [PATCH] gnu: Add julia-cfitsio-jll.
To: Simon Tournier <zimon.toutoune@HIDDEN>
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Hi Simon,
Thanks for your review and comments.
Yes it's a long journey to bring Julia's Astronomical projects to Guix.
Here is my plan:
https://git.sr.ht/~hellseher/ffab/tree/main/item/org/astronomy.org#L1202
cfitsio, wcs and erfa would be essential jll bindings for base Julia
packages.
I've got a question on how to group Julia packages related just to
Astronomy. gnu/packages/astronomy.scm contains python bindings to cfitsio,
wcs and erfa would I follow the same pass and add Julia packages next to
them?
Regards,
Oleg
On Mon, 16 Jan 2023, 18:36 Simon Tournier, <zimon.toutoune@HIDDEN> wrote:
> Hi,
>
> On ven., 13 janv. 2023 at 22:16, Sharlatan Hellseher <
> sharlatanus@HIDDEN> wrote:
> > * gnu/packages/julia-jll.scm (julia-cfitsio-jll): New variable.
>
> Thank for this patch.
>
> Well, out of curiosity, why is this package required? I mean, usually
> JLL packages are binding to access from Julia to some libraries.
> Therefore, do you plan to use this package for another regular Julia
> package?
>
>
> > + #:use-module (guix gexp)
>
> [...]
>
> > + #~(modify-phases %standard-phases
> > + (add-after 'link-depot 'override-binary-path
> > + (lambda* (#:key inputs #:allow-other-keys)
>
> [...]
>
> > + (assoc-ref inputs "cfitsio") "\")\n"))))
>
> I do not think (guix gexp) is required here. For instance, other
> packages just use, for instance:
>
> --8<---------------cut here---------------start------------->8---
> (arguments
> '(#:tests? #f ; no runtests
> #:phases
> (modify-phases %standard-phases
> (add-after 'link-depot 'override-binary-path
> (lambda* (#:key inputs #:allow-other-keys)
> (map
> (lambda (wrapper)
> (substitute* wrapper
> (("artifact\"FFMPEG\"")
> (string-append "\"" (assoc-ref inputs "ffmpeg")
> "\""))))
> ;; There's a Julia file for each platform, override them all
> (find-files "src/wrappers/" "\\.jl$")))))))
> --8<---------------cut here---------------end--------------->8---
>
>
> Cheers,
> simon
>
--000000000000c9c70105f2678833
Content-Type: text/html; charset="UTF-8"
Content-Transfer-Encoding: quoted-printable
<div dir=3D"auto">Hi Simon,<div dir=3D"auto"><br></div><div dir=3D"auto">Th=
anks for your review and comments.</div><div dir=3D"auto"><br></div><div di=
r=3D"auto">Yes it's a long journey to bring Julia's Astronomical pr=
ojects to Guix.</div><div dir=3D"auto"><br></div><div dir=3D"auto">Here is =
my plan:=C2=A0<a href=3D"https://git.sr.ht/~hellseher/ffab/tree/main/item/o=
rg/astronomy.org#L1202">https://git.sr.ht/~hellseher/ffab/tree/main/item/or=
g/astronomy.org#L1202</a></div><div dir=3D"auto"><br></div><div dir=3D"auto=
">cfitsio, wcs and erfa would be essential jll bindings for base Julia pack=
ages.</div><div dir=3D"auto"><br></div><div dir=3D"auto">I've got a que=
stion on how to group Julia packages related just to Astronomy. gnu/package=
s/astronomy.scm contains python bindings to cfitsio, wcs and erfa would I f=
ollow the same pass and add Julia packages next to them?</div><div dir=3D"a=
uto"><br></div><div dir=3D"auto">Regards,</div><div dir=3D"auto">Oleg</div>=
</div><br><div class=3D"gmail_quote"><div dir=3D"ltr" class=3D"gmail_attr">=
On Mon, 16 Jan 2023, 18:36 Simon Tournier, <<a href=3D"mailto:zimon.tout=
oune@HIDDEN" target=3D"_blank" rel=3D"noreferrer">zimon.toutoune@HIDDEN=
om</a>> wrote:<br></div><blockquote class=3D"gmail_quote" style=3D"margi=
n:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
<br>
On ven., 13 janv. 2023 at 22:16, Sharlatan Hellseher <<a href=3D"mailto:=
sharlatanus@HIDDEN" rel=3D"noreferrer noreferrer" target=3D"_blank">shar=
latanus@HIDDEN</a>> wrote:<br>
> * gnu/packages/julia-jll.scm (julia-cfitsio-jll): New variable.<br>
<br>
Thank for this patch.<br>
<br>
Well, out of curiosity, why is this package required?=C2=A0 I mean, usually=
<br>
JLL packages are binding to access from Julia to some libraries.<br>
Therefore, do you plan to use this package for another regular Julia<br>
package?<br>
<br>
<br>
> +=C2=A0 #:use-module (guix gexp)<br>
<br>
[...]<br>
<br>
> +=C2=A0 =C2=A0 =C2=A0 #~(modify-phases %standard-phases<br>
> +=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 (add-after 'link-depot 'ov=
erride-binary-path<br>
> +=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 (lambda* (#:key inputs #:al=
low-other-keys)<br>
<br>
[...]<br>
<br>
> +=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0=
=C2=A0(assoc-ref inputs "cfitsio") "\")\n"))))<br=
>
<br>
I do not think (guix gexp) is required here.=C2=A0 For instance, other<br>
packages just use, for instance:<br>
<br>
--8<---------------cut here---------------start------------->8---<br>
=C2=A0 =C2=A0 (arguments<br>
=C2=A0 =C2=A0 =C2=A0'(#:tests? #f ; no runtests<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0#:phases<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0(modify-phases %standard-phases<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0(add-after 'link-depot 'override-=
binary-path<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0(lambda* (#:key inputs #:allow-oth=
er-keys)<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0(map<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0(lambda (wrapper)<br=
>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0(substitute* =
wrapper<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0((&quo=
t;artifact\"FFMPEG\"")<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 (stri=
ng-append "\"" (assoc-ref inputs "ffmpeg") "\=
""))))<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0;; There's a Jul=
ia file for each platform, override them all<br>
=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0(find-files "sr=
c/wrappers/" "\\.jl$")))))))<br>
--8<---------------cut here---------------end--------------->8---<br>
<br>
<br>
Cheers,<br>
simon<br>
</blockquote></div>
--000000000000c9c70105f2678833--
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From: Simon Tournier <zimon.toutoune@HIDDEN>
To: Sharlatan Hellseher <sharlatanus@HIDDEN>, 60793 <at> debbugs.gnu.org
Subject: Re: [bug#60793] [PATCH] gnu: Add julia-cfitsio-jll.
In-Reply-To: <20230113221658.8158-1-sharlatanus@HIDDEN>
References: <20230113221658.8158-1-sharlatanus@HIDDEN>
Date: Mon, 16 Jan 2023 18:08:30 +0100
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Hi,
On ven., 13 janv. 2023 at 22:16, Sharlatan Hellseher <sharlatanus@HIDDEN> wrote:
> * gnu/packages/julia-jll.scm (julia-cfitsio-jll): New variable.
Thank for this patch.
Well, out of curiosity, why is this package required? I mean, usually
JLL packages are binding to access from Julia to some libraries.
Therefore, do you plan to use this package for another regular Julia
package?
> + #:use-module (guix gexp)
[...]
> + #~(modify-phases %standard-phases
> + (add-after 'link-depot 'override-binary-path
> + (lambda* (#:key inputs #:allow-other-keys)
[...]
> + (assoc-ref inputs "cfitsio") "\")\n"))))
I do not think (guix gexp) is required here. For instance, other
packages just use, for instance:
--8<---------------cut here---------------start------------->8---
(arguments
'(#:tests? #f ; no runtests
#:phases
(modify-phases %standard-phases
(add-after 'link-depot 'override-binary-path
(lambda* (#:key inputs #:allow-other-keys)
(map
(lambda (wrapper)
(substitute* wrapper
(("artifact\"FFMPEG\"")
(string-append "\"" (assoc-ref inputs "ffmpeg") "\""))))
;; There's a Julia file for each platform, override them all
(find-files "src/wrappers/" "\\.jl$")))))))
--8<---------------cut here---------------end--------------->8---
Cheers,
simon
guix-patches@HIDDEN:bug#60793; Package guix-patches.
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From: Sharlatan Hellseher <sharlatanus@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH] gnu: Add julia-cfitsio-jll.
Date: Fri, 13 Jan 2023 22:16:58 +0000
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* gnu/packages/julia-jll.scm (julia-cfitsio-jll): New variable.
---
gnu/packages/julia-jll.scm | 45 ++++++++++++++++++++++++++++++++++++++
1 file changed, 45 insertions(+)
diff --git a/gnu/packages/julia-jll.scm b/gnu/packages/julia-jll.scm
index 2b0f644736..364088c4b0 100644
--- a/gnu/packages/julia-jll.scm
+++ b/gnu/packages/julia-jll.scm
@@ -3,6 +3,7 @@
;;; Copyright © 2021 Simon Tournier <zimon.toutoune@HIDDEN>
;;; Copyright © 2021 Efraim Flashner <efraim@HIDDEN>
;;; Copyright © 2021 Jean-Baptiste Volatier <jbv@HIDDEN>
+;;; Copyright © 2023 Sharlatan Hellseher <sharlatanus@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -21,12 +22,14 @@
(define-module (gnu packages julia-jll)
#:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix gexp)
#:use-module (guix packages)
#:use-module (guix git-download)
#:use-module (guix utils)
#:use-module (guix build-system julia)
#:use-module (gnu packages)
#:use-module (gnu packages audio)
+ #:use-module (gnu packages astronomy)
#:use-module (gnu packages base)
#:use-module (gnu packages compression)
#:use-module (gnu packages fontutils)
@@ -146,6 +149,48 @@ (define-public julia-cairo-jll
(description "This package provides a wrapper for the cairo library.")
(license license:expat)))
+(define-public julia-cfitsio-jll
+ (package
+ (name "julia-cfitsio-jll")
+ (version "4.0.0+0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaBinaryWrappers/CFITSIO_jll.jl")
+ (commit (string-append "CFITSIO-v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1k0mqmpyfjr3ibcmda08llw8m166zw0n3lh5y5aj81q37lrxw990"))))
+ (build-system julia-build-system)
+ (arguments
+ (list
+ #:tests? #f ; no runtests
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'link-depot 'override-binary-path
+ (lambda* (#:key inputs #:allow-other-keys)
+ (map
+ (lambda (wrapper)
+ (substitute* wrapper
+ (("using LibCURL_jll") "") ; Not require to download cfitsio.
+ (("using Zlib_jll") "") ; Not require to upnpack not donwloaded archvie.
+ (("generate_init_header.*") "generate_init_header()\n" )
+ (("generate_wrapper_header.*")
+ (string-append
+ "generate_wrapper_header(\"CFITSIO\", \""
+ (assoc-ref inputs "cfitsio") "\")\n"))))
+ ;; There's a Julia file for each platform, override them all
+ (find-files "src/wrappers/" "\\.jl$")))))))
+ (inputs
+ (list cfitsio))
+ (propagated-inputs
+ (list julia-jllwrappers))
+ (home-page "https://github.com/JuliaBinaryWrappers/CFITSIO_jll.jl")
+ (synopsis "cfitsio library wrappers")
+ (description "This package provides a wrapper for the cfitsio library.")
+ (license license:expat)))
+
(define-public julia-compilersupportlibraries-jll
(package
(name "julia-compilersupportlibraries-jll")
--
2.38.1
Sharlatan Hellseher <sharlatanus@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#60793; Package guix-patches.
Full text available.
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