GNU bug report logs - #60878
[PATCH] gnu: Add r-rapiclient and r-anvil.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: "MadalinIonel.Patrascu <at> mdc-berlin.de"
 <MadalinIonel.Patrascu <at> mdc-berlin.de>
To: "guix-patches <at> gnu.org" <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-rapiclient and r-anvil.
Date: Tue, 17 Jan 2023 13:04:25 +0000

[Message part 1 (text/plain, inline)]

[Message part 2 (text/html, inline)]

Message #8 received at 60878 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <60878 <at> debbugs.gnu.org>
Subject: [PATCH 2/2] gnu: Add r-anvil.
Date: Tue, 17 Jan 2023 14:18:23 +0100

* gnu/packages/bioconductor.scm (r-anvil): New variable.
---
 gnu/packages/bioconductor.scm | 41 +++++++++++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ca236bcf75..35aed4b62c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2443,6 +2443,47 @@ (define-public r-animalcules
 to understand their data better and discover new insights.")
     (license license:artistic2.0)))
 
+(define-public r-anvil
+  (package
+    (name "r-anvil")
+    (version "1.10.1")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AnVIL" version))
+              (sha256
+               (base32
+                "0iqsffkrxv28g9cddx2w05f2dbscwxhh6bpizwa8xaxhvn5bcpsv"))))
+    (properties `((upstream-name . "AnVIL")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biocmanager
+           r-dplyr
+           r-dt
+           r-futile-logger
+           r-htmltools
+           r-httr
+           r-jsonlite
+           r-miniui
+           r-rapiclient
+           r-rlang
+           r-shiny
+           r-tibble
+           r-tidyr
+           r-tidyselect))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/AnVIL")
+    (synopsis "Provides access to AnVIL, Terra, Leonardo and other projects")
+    (description
+     "The AnVIL is a cloud computing resource developed in part by the National
+Human Genome Research Institute.  The AnVIL package provides end-user and developer
+functionality.  For the end-user, AnVIL provides fast binary package installation,
+utitlities for working with Terra/AnVIL table and data resources, and convenient
+functions for file movement to and from Google cloud storage.  For developers,
+AnVIL provides programatic access to the Terra, Leonardo, Rawls, Dockstore, and
+Gen3 RESTful programming interface, including helper functions to transform JSON
+responses to formats more amenable to manipulation in R.")
+    (license license:artistic2.0)))
+
 (define-public r-aldex2
   (package
     (name "r-aldex2")
-- 
2.38.1

Message #11 received at 60878 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <60878 <at> debbugs.gnu.org>
Subject: [PATCH 1/2] gnu: Add r-rapiclient.
Date: Tue, 17 Jan 2023 14:18:22 +0100

* gnu/packages/cran.scm (r-rapiclient): New variable.
---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 3fcbd3b9f6..1914c9d85a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -10252,6 +10252,30 @@ (define-public r-collapsibletree
 the source data frame.")
     (license license:gpl3+)))
 
+(define-public r-rapiclient
+  (package
+    (name "r-rapiclient")
+    (version "0.1.3")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "rapiclient" version))
+              (sha256
+               (base32
+                "1pm4kdga2nz1cpmchdb0ad8gr3bqfm84b1kl32cyc0x3x5rr2syz"))))
+    (properties `((upstream-name . "rapiclient")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-httr
+           r-jsonlite
+           r-yaml))
+    (home-page "https://github.com/bergant/rapiclient")
+    (synopsis "Dynamic OpenAPI/Swagger client")
+    (description
+     "This package access services specified in OpenAPI (formerly Swagger) format.
+It is not a code generator.  The client is generated dynamically as a list of R
+functions.")
+    (license license:expat)))
+
 (define-public r-rappdirs
   (package
     (name "r-rappdirs")

base-commit: 29efa2791dafb042ca8ace77bcf8538fb404d492
-- 
2.38.1

Message #16 received at 60878-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 60878-done <at> debbugs.gnu.org
Subject: Re: [bug#60878] [PATCH 1/2] gnu: Add r-rapiclient.
Date: Sun, 22 Jan 2023 09:16:36 +0100

Hi Mădălin,

I applied this series after minor changes to the descriptions.
Thanks!

-- 
Ricardo

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