Received: (at 61204) by debbugs.gnu.org; 16 Mar 2023 11:26:58 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Thu Mar 16 07:26:58 2023 Received: from localhost ([127.0.0.1]:41379 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1pcll4-0002K5-0V for submit <at> debbugs.gnu.org; Thu, 16 Mar 2023 07:26:58 -0400 Received: from eggs.gnu.org ([209.51.188.92]:34096) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <ludo@HIDDEN>) id 1pcll2-0002Jt-3m for 61204 <at> debbugs.gnu.org; Thu, 16 Mar 2023 07:26:56 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1pclkw-0008Ss-6l; Thu, 16 Mar 2023 07:26:50 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:In-Reply-To:Date:References:Subject:To: From; bh=8fWeEOTgB3bRa4hBoQT7yNr9czcAgwYvQEaCRrFB6PI=; b=h4DgGWQGLqg6v0TckmnJ iBdNvTLC+W6UVkF7Zw4hOUz6lZmIBabYOIB91MfBXHp+cBu6Q2P3GmArXbBlxUjGgq4uJBf/8jaz5 FjAdJphTeebvKgQnQ4C9HkKzU11GZJpwLtyQa1A37MNQJ+lsNXdizA1ebKquPtJsmQnXrw/TxosPP sMMEnXboxjDBehaVj/Gzf5DS2Osg84fd20JtGWzqQYRUksSeTqgQmu+g8s8tAcQRI/qgzxceUn0JN IdChWbPjFBt/mhxE3WPCEDR18LdoscmymCBuG76g2cNVf3nCN05ObC0Ly7JWYzrFY78OZs1k2lUr6 WmW/TOlOU+kkoQ==; Received: from 91-160-117-201.subs.proxad.net ([91.160.117.201] helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1pclkv-0002an-QP; Thu, 16 Mar 2023 07:26:50 -0400 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN> To: Nicolas Graves <ngraves@HIDDEN> Subject: Re: bug#61204: Scilab scientific software References: <87h6w6tcqz.fsf@HIDDEN> <86o7pudiqo.fsf@HIDDEN> Date: Thu, 16 Mar 2023 12:26:47 +0100 In-Reply-To: <86o7pudiqo.fsf@HIDDEN> (Simon Tournier's message of "Wed, 15 Feb 2023 16:57:19 +0100") Message-ID: <87r0tpey2w.fsf_-_@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/28.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 61204 Cc: 61204 <at> debbugs.gnu.org, Simon Tournier <zimon.toutoune@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) Hi Nicolas, Simon Tournier <zimon.toutoune@HIDDEN> skribis: > =E2=80=A6I see two issues about licenses: > > 1. Metis 4 is not free software > 2. Scilab is Cecill v2.1 and not gpl2 as the patch suggests. > > About #2, the fix is easy. :-) > > About #1, it will be difficult. [...] > If Scilab 6 works with Metis 5, then there is no issue with the licenses > and could be included. Could you check whether using Metis 5 is possible, or whether Metis is an optional dependency, or whether scotch:metis can be used (Scotch is another graph partitioner with a Metis compatibility layer)? TIA, Ludo=E2=80=99.
guix-patches@HIDDEN:bug#61204; Package guix-patches.
Full text available.Received: (at 61204) by debbugs.gnu.org; 15 Feb 2023 15:58:40 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Wed Feb 15 10:58:40 2023 Received: from localhost ([127.0.0.1]:33707 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1pSKB5-00008B-Qx for submit <at> debbugs.gnu.org; Wed, 15 Feb 2023 10:58:40 -0500 Received: from mail-wm1-f48.google.com ([209.85.128.48]:35363) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <zimon.toutoune@HIDDEN>) id 1pSKB3-00007H-Hz for 61204 <at> debbugs.gnu.org; Wed, 15 Feb 2023 10:58:37 -0500 Received: by mail-wm1-f48.google.com with SMTP id k8-20020a05600c1c8800b003dc57ea0dfeso1977060wms.0 for <61204 <at> debbugs.gnu.org>; Wed, 15 Feb 2023 07:58:37 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=content-transfer-encoding:mime-version:message-id:date:references :in-reply-to:subject:to:from:from:to:cc:subject:date:message-id :reply-to; bh=7dBUSn1v+7VjxmVP6DAYR9G0v8SDEoeesfIMAzKjVg8=; b=Zla/VD52t0c/jmdSJECsRIQpCu0JA5u3HxaSlrUJLkShpUnw/QRUPNK4mSOygmu1Hb w4TwUCBuGjkqxE9bVSwwuBmpNqHlSsBrSS4WZS6TfjiGDn7cwOcBDnRQMAG+w5+uSTE2 XvFq/ZlXQfHNuriHtgshIqcPJq0WSV3vERBHDVNePpNwfXkrHS4MjwMK8NUri6b6BzQg SgWHgBYf8u23sCaxyTJ9pX68ZUDCaBmKqjZUsCNmc3oHkoo3vyZ7mZ0uEinEPUd/DISH LfUUsolfDz05hQm6+LzDBAGgMk+SFbs9lbH6XYQVtq8gVOAxn96NU5FvntxkP31fV2PA dpyg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=content-transfer-encoding:mime-version:message-id:date:references :in-reply-to:subject:to:from:x-gm-message-state:from:to:cc:subject :date:message-id:reply-to; bh=7dBUSn1v+7VjxmVP6DAYR9G0v8SDEoeesfIMAzKjVg8=; b=LpPqTIdlvGYPmlNi2pwoUjnw2M5t1F6WHohHXCsBGnXbgdnT+zLfixE++z5cp88o2k 0fgvC9XRRkWAu3WJjg4Fh2ZRMRcXdSRNG6gLoEtE2d2r7xDJLZhj85kO6RVNnbmzEWFa ZB5PfWx/AhT+Hi8g0B474nMCnaK0Qzab4ikecW/HMjkGH/2SceSII/2kPSSLJf/FhB1f eugbT6vYcx1hIQP11ic1qz0vSzytK0GbkBh9so8n665/fxWxmN9BerXvu6oKUM/LINpq JBAmJXo+356jjOPL6uJDASuqNoK/Uw2gYs+U1NVivmzaY40Q54nyWz4z21g2ugnmcHl9 c1wg== X-Gm-Message-State: AO0yUKUgoQ3/336v59CPrTjyQn0S79FAJNmQWZTOOosGm7+LfseegfHu B0qh/dJxmL2JEvsdrYfJPVvymUvT2MA= X-Google-Smtp-Source: AK7set8Ujxx9DjlHLoa7sospTv03qqkdv+wAzdyafR5TBrUSuR3bluaGruR+Gg/yoE4qxczHjAazmg== X-Received: by 2002:a1c:f418:0:b0:3e0:b1:c12d with SMTP id z24-20020a1cf418000000b003e000b1c12dmr2884428wma.1.1676476711976; Wed, 15 Feb 2023 07:58:31 -0800 (PST) Received: from lili ([2a01:e0a:59b:9120:65d2:2476:f637:db1e]) by smtp.gmail.com with ESMTPSA id u15-20020a05600c19cf00b003dc53217e07sm2699346wmq.16.2023.02.15.07.58.31 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 15 Feb 2023 07:58:31 -0800 (PST) From: Simon Tournier <zimon.toutoune@HIDDEN> To: Nicolas Graves <ngraves@HIDDEN>, 61204 <at> debbugs.gnu.org Subject: Re: [bug#61204] Scilab scientific software In-Reply-To: <87h6w6tcqz.fsf@HIDDEN> References: <87h6w6tcqz.fsf@HIDDEN> Date: Wed, 15 Feb 2023 16:57:19 +0100 Message-ID: <86o7pudiqo.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 61204 X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Hi, On Wed, 01 Feb 2023 at 02:07, Nicolas Graves via Guix-patches via <guix-pat= ches@HIDDEN> wrote: > I took a job where I have to use the scientific software suite Scilab in > an old version (5.4.1). I'll probably update it during this job. Congrats! > I managed to package this version in the non-graphical version of Scilab > 5.5.X versions this weekend. Cool! Well, I was tweaking and reviewing the series when=E2=80=A6 > It needs some old software libraries (metis@4, suitesparse@3), which > releases are not even in guix's history, and some compilation errors > fixes. =E2=80=A6I see two issues about licenses: 1. Metis 4 is not free software 2. Scilab is Cecill v2.1 and not gpl2 as the patch suggests. About #2, the fix is easy. :-) About #1, it will be difficult. Well, maybe these 3 old versions of Scilab could go to the channel guix-science [1] or guix-science-non-free [2]. If Scilab 6 works with Metis 5, then there is no issue with the licenses and could be included. WDYT? 1: https://github.com/guix-science/guix-science 2: https://github.com/guix-science/guix-science-nonfree Cheers, simon
guix-patches@HIDDEN:bug#61204; Package guix-patches.
Full text available.Received: (at 61204) by debbugs.gnu.org; 11 Feb 2023 10:11:49 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Sat Feb 11 05:11:49 2023 Received: from localhost ([127.0.0.1]:38939 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1pQmrE-0004Jg-Rl for submit <at> debbugs.gnu.org; Sat, 11 Feb 2023 05:11:49 -0500 Received: from 3.mo576.mail-out.ovh.net ([188.165.52.203]:37919) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <ngraves@HIDDEN>) id 1pQmrC-0004JY-Kp for 61204 <at> debbugs.gnu.org; Sat, 11 Feb 2023 05:11:47 -0500 Received: from director11.ghost.mail-out.ovh.net (unknown [10.108.4.136]) by mo576.mail-out.ovh.net (Postfix) with ESMTP id 26EF923CE1 for <61204 <at> debbugs.gnu.org>; Sat, 11 Feb 2023 10:11:44 +0000 (UTC) Received: from ghost-submission-6684bf9d7b-49gmp (unknown [10.110.103.53]) by director11.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 5686D1FDF0; Sat, 11 Feb 2023 10:11:43 +0000 (UTC) Received: from ngraves.fr ([37.59.142.97]) by ghost-submission-6684bf9d7b-49gmp with ESMTPSA id 5n3NGd9p52MNuwAAu1/vhA (envelope-from <ngraves@HIDDEN>); Sat, 11 Feb 2023 10:11:43 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-97G002f25ab1b4-9c2b-4513-aafe-899f85d20486, AEB59A926B3CA8974732914DD79BFDE88446DC77) smtp.auth=ngraves@HIDDEN X-OVh-ClientIp: 81.67.140.142 From: Nicolas Graves <ngraves@HIDDEN> To: Ludovic =?utf-8?Q?Court=C3=A8s?= <ludo@HIDDEN> Subject: Re: [bug#61204] Scilab scientific software In-Reply-To: <87pmahnmp2.fsf@HIDDEN> References: <87h6w6tcqz.fsf@HIDDEN> <87pmahnmp2.fsf@HIDDEN> Date: Sat, 11 Feb 2023 11:11:42 +0100 Message-ID: <87ttzsv7dt.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Ovh-Tracer-Id: 7629097772371468821 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: -100 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgedvhedrudehjedgudefucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucesvcftvggtihhpihgvnhhtshculddquddttddmnecujfgurhephffvvefujghffffkgggtgfesthhqredttddtjeenucfhrhhomheppfhitgholhgrshcuifhrrghvvghsuceonhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrqeenucggtffrrghtthgvrhhnpeffudelkeejveetleeuffejfefftefhhfffuedtteethfelueelveffjedvffdtffenucfkphepuddvjedrtddrtddruddpfeejrdehledrudegvddrleejnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpeeonhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrqedpnhgspghrtghpthhtohepuddprhgtphhtthhopeeiuddvtdegseguvggssghughhsrdhgnhhurdhorhhgpdfovfetjfhoshhtpehmohehjeeipdhmohguvgepshhmthhpohhuth X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 61204 Cc: 61204 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) On 2023-02-11 00:08, Ludovic Court=C3=A8s wrote: > Heh, congrats on the new job, and yay for free software! :-) Thanks! > Looks like we=E2=80=99re missing patch 4/6, which actually adds Scilab. > Did it get stuck on its way? Most likely yes, I've just resent this patch here. --=20 Best regards, Nicolas Graves
guix-patches@HIDDEN:bug#61204; Package guix-patches.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 61204 <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add scilab.
Date: Sat, 11 Feb 2023 11:09:37 +0100
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* gnu/packages/maths.scm (scilab): New variable.
---
gnu/packages/maths.scm | 106 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 106 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 741ecc2798..81dba14674 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -8319,3 +8319,109 @@ (define-public optizelle
provided for applications written in C++ and Python. Parallel
computation is supported via MPI.")
(license license:bsd-2))))
+
+(define-public scilab
+ (package
+ (name "scilab")
+ (version "5.5.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "https://oos.eu-west-2.outscale.com/scilab-releases/"
+ version "/scilab-" version "-src.tar.gz"))
+ (sha256
+ (base32 "1hx57aji5d78brwqcf8a34i1hasm3h4nw46xjg7cgxj09s8yz5kq"))))
+ (build-system gnu-build-system)
+ (native-inputs (list pkg-config gfortran))
+ (inputs (list libxml2
+ `(,pcre "bin")
+ `(,pcre "out")
+ readline
+ hdf5-1.8
+ curl
+ openblas
+ lapack
+ arpack-ng
+ fftw
+ gettext-minimal
+ suitesparse-3
+ tcl
+ tk
+ libx11
+ matio))
+ (arguments
+ `(#:tests? #f
+ #:configure-flags
+ ,#~(list
+ "--enable-relocatable"
+ "--disable-static-system-lib"
+ ;; Disable all java code.
+ "--without-gui"
+ "--without-javasci"
+ "--disable-build-help"
+ "--with-external-scirenderer"
+ ;; Tcl and Tk library locations.
+ (string-append "--with-tcl-include="
+ (string-drop-right
+ (search-input-file %build-inputs "include/tcl.h")
+ (string-length "/tcl.h")))
+ (string-append "--with-tcl-library="
+ (string-drop-right
+ (search-input-directory %build-inputs "lib/tcl8")
+ (string-length "/tcl8")))
+ (string-append "--with-tk-include="
+ (string-drop-right
+ (search-input-file %build-inputs "include/tk.h")
+ (string-length "/tk.h")))
+ (string-append "--with-tk-library="
+ (string-drop-right
+ (search-input-directory %build-inputs "lib/tk8.6")
+ (string-length "/tk8.6")))
+ ;; There are some 2018-fortran errors that are ignored
+ ;; with this fortran compiler flag.
+ "FFLAGS=-fallow-argument-mismatch")
+ #:phases
+ ,#~(modify-phases %standard-phases
+ (add-before 'build 'pre-build
+ (lambda _
+ ;; Fix scilab script.
+ (substitute* "bin/scilab"
+ (("\\/bin\\/ls")
+ (which "ls")))
+ ;; Fix core.start.
+ (substitute* "modules/core/etc/core.start"
+ (("'SCI/modules")
+ "SCI+'/modules"))
+ ;; Fix fortran compilation error.
+ (substitute*
+ "modules/differential_equations/src/fortran/twodq.f"
+ (("node\\(10\\),node1\\(10\\),node2\\(10\\),coef")
+ "node(9),node1(9),node2(9),coef"))
+ ;; Fix C compilation errors.
+ ;; remove &
+ (substitute* "modules/hdf5/src/c/h5_readDataFromFile_v1.c"
+ (("(H5Rdereference\\(_iDatasetId, H5R_OBJECT, )&(.*)\\);$"
+ all common ref)
+ (string-append common ref)))
+ ;; fix multiple definitions
+ (substitute* "modules/tclsci/src/c/TCL_Command.h"
+ (("^__thread")
+ "extern __thread"))
+ (substitute* "modules/tclsci/src/c/InitTclTk.c"
+ (("BOOL TK_Started = FALSE;" all)
+ (string-append all "\n"
+ "__threadId TclThread;" "\n"
+ "__threadSignal InterpReady;" "\n"
+ "__threadSignalLock InterpReadyLock;"
+ "\n")))
+ ;; Set SCIHOME to /tmp before macros compilation.
+ (setenv "SCIHOME" "/tmp"))))))
+ (home-page "https://scilab.org")
+ (synopsis "Software for engineers and scientists")
+ (description "This package provides the non-graphical version of the Scilab
+software for engineers and scientists. Scilab is used for signal processing,
+statistical analysis, image enhancement, fluid dynamics simulations, numerical
+optimization, and modeling, simulation of explicit and implicit dynamical
+systems and symbolic manipulations.")
+ (license license:gpl2)))
--
2.39.1
guix-patches@HIDDEN:bug#61204; Package guix-patches.
Full text available.Received: (at 61204) by debbugs.gnu.org; 10 Feb 2023 23:08:19 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Fri Feb 10 18:08:19 2023 Received: from localhost ([127.0.0.1]:38306 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1pQcV9-0002po-6C for submit <at> debbugs.gnu.org; Fri, 10 Feb 2023 18:08:19 -0500 Received: from eggs.gnu.org ([209.51.188.92]:44310) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <ludo@HIDDEN>) id 1pQcV8-0002pc-By for 61204 <at> debbugs.gnu.org; Fri, 10 Feb 2023 18:08:18 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1pQcV1-00074a-LU; Fri, 10 Feb 2023 18:08:11 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:In-Reply-To:Date:References:Subject:To: From; bh=W2ELF7/tyiY9SO6jX6wtKLY+P5Xql0Hs5SO5ug6v/VA=; b=kp+gAQnXbxv+B0g8TxxU sX9CMatd9nqTTmddJ6XVSeHjLmx3zG2eb6bGjpJYr9kb+9a2DcXHngApGfNjch5FKtxZwuGGxCZxk h0SpHFj9pERnrV9YVwbKlJXWc1g+bOfTh9eV1wa2eiWkvMlgR1cs28+CKKtNHMgquFN2iJ7DEYy5/ i5hgUpUkDBB9bpA2ZbL35Q01GedDJwdPb1AORkw7a/f2FqLFzYUnq+Arbm7uxYw/CLh3xxoQyk5m1 xz9h0HsrF15InPbDThskLkiGDvDC/kesEQOYFbhKz0Yt+oEur4VTmoOGzR9+S8pIwnBjpqRQoeqVC C6MTTsw7/7q3xA==; Received: from 91-160-117-201.subs.proxad.net ([91.160.117.201] helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1pQcV1-0004AX-5w; Fri, 10 Feb 2023 18:08:11 -0500 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN> To: Nicolas Graves <ngraves@HIDDEN> Subject: Re: bug#61204: Scilab scientific software References: <87h6w6tcqz.fsf@HIDDEN> Date: Sat, 11 Feb 2023 00:08:09 +0100 In-Reply-To: <87h6w6tcqz.fsf@HIDDEN> (Nicolas Graves's message of "Wed, 01 Feb 2023 02:07:00 +0100") Message-ID: <87pmahnmp2.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/28.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 61204 Cc: 61204 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) Hi Nicolas, Nicolas Graves <ngraves@HIDDEN> skribis: > I took a job where I have to use the scientific software suite Scilab in > an old version (5.4.1). I'll probably update it during this job. Heh, congrats on the new job, and yay for free software! :-) > I managed to package this version in the non-graphical version of Scilab > 5.5.X versions this weekend. > > It needs some old software libraries (metis@4, suitesparse@3), which > releases are not even in guix's history, and some compilation errors > fixes. > > I go ahead and propose these patches in the next patches. I may continue > to work to propose updates up to the latest versions, but they need some > more work. Looks like we=E2=80=99re missing patch 4/6, which actually adds Scilab. Did it get stuck on its way? Ludo=E2=80=99.
guix-patches@HIDDEN:bug#61204; Package guix-patches.
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* gnu/packages/maths.scm (scilab): Update to 5.5.2.
---
gnu/packages/maths.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 5f944a1d50..bdc9e75498 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -8324,7 +8324,7 @@ (define-public optizelle
(define-public scilab
(package
(name "scilab")
- (version "5.5.1")
+ (version "5.5.2")
(source
(origin
(method url-fetch)
@@ -8332,7 +8332,7 @@ (define-public scilab
(string-append "https://oos.eu-west-2.outscale.com/scilab-releases/"
version "/scilab-" version "-src.tar.gz"))
(sha256
- (base32 "0ab7h0hdra4fjy505pivg6dbgcdxa4vd30g8gjhk8x7i28z24mn0"))))
+ (base32 "0phg9pn24yw98hbh475ik84dnikf1225b2knh7qbhdbdx6fm2d57"))))
(build-system gnu-build-system)
(native-inputs (list pkg-config gfortran))
(inputs (list libxml2
--
2.39.1
guix-patches@HIDDEN:bug#61204; Package guix-patches.
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* gnu/packages/maths.scm (scilab): Update to 5.5.1.
---
gnu/packages/maths.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 937c829a0b..5f944a1d50 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -8324,7 +8324,7 @@ (define-public optizelle
(define-public scilab
(package
(name "scilab")
- (version "5.5.0")
+ (version "5.5.1")
(source
(origin
(method url-fetch)
@@ -8332,7 +8332,7 @@ (define-public scilab
(string-append "https://oos.eu-west-2.outscale.com/scilab-releases/"
version "/scilab-" version "-src.tar.gz"))
(sha256
- (base32 "1hx57aji5d78brwqcf8a34i1hasm3h4nw46xjg7cgxj09s8yz5kq"))))
+ (base32 "0ab7h0hdra4fjy505pivg6dbgcdxa4vd30g8gjhk8x7i28z24mn0"))))
(build-system gnu-build-system)
(native-inputs (list pkg-config gfortran))
(inputs (list libxml2
--
2.39.1
guix-patches@HIDDEN:bug#61204; Package guix-patches.
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* gnu/packages/maths.scm (suitesparse-3): New variable.
---
gnu/packages/maths.scm | 95 ++++++++++++++++++++++++++++++++++++++++++
1 file changed, 95 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index f00f4f58be..cc138de940 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -5116,6 +5116,101 @@ (define-public suitesparse
;; GPUQREngine, RBio, SuiteSparse_GPURuntime, SuiteSparseQR, UMFPACK
(license (list license:gpl2+ license:lgpl2.1+))))
+
+;; This outdated version is used to build the scilab package.
+(define-public suitesparse-3
+ (package
+ (inherit suitesparse)
+ (name "suitesparse")
+ (version "3.1.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/DrTimothyAldenDavis/SuiteSparse")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0wxk755nzps0c9la24zqknqkzjp6rcj5q9jhd973mff1pqja3clz"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:tests? #f ;no "check" target
+ #:make-flags
+ ,#~(list
+ (string-append "CC=gcc")
+ "AR=gcc -shared -o"
+ "RANLIB=touch"
+ "CFLAGS=-O3 -fPIC -I../Include"
+ "TBB=-ltbb"
+ (string-append
+ "METIS=" (search-input-file %build-inputs "lib/libmetis.so"))
+ (string-append
+ "METIS_PATH="
+ (string-drop-right
+ (search-input-file %build-inputs "lib/libmetis.so")
+ (string-length "/lib/libmetis.so")))
+
+ ;; The default is to link against netlib lapack. Use OpenBLAS
+ ;; instead.
+ "BLAS=-lopenblas" "LAPACK=-lopenblas"
+
+ (string-append "INSTALL_LIB="
+ (assoc-ref %outputs "out") "/lib")
+ (string-append "INSTALL_INCLUDE="
+ (assoc-ref %outputs "out") "/include")
+ "library")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'correct-build-configuration
+ (lambda _
+ ;; Correct metis path.
+ (substitute* "CHOLMOD/Lib/Makefile"
+ (("\\$\\(METIS_PATH\\)\\/Lib")
+ "$(METIS_PATH)/include"))
+ ;; Invert build order: CHOLMOD before KLU.
+ (substitute* "Makefile"
+ (("\t\\( cd CHOLMOD ; \\$\\(MAKE\\) \\)\n$")
+ "")
+ (("\\( cd KLU ; \\$\\(MAKE\\) \\)")
+ (string-append "( cd CHOLMOD ; $(MAKE) )\n\t"
+ "( cd KLU ; $(MAKE) )")))
+ ;; Build shared libraries.
+ (substitute* (find-files "." "akefile$")
+ (("lib([a-z]+)\\.a" all libname)
+ (string-append "lib" libname ".so")))
+ ;; Delete broken KLU Demo step.
+ (substitute* "KLU/Makefile"
+ (("\\( cd Demo ; \\$\\(MAKE\\) \\)")
+ ""))))
+ (replace 'install
+ (lambda _
+ ;; Install libraries.
+ (for-each
+ (lambda (x)
+ (install-file
+ x
+ (string-append (assoc-ref %outputs "out") "/lib")))
+ (find-files "." "\\.so$"))
+ ;; Install header files.
+ (for-each
+ (lambda (x)
+ (install-file
+ x
+ (string-append (assoc-ref %outputs "out") "/include")))
+ (find-files "." "\\.h$"))))
+ ,@(if (target-riscv64?)
+ ;; GraphBLAS FTBFS on riscv64-linux
+ `((add-after 'unpack 'skip-graphblas
+ (lambda _
+ (substitute* "Makefile"
+ ((".*cd GraphBLAS.*") "")
+ (("metisinstall gbinstall moninstall")
+ "metisinstall moninstall")))))
+ '())
+ (delete 'configure)))) ;no configure script
+ (inputs
+ (list tbb openblas gmp mpfr metis-4))))
+
(define-public atlas
(package
(name "atlas")
--
2.39.1
guix-patches@HIDDEN:bug#61204; Package guix-patches.
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* gnu/packages/maths.scm (metis-4): New variable.
---
gnu/packages/maths.scm | 48 ++++++++++++++++++++++++++++++++++++++++++
1 file changed, 48 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 962b7d117c..f00f4f58be 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -4354,6 +4354,54 @@ (define-public metis
schemes.")
(license license:asl2.0))) ;As of version 5.0.3
+;; This outdated version contains only library and header files. It is used
+;; to build the scilab package.
+(define-public metis-4
+ (package
+ (inherit metis)
+ (name "metis")
+ (version "4.0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/"
+ "metis-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0m8shi202vprs8d9l51178v0skngzgx81q0d9ln1ng3hh3g3byjy"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list #:tests? #f ;no tests
+ #:make-flags
+ #~(list "CC=gcc"
+ "AR=gcc -shared -o"
+ "RANLIB=touch"
+ "OPTFLAGS= -O3 "
+ "COPTIONS= -fPIC"
+ (string-append
+ "LDOPTIONS=-Wl,rpath," #$output "/lib")
+ "METISLIB=../libmetis.so")
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'configure
+ ;; Make the library shared.
+ (lambda _
+ (substitute* "Lib/Makefile"
+ (("libmetis\\.a")
+ "libmetis.so"))
+ (chdir "Lib")))
+ (replace 'install
+ (lambda _
+ ;; Library
+ (chdir "..")
+ (install-file "libmetis.so"
+ (string-append #$output "/lib"))
+ ;; Includes
+ (for-each
+ (lambda (x)
+ (install-file x (string-append #$output "/include")))
+ (find-files "Lib" "\\.h$")))))))))
+
(define-public p4est
(package
(name "p4est")
--
2.39.1
guix-patches@HIDDEN:bug#61204; Package guix-patches.
Full text available.
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Subject: [PATCH 1/6] gnu: matio: Add header file.
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* gnu/packages/maths.scm (matio):
[arguments] (phases): Add phase install-matioConfig.h.
---
gnu/packages/maths.scm | 8 ++++++++
1 file changed, 8 insertions(+)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 4640237968..962b7d117c 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -5922,6 +5922,14 @@ (define-public matio
(base32
"0vr8c1mz1k6mz0sgh6n3scl5c3a71iqmy5fnydrgq504icj4vym4"))))
(build-system gnu-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'install 'install-matioConfig.h
+ (lambda _
+ (install-file "src/matioConfig.h"
+ (string-append #$output "/include")))))))
(inputs
(list zlib hdf5-1.8))
(home-page "http://matio.sourceforge.net/")
--
2.39.1
guix-patches@HIDDEN:bug#61204; Package guix-patches.
Full text available.Received: (at submit) by debbugs.gnu.org; 1 Feb 2023 01:07:27 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue Jan 31 20:07:26 2023 Received: from localhost ([127.0.0.1]:55356 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1pN1aw-0005lw-LO for submit <at> debbugs.gnu.org; Tue, 31 Jan 2023 20:07:26 -0500 Received: from lists.gnu.org ([209.51.188.17]:43218) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <ngraves@HIDDEN>) id 1pN1aq-0005ll-Qt for submit <at> debbugs.gnu.org; Tue, 31 Jan 2023 20:07:23 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ngraves@HIDDEN>) id 1pN1aq-0004RD-DC for guix-patches@HIDDEN; Tue, 31 Jan 2023 20:07:20 -0500 Received: from 11.mo583.mail-out.ovh.net ([46.105.47.167]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ngraves@HIDDEN>) id 1pN1ao-0008HM-7Z for guix-patches@HIDDEN; Tue, 31 Jan 2023 20:07:20 -0500 Received: from director4.ghost.mail-out.ovh.net (unknown [10.109.146.19]) by mo583.mail-out.ovh.net (Postfix) with ESMTP id B282D210E1 for <guix-patches@HIDDEN>; Wed, 1 Feb 2023 01:07:02 +0000 (UTC) Received: from ghost-submission-6684bf9d7b-qxwh7 (unknown [10.110.208.248]) by director4.ghost.mail-out.ovh.net (Postfix) with ESMTPS id 4BBA71FD58 for <guix-patches@HIDDEN>; Wed, 1 Feb 2023 01:07:01 +0000 (UTC) Received: from ngraves.fr ([37.59.142.96]) by ghost-submission-6684bf9d7b-qxwh7 with ESMTPSA id 1CfqFzW72WMFwBAAO6hIsA (envelope-from <ngraves@HIDDEN>) for <guix-patches@HIDDEN>; Wed, 01 Feb 2023 01:07:01 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-96R001c11df709-ce1e-48e1-89a9-b07d241ea45e, 33734DDD670EA2F5B45DA9EA9FF6728C9E7B66C2) smtp.auth=ngraves@HIDDEN X-OVh-ClientIp: 81.67.140.142 From: Nicolas Graves <ngraves@HIDDEN> To: guix-patches@HIDDEN Subject: Scilab scientific software Date: Wed, 01 Feb 2023 02:07:00 +0100 Message-ID: <87h6w6tcqz.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain X-Ovh-Tracer-Id: 13489969736982455034 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgedvhedrudefhedgfeduucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvffufffkgggtsehttdertddttddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepueejleeileejfffhleetjedtleejheevudffleevgfdufeekhefgvddvveegveefnecukfhppeduvdejrddtrddtrddupdefjedrheelrddugedvrdelieenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqpdhnsggprhgtphhtthhopedupdhrtghpthhtohepghhuihigqdhprghttghhvghssehgnhhurdhorhhgpdfovfetjfhoshhtpehmohehkeefpdhmohguvgepshhmthhpohhuth Received-SPF: pass client-ip=46.105.47.167; envelope-from=ngraves@HIDDEN; helo=11.mo583.mail-out.ovh.net X-Spam_score_int: -18 X-Spam_score: -1.9 X-Spam_bar: - X-Spam_report: (-1.9 / 5.0 requ) BAYES_00=-1.9, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H3=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -2.3 (--) Hi guix! I took a job where I have to use the scientific software suite Scilab in an old version (5.4.1). I'll probably update it during this job. I managed to package this version in the non-graphical version of Scilab 5.5.X versions this weekend. It needs some old software libraries (metis@4, suitesparse@3), which releases are not even in guix's history, and some compilation errors fixes. I go ahead and propose these patches in the next patches. I may continue to work to propose updates up to the latest versions, but they need some more work. -- Best regards, Nicolas Graves
Nicolas Graves <ngraves@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#61204; Package guix-patches.
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