GNU bug report logs -
#61250
[PATCH 1/3] gnu: Add r-viper.
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Report forwarded
to
guix-patches <at> gnu.org
:
bug#61250
; Package
guix-patches
.
(Fri, 03 Feb 2023 12:20:01 GMT)
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Acknowledgement sent
to
Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
.
(Fri, 03 Feb 2023 12:20:01 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-viper): New variable.
---
gnu/packages/bioconductor.scm | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 711b988e7f..aeef6f4106 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8307,6 +8307,27 @@ (define-public r-variantannotation
coding changes and predict coding outcomes.")
(license license:artistic2.0)))
+(define-public r-viper
+ (package
+ (name "r-viper")
+ (version "1.32.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "viper" version))
+ (sha256
+ (base32
+ "11i2q9nakh534nx2l736id7k1yqhk7jpg32sbfl4vrnh398q86h6"))))
+ (properties `((upstream-name . "viper")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase r-e1071 r-kernsmooth r-mixtools))
+ (home-page "https://bioconductor.org/packages/viper")
+ (synopsis
+ "Virtual inference of protein-activity by enriched regulon analysis")
+ (description
+ "Inference of protein activity from gene expression data.
+Including the VIPER and msVIPER algorithms")
+ (license license:gpl2+)))
+
(define-public r-vsn
(package
(name "r-vsn")
--
2.34.1
Reply sent
to
Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Fri, 03 Feb 2023 15:50:01 GMT)
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Notification sent
to
Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Fri, 03 Feb 2023 15:50:02 GMT)
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Message #10 received at 61250-done <at> debbugs.gnu.org (full text, mbox):
Unfortunately, we cannot add this to Guix. The license says:
c. You agree that You will only use the Program and Documentation for
non-commercial internal academic or educational research purposes
only. You will not (i) reproduce or copy the Program (ii) use, or
cause or permit the use of, the Program in whole or in part for any
purpose other than as permitted under this License; (iii)
distribute, sell, lease, license or otherwise make the Program
available to a third party outside Your organization; or (iv)
reverse engineer, decompile, or disassemble the Program.
I have instead added the package to guix-science-nonfree.
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Sat, 04 Mar 2023 12:24:13 GMT)
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This bug report was last modified 1 year and 46 days ago.
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