GNU bug report logs -
#61252
[PATCH 3/3] gnu: Add r-dorothea.
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Report forwarded
to
guix-patches <at> gnu.org
:
bug#61252
; Package
guix-patches
.
(Fri, 03 Feb 2023 12:20:02 GMT)
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Acknowledgement sent
to
Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
.
(Fri, 03 Feb 2023 12:20:02 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-dorothea): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 521d6c00be..0786160b5e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -466,6 +466,31 @@ (define-public r-bsgenome-mmusculus-ucsc-mm10
in Biostrings objects.")
(license license:artistic2.0)))
+(define-public r-dorothea
+ (package
+ (name "r-dorothea")
+ (version "1.10.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "dorothea" version
+ 'experiment))
+ (sha256
+ (base32
+ "05vkb5mash2m8p6njk842sy5pz7vblrm8n9bphqbslm86kld5n92"))))
+ (properties `((upstream-name . "dorothea")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-bcellviper r-dplyr r-magrittr r-viper))
+ (native-inputs (list r-knitr))
+ (home-page "https://saezlab.github.io/dorothea/")
+ (synopsis "Collection of human and mouse TF regulons")
+ (description
+ "DoRothEA is a gene regulatory network containing signed transcription factor.
+DoRothEA regulons, the collection of a TF andits transcriptional targets,
+were curated and collected from different types ofevidence for both human
+and mouse. A confidence level was assigned to each TF-target interaction
+based on the number of supporting evidence.")
+ (license license:gpl3)))
+
(define-public r-genomeinfodbdata
(package
(name "r-genomeinfodbdata")
--
2.34.1
Reply sent
to
Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Fri, 03 Feb 2023 15:51:01 GMT)
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Notification sent
to
Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Fri, 03 Feb 2023 15:51:02 GMT)
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Message #10 received at 61252-done <at> debbugs.gnu.org (full text, mbox):
Thanks for the patch!
Since this depends on r-viper, which is nonfree I cannot add this
package to Guix. I have instead pushed it to the channel
“guix-science-nonfree”.
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Sat, 04 Mar 2023 12:24:14 GMT)
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This bug report was last modified 1 year and 59 days ago.
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