GNU bug report logs -
#61254
[PATCH] gnu: Add r-psupertime.
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Report forwarded
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guix-patches <at> gnu.org
:
bug#61254
; Package
guix-patches
.
(Fri, 03 Feb 2023 13:45:01 GMT)
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Acknowledgement sent
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Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
.
(Fri, 03 Feb 2023 13:45:01 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioinformatics.scm (r-psupertime): New variable.
---
gnu/packages/bioinformatics.scm | 44 +++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b8676b0ece..703d71fb68 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8229,6 +8229,50 @@ (define-public r-doubletcollection
benchmark of those eight mentioned methods.")
(license license:gpl3+))))
+(define-public r-psupertime
+ (let ((commit "73825a28d3bd9bc881c15ee0c4c218eec1c9c207")
+ (revision "1"))
+ (package
+ (name "r-psupertime")
+ (version (git-version "0.2.6" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/wmacnair/psupertime")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "00h1r3ffz6m9dwcgkvyki8405b059qn6mnjsd8d76a1rabaf2vfh"))))
+ (properties `((upstream-name . "psupertime")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-cowplot
+ r-data-table
+ r-fastcluster
+ r-forcats
+ r-ggplot2
+ r-glmnet
+ r-knitr
+ r-matrix
+ r-rcolorbrewer
+ r-scales
+ r-scran
+ r-singlecellexperiment
+ r-stringr
+ r-summarizedexperiment
+ r-topgo))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/wmacnair/psupertime")
+ (synopsis
+ "Psupertime is supervised pseudotime for single cell RNAseq data")
+ (description
+ "Psupertime uses single cell RNAseq data, where the cells have a known ordering.
+This ordering helps to identify a small number of genes which place
+cells in that known order. It can be used for discovery of relevant
+genes, for identification of subpopulations, and characterization of
+further unknown or differently labelled data.")
+ (license license:gpl3))))
+
(define-public r-pando
(package
(name "r-pando")
--
2.34.1
Reply sent
to
Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Fri, 03 Feb 2023 15:59:02 GMT)
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Notification sent
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Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Fri, 03 Feb 2023 15:59:02 GMT)
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Message #10 received at 61254-done <at> debbugs.gnu.org (full text, mbox):
Thanks for the patch. Applied!
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Sat, 04 Mar 2023 12:24:14 GMT)
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This bug report was last modified 1 year and 25 days ago.
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