GNU bug report logs -
#61382
[PATCH 1/2] gnu: Add python-scrublet.
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Report forwarded
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guix-patches <at> gnu.org
:
bug#61382
; Package
guix-patches
.
(Thu, 09 Feb 2023 08:13:02 GMT)
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Acknowledgement sent
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Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
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(Thu, 09 Feb 2023 08:13:02 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioinformatics.scm (python-scrublet): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 969b978054..05a078b0b0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3459,6 +3459,32 @@ (define-public python-scikit-bio
resources for bioinformatics.")
(license license:bsd-3)))
+(define-public python-scrublet
+ (package
+ (name "python-scrublet")
+ (version "0.2.3")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "scrublet" version))
+ (sha256
+ (base32
+ "0fk5pwk12yz9wpvwkl6j2l2g28f3x35b9r9n5bw6f0i9f0qgd191"))))
+ (build-system python-build-system)
+ (propagated-inputs (list python-annoy
+ python-cython
+ python-matplotlib
+ python-numba
+ python-numpy
+ python-pandas
+ python-scikit-image
+ python-scikit-learn
+ python-scipy
+ python-umap-learn))
+ (home-page "https://github.com/swolock/scrublet")
+ (synopsis "single-cell tool to indentify and remove doublets")
+ (description "Tool for identifying and removing doublets in single-cell RNA-seq data.")
+ (license license:expat)))
+
(define-public cwltool
(package
(name "cwltool")
--
2.34.1
Reply sent
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Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Thu, 09 Feb 2023 08:40:02 GMT)
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Notification sent
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Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Thu, 09 Feb 2023 08:40:02 GMT)
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Message #10 received at 61382-done <at> debbugs.gnu.org (full text, mbox):
Applied with minor changes. Thank you!
--
Ricardo
bug archived.
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Debbugs Internal Request <help-debbugs <at> gnu.org>
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internal_control <at> debbugs.gnu.org
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(Thu, 09 Mar 2023 12:24:09 GMT)
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This bug report was last modified 1 year and 48 days ago.
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