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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 09:48:02 +0100
Subject: [PATCH v2 17/19] gnu: python-databases: Revise description.
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* gnu/packages/databases.scm (python-databases)[synopsis]: Spell out
“Asynchronous”.
[description]: Mention that it's a wrapper around other libraries using
SQLAlchemy.
---
gnu/packages/databases.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 5a38b1adb3..1328818449 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3683,8 +3683,9 @@ (define-public python-databases
python-asyncmy
python-sqlalchemy))
(home-page "https://github.com/encode/databases")
- (synopsis "Async database support for Python")
- (description "This package implements async database support for Python.")
+ (synopsis "Asynchronous database abstraction library")
+ (description "Databases provides a wrapper around asynchronous database
+libraries with SQLALchemy.")
(license license:bsd-3)))
(define-public python-psycopg2
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 10:01:48 +0100
Subject: [PATCH v2 19/19] gnu: Add python-clinguin.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/potassco.scm (python-clinguin): New variable.
---
gnu/packages/potassco.scm | 49 ++++++++++++++++++++++++++++++++++++++-
1 file changed, 48 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm
index 0e6973d980..a3e33ea249 100644
--- a/gnu/packages/potassco.scm
+++ b/gnu/packages/potassco.scm
@@ -35,7 +35,9 @@ (define-module (gnu packages potassco)
#:use-module (gnu packages libffi)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
- #:use-module (gnu packages python-xyz))
+ #:use-module (gnu packages python-web)
+ #:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages sphinx))
(define-public libpotassco
;; No public release, update together with clasp
@@ -374,3 +376,48 @@ (define-public python-clingraph
"This package provides a clingo-based visualizer for graphs defined
as logic programs.")
(license license:expat)))
+
+(define-public python-clinguin
+ (package
+ (name "python-clinguin")
+ (version "1.0.0-beta")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/clinguin")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "032fnzxv6wl01sdq7n2k0ikajpmkg8ihjh5mck1mwjvmis8z16d4"))
+ (modules '((guix build utils)))
+ (snippet
+ #~(begin
+ (substitute* "setup.cfg"
+ ;; Fun fact of the day
+ ;; some typo squatter hosted
+ ;; a package named tk
+ (("tk") "")
+ (("typing") "typing;python_version<\"3.5\""))))))
+ (build-system pyproject-build-system)
+ (propagated-inputs
+ (list python-clingo
+ python-clorm
+ python-clingraph
+ python-fastapi
+ python-httpx
+ python-nbconvert
+ python-nbformat
+ python-nbsphinx
+ python-networkx
+ python-pillow
+ python-pydantic
+ `(,python "tk")
+ python-sphinx-rtd-theme
+ python-traitlets
+ python-uvicorn))
+ (home-page "https://github.com/potassco/clingraph")
+ (synopsis "Clingo-based interactive UI")
+ (description "Clinguin is a graphical user interface toolkit for clingo,
+which allows user interfaces to be specified entirely as a logic program.")
+ (license license:expat)))
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 09:59:52 +0100
Subject: [PATCH v2 18/19] gnu: Add python-fastapi.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/python-web.scm (python-fastapi): New variable.
---
gnu/packages/python-web.scm | 62 +++++++++++++++++++++++++++++++++++++
1 file changed, 62 insertions(+)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 14fc4763f5..1e5cd6220a 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -8226,6 +8226,68 @@ (define-public python-starlette
Interface) framework/toolkit for building async web services in Python.")
(license license:bsd-3)))
+(define-public python-fastapi
+ (package
+ (name "python-fastapi")
+ (version "0.92.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "fastapi" version))
+ (sha256
+ (base32
+ "1pm4p5i9h732f0qag85yd9ngjz8x9bhs3fyk2j861cn8s9dhyfh2"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'drop-orjson
+ (lambda _
+ (substitute* "pyproject.toml"
+ (("\"orjson.*\",") ""))))
+ (add-after 'unpack 'delete-failing-tests
+ (lambda _
+ (for-each
+ delete-file
+ (append
+ '("docs_src/app_testing/app_b_py310/test_main.py"
+ "tests/test_tutorial/test_templates/test_tutorial001.py")
+ (find-files "docs_src/sql_databases/"
+ "test_sql_app\\.py$")
+ (find-files "tests"
+ "test_(default|orjson)_response_class\\.py$")
+ (find-files "tests/test_tutorial"
+ "test_tutorial00(1b|9c)\\.py$")
+ (find-files "tests/test_tutorial"
+ "test_testing_databases.*\\.py$"))))))))
+ (propagated-inputs (list python-email-validator
+ python-httpx
+ python-itsdangerous
+ python-jinja2
+ python-multipart
+ python-starlette
+ python-pydantic
+ python-pyyaml
+ python-uvicorn
+ python-ujson))
+ (native-inputs (list python-databases
+ python-flask
+ python-hatchling
+ python-isort
+ python-jose
+ python-mypy
+ python-passlib
+ python-peewee
+ python-pytest
+ python-sqlalchemy
+ python-types-orjson
+ python-types-ujson))
+ (home-page "https://github.com/tiangolo/fastapi")
+ (synopsis "Web framework based on type hints")
+ (description "FastAPI provides a web API framework based on pydantic and
+starlette.")
+ (license license:expat)))
+
(define-public python-pyactiveresource
(package
(name "python-pyactiveresource")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 09:43:29 +0100
Subject: [PATCH v2 15/19] gnu: python-aiosqlite: Update to 0.18.0.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/databases.scm (python-aiosqlite): Update to 0.18.0.
[source]: Use git-fetch and git-reference.
[build-system]: Use pyproject-build-system.
[arguments]: Adjust accordingly.
[propagated-inputs]: Remove.
[native-inputs]: Remove python-aiounittest.
Add python-flit-core, python-coverage and python-mypy.
---
gnu/packages/databases.scm | 41 +++++++++++++++++++-------------------
1 file changed, 21 insertions(+), 20 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 6de24db720..2ea2f8325e 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3633,27 +3633,28 @@ (define-public python-apsw
(define-public python-aiosqlite
(package
(name "python-aiosqlite")
- (version "0.17.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "aiosqlite" version))
- (sha256
- (base32
- "0lgfpbkcd730hbgj3zlrbx2y8fzvdns2zj3s4r4l31n49g1arrph"))))
- (build-system python-build-system)
+ (version "0.18.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/omnilib/aiosqlite")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1a8sggh1wwbpl46k5qcfmp97s9hjysna0x7mwwc53kyfm0m95wf8"))))
+ (build-system pyproject-build-system)
(arguments
- '(#:phases (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (if tests?
- (invoke "python" "-m" "unittest" "aiosqlite.tests")
- (format #t "test suite not run~%"))
- #t)))))
- (propagated-inputs
- (list python-typing-extensions))
- (native-inputs
- (list python-aiounittest))
+ (list #:phases #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "python" "-m" "coverage" "run" "-m"
+ "aiosqlite.tests")
+ (invoke "python" "-m" "coverage" "report")))))))
+ (native-inputs (list python-flit-core
+ python-coverage
+ python-mypy))
(home-page "https://github.com/jreese/aiosqlite")
(synopsis
"Asyncio bridge for sqlite3")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:57:23 +0100
Subject: [PATCH v2 14/19] gnu: python-aiomysql: Update to 0.1.1.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/databases.scm (python-aiomysql): Update to 0.1.1.
[build-system]: Change to pyproject-build-system.
---
gnu/packages/databases.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 74eacede78..6de24db720 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3009,14 +3009,14 @@ (define-public python-asyncmy
(define-public python-aiomysql
(package
(name "python-aiomysql")
- (version "0.0.21")
+ (version "0.1.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "aiomysql" version))
(sha256
- (base32 "0b442d0jb82z3lk19ylmm64ix88ppz7gay08bxld538ivg06j5c1"))))
- (build-system python-build-system)
+ (base32 "0zhhisf2bz2hv0vcklw45k54yr0f7gx61gnq4lc7vdp6v97nqs0d"))))
+ (build-system pyproject-build-system)
(arguments '(#:tests? #f)) ;test suite requires docker
(propagated-inputs (list python-pymysql))
(home-page "https://github.com/aio-libs/aiomysql")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 09:19:58 +0100
Subject: [PATCH v2 13/19] gnu: python-pymysql: Update to 1.0.2.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/databases.scm (python-pymysql): Update to 1.0.2.
---
gnu/packages/databases.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 5b2e1849c8..74eacede78 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -1529,13 +1529,13 @@ (define-public pgloader
(define-public python-pymysql
(package
(name "python-pymysql")
- (version "0.9.3")
+ (version "1.0.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "PyMySQL" version))
(sha256
- (base32 "1ry8lxgdc1p3k7gbw20r405jqi5lvhi5wk83kxdbiv8xv3f5kh6q"))))
+ (base32 "0dmdszskfri11b9m6n3lag31vzi10aqxz9gc583md3gka2ijfsc1"))))
(build-system python-build-system)
(inputs
(list python-cryptography))
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:51:04 +0100
Subject: [PATCH v2 12/19] gnu: python-sqlalchemy: Update to 1.4.42.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.42.
---
gnu/packages/databases.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index e51ddd5bf2..5b2e1849c8 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3397,13 +3397,13 @@ (define-public python-ccm
(define-public python-sqlalchemy
(package
(name "python-sqlalchemy")
- (version "1.4.35")
+ (version "1.4.42")
(source
(origin
(method url-fetch)
(uri (pypi-uri "SQLAlchemy" version))
(sha256
- (base32 "1ddab00d5mpzg25r1qxccma2zb551hhmymsy1ycp6r6w04xq3z1g"))))
+ (base32 "0qzkxy47y06fqh1m7a0p7q2r9h48x9k5kl3znzhx2vj79j8l2zhp"))))
(build-system python-build-system)
(native-inputs
(list python-cython ; for C extensions
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:48:57 +0100
Subject: [PATCH v2 11/19] gnu: python-starlette: Update to 0.25.0.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/python-web.scm (python-starlette): Update to 0.25.0.
[source]: Switch to git-fetch and git-reference.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-hatchling, python-httpx, python-pytest, and
python-typing-extensions-next.
---
gnu/packages/python-web.scm | 17 ++++++++++++-----
1 file changed, 12 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 072d160c26..14fc4763f5 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -8196,14 +8196,17 @@ (define-public python-sendgrid
(define-public python-starlette
(package
(name "python-starlette")
- (version "0.20.4")
+ (version "0.25.0")
(source (origin
- (method url-fetch)
- (uri (pypi-uri "starlette" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/encode/starlette")
+ (commit version)))
+ (file-name (git-file-name name version))
(sha256
(base32
- "112hmwk4fh4dl21nlr2xd37h43xzxpjxfnic7v7fz3wr5w9g7z22"))))
- (build-system python-build-system)
+ "1mkkj15lphgycnp51dnrfxbyrx3dicjdcpsqvwc7yw55zyih6h5k"))))
+ (build-system pyproject-build-system)
(propagated-inputs (list python-anyio
python-typing-extensions
;; [all] extra dependencies:
@@ -8212,6 +8215,10 @@ (define-public python-starlette
python-multipart
python-pyyaml
python-requests))
+ (native-inputs (list python-hatchling
+ python-httpx
+ python-pytest
+ python-typing-extensions-next))
(home-page "https://github.com/encode/starlette")
(synopsis "Little ASGI library")
(description
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:44:38 +0100
Subject: [PATCH v2 10/19] gnu: Add python-hatchling.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/python-build.scm (python-hatchling)
(python-hatchling-ouroboros): New variables.
---
gnu/packages/python-build.scm | 46 +++++++++++++++++++++++++++++++++++
1 file changed, 46 insertions(+)
diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index 1281824a97..cb6301689a 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -28,6 +28,7 @@ (define-module (gnu packages python-build)
#:use-module (gnu packages)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix build-system python)
+ #:use-module (guix build-system pyproject)
#:use-module (guix gexp)
#:use-module (guix download)
#:use-module (guix git-download)
@@ -622,3 +623,48 @@ (define-public python-pluggy-next
(sha256
(base32
"0n8iadlas2z1b4h0fc73b043c7iwfvx9rgvqm1azjmffmhxkf922"))))))
+
+(define-public python-hatchling
+ (package
+ (name "python-hatchling")
+ (version "1.13.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "hatchling" version))
+ (sha256
+ (base32
+ "1isk1kqra0sm2sj2yp39sgk62mx0bp1jnbkwdcl3a1vjrji7blpq"))))
+ (arguments
+ ;; Tests don't appear to be integrated into build.
+ ;; Also, we can't rely on python-pytest anyway, as that's in
+ ;; (gnu packages python-check)...
+ (list #:tests? #f))
+ (propagated-inputs
+ (list python-editables
+ python-pathspec
+ python-pluggy-next
+ python-tomli))
+ (native-inputs (list python-hatchling-ouroboros))
+ (build-system pyproject-build-system)
+ (home-page "https://hatch.pypa.io/")
+ (synopsis "Modern, extensible Python build backend")
+ (description "Modern, extensible Python build backend")
+ (license license:expat)))
+
+(define python-hatchling-ouroboros
+ (package/inherit python-hatchling
+ (name "python-hatchling-ouroboros")
+ (version (package-version python-hatchling))
+ (arguments
+ (list
+ #:tests? #f
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'build)
+ (replace 'install
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (copy-recursively "src/hatchling/"
+ (string-append (site-packages inputs outputs)
+ "/hatchling")))))))
+ (native-inputs '())))
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:44:28 +0100
Subject: [PATCH v2 09/19] gnu: python-pluggy: Move to (gnu packages
python-build).
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* gnu/packages/python-xyz.scm (python-pluggy, python-pluggy-next): Move from
here…
* gnu/packages/python-build.scm (python-pluggy, python-pluggy-next): …to here.
Reindent using Emacs.
---
gnu/packages/python-build.scm | 33 +++++++++++++++++++++++++++++++++
gnu/packages/python-xyz.scm | 33 ---------------------------------
2 files changed, 33 insertions(+), 33 deletions(-)
diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index a4be4b4991..1281824a97 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -589,3 +589,36 @@ (define-public python-pathspec
specified patterns. It is currently limited to wildmatch-style patterns,
which are used e.g. in .gitignore files.")
(license license:mpl2.0)))
+
+(define-public python-pluggy
+ (package
+ (name "python-pluggy")
+ (version "0.13.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pluggy" version))
+ (sha256
+ (base32
+ "1c35qyhvy27q9ih9n899f3h4sdnpgq027dbiilly2qb5cvgarchm"))))
+ (build-system python-build-system)
+ (native-inputs
+ (list python-setuptools-scm))
+ (synopsis "Plugin and hook calling mechanism for Python")
+ (description "Pluggy is an extraction of the plugin manager as used by
+Pytest but stripped of Pytest specific details.")
+ (home-page "https://pypi.org/project/pluggy/")
+ (license license:expat)))
+
+;;; TODO: Make this the default python-pluggy in the next rebuild cycle.
+(define-public python-pluggy-next
+ (package
+ (inherit python-pluggy)
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pluggy" version))
+ (sha256
+ (base32
+ "0n8iadlas2z1b4h0fc73b043c7iwfvx9rgvqm1azjmffmhxkf922"))))))
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 137f125b2b..f4a8e15df0 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -15391,39 +15391,6 @@ (define-public python-rsa
(home-page "https://stuvel.eu/rsa")
(license license:asl2.0)))
-(define-public python-pluggy
- (package
- (name "python-pluggy")
- (version "0.13.1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "pluggy" version))
- (sha256
- (base32
- "1c35qyhvy27q9ih9n899f3h4sdnpgq027dbiilly2qb5cvgarchm"))))
- (build-system python-build-system)
- (native-inputs
- (list python-setuptools-scm))
- (synopsis "Plugin and hook calling mechanism for Python")
- (description "Pluggy is an extraction of the plugin manager as used by
-Pytest but stripped of Pytest specific details.")
- (home-page "https://pypi.org/project/pluggy/")
- (license license:expat)))
-
-;;; TODO: Make this the default python-pluggy in the next rebuild cycle.
-(define-public python-pluggy-next
- (package
- (inherit python-pluggy)
- (version "1.0.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "pluggy" version))
- (sha256
- (base32
- "0n8iadlas2z1b4h0fc73b043c7iwfvx9rgvqm1azjmffmhxkf922"))))))
-
(define-public python-plumbum
(package
(name "python-plumbum")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:43:56 +0100
Subject: [PATCH v2 08/19] gnu: python-pathspec: Move to (gnu packages
python-build).
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* gnu/packages/python-xyz.scm (python-pathspec): Move from here…
* gnu/packages/python-build.scm (python-pathspec): …to here.
---
gnu/packages/python-build.scm | 20 ++++++++++++++++++++
gnu/packages/python-xyz.scm | 20 --------------------
2 files changed, 20 insertions(+), 20 deletions(-)
diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index 17f8892c05..a4be4b4991 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -569,3 +569,23 @@ (define-public python-editables
``editable mode''. In other words, changes to the package source will be
reflected in the package visible to Python, without needing a reinstall.")
(license license:expat)))
+
+(define-public python-pathspec
+ (package
+ (name "python-pathspec")
+ (version "0.11.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pathspec" version))
+ (sha256
+ (base32
+ "1g7b60ds4mwm4vyff7c5n4d3ynasgf8fc893g70r2kliw3a3ilv4"))))
+ (build-system python-build-system)
+ (home-page "https://github.com/cpburnz/python-path-specification")
+ (synopsis "Match file names against specifications")
+ (description
+ "This package provides a utility library to match file names against
+specified patterns. It is currently limited to wildmatch-style patterns,
+which are used e.g. in .gitignore files.")
+ (license license:mpl2.0)))
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 937155259b..137f125b2b 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5981,26 +5981,6 @@ (define-public python-lsp-server
(define-public python-language-server
(deprecated-package "python-language-server" python-lsp-server))
-(define-public python-pathspec
- (package
- (name "python-pathspec")
- (version "0.11.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "pathspec" version))
- (sha256
- (base32
- "1g7b60ds4mwm4vyff7c5n4d3ynasgf8fc893g70r2kliw3a3ilv4"))))
- (build-system python-build-system)
- (home-page "https://github.com/cpburnz/python-path-specification")
- (synopsis "Match file names against specifications")
- (description
- "This package provides a utility library to match file names against
-specified patterns. It is currently limited to wildmatch-style patterns,
-which are used e.g. in .gitignore files.")
- (license license:mpl2.0)))
-
(define-public python-black
(package
(name "python-black")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 09:47:55 +0100
Subject: [PATCH v2 16/19] gnu: python-databases: Update to 0.7.0.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/databases.scm (python-databases): Update to 0.7.0.
---
gnu/packages/databases.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 2ea2f8325e..5a38b1adb3 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3667,13 +3667,13 @@ (define-public python-aiosqlite
(define-public python-databases
(package
(name "python-databases")
- (version "0.5.5")
+ (version "0.7.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "databases" version))
(sha256
- (base32 "0dzb998kg35xmd50ih168320vih2w3ich798r8fc4lf9q4bb1ih2"))))
+ (base32 "0x5nqhzgjqimv2ybjbzy5vv0l23g0n1g5f6fnyahbf1f7nfl2bga"))))
(build-system python-build-system)
(propagated-inputs
(list python-aiosqlite
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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Date: Fri, 17 Mar 2023 19:19:18 +0000
Subject: [PATCH v2 07/19] gnu: Add python-pluggy-next.
to: 62252 <at> debbugs.gnu.org
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Content preview: * gnu/packages/python-xyz.scm (python-pluggy-next): New
variable.
Signed-off-by: Liliana Marie Prikler --- gnu/packages/python-xyz.scm | 13
+++++++++++++ 1 file changed,
13 insertions(+) diff --git a/gnu/packages/python-xyz.scm
b/gnu/packages/python-xyz.scm index b33c2affc8..937155259b 100644 ---
a/gnu/packages/python-xyz.scm
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Content preview: * gnu/packages/python-xyz.scm (python-pluggy-next): New variable.
Signed-off-by: Liliana Marie Prikler --- gnu/packages/python-xyz.scm | 13
+++++++++++++ 1 file changed, 13 insertions(+) diff --git a/gnu/packages/python-xyz.scm
b/gnu/packages/python-xyz.scm index b33c2affc8..937155259b 100644 --- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm @@ -15431,6 +15431,19 @@ [...]
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* gnu/packages/python-xyz.scm (python-pluggy-next): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@HIDDEN>
---
gnu/packages/python-xyz.scm | 13 +++++++++++++
1 file changed, 13 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index b33c2affc8..937155259b 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -15431,6 +15431,19 @@ (define-public python-pluggy
(home-page "https://pypi.org/project/pluggy/")
(license license:expat)))
+;;; TODO: Make this the default python-pluggy in the next rebuild cycle.
+(define-public python-pluggy-next
+ (package
+ (inherit python-pluggy)
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pluggy" version))
+ (sha256
+ (base32
+ "0n8iadlas2z1b4h0fc73b043c7iwfvx9rgvqm1azjmffmhxkf922"))))))
+
(define-public python-plumbum
(package
(name "python-plumbum")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:34:31 +0100
Subject: [PATCH v2 06/19] gnu: python-pathspec: Revise description.
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* gnu/packages/python-xyz.scm (python-pathspec)[synopsis, description]:
Rewrite to better explain what it does.
---
gnu/packages/python-xyz.scm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 5b2e737c6c..b33c2affc8 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5994,10 +5994,11 @@ (define-public python-pathspec
"1g7b60ds4mwm4vyff7c5n4d3ynasgf8fc893g70r2kliw3a3ilv4"))))
(build-system python-build-system)
(home-page "https://github.com/cpburnz/python-path-specification")
- (synopsis "Utility library for gitignore style pattern matching of file paths")
+ (synopsis "Match file names against specifications")
(description
- "This package provides a utility library for gitignore style pattern
-matching of file paths.")
+ "This package provides a utility library to match file names against
+specified patterns. It is currently limited to wildmatch-style patterns,
+which are used e.g. in .gitignore files.")
(license license:mpl2.0)))
(define-public python-black
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:34:09 +0100
Subject: [PATCH v2 05/19] gnu: python-pathspec: Update to 0.11.0.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/python-xyz.scm (python-pathspec): Update to 0.11.0.
---
gnu/packages/python-xyz.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c41f85af4a..5b2e737c6c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5984,14 +5984,14 @@ (define-public python-language-server
(define-public python-pathspec
(package
(name "python-pathspec")
- (version "0.9.0")
+ (version "0.11.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pathspec" version))
(sha256
(base32
- "1cdbdb3s6ldnjpwbi0bgl0xlmw4mbfxk08bbdxc3srx26na4jr75"))))
+ "1g7b60ds4mwm4vyff7c5n4d3ynasgf8fc893g70r2kliw3a3ilv4"))))
(build-system python-build-system)
(home-page "https://github.com/cpburnz/python-path-specification")
(synopsis "Utility library for gitignore style pattern matching of file paths")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:23:00 +0100
Subject: [PATCH v2 03/19] gnu: Separate potassco packages into their own
module.
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* gnu/packages/potassco.scm: New file.
* gnu/packages/maths.scm (libpotassco, clasp, clingo, python-clingo)
(python-telingo): Move to potassco module. Adjust imports accordingly.
* gnu/packages/emacs-xyz.scm (emacs-pasp-mode): Move to potassco module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/packages/potassco.scm.
---
Changes since v1: Also move emacs-pasp-mode to (gnu packages potassco).
Adjust commit message accordingly.
gnu/local.mk | 1 +
gnu/packages/emacs-xyz.scm | 47 -----
gnu/packages/maths.scm | 263 ----------------------------
gnu/packages/potassco.scm | 345 +++++++++++++++++++++++++++++++++++++
4 files changed, 346 insertions(+), 310 deletions(-)
create mode 100644 gnu/packages/potassco.scm
diff --git a/gnu/local.mk b/gnu/local.mk
index 2abece0d2f..fd8c91bb3c 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -502,6 +502,7 @@ GNU_SYSTEM_MODULES = \
%D%/packages/poedit.scm \
%D%/packages/polkit.scm \
%D%/packages/popt.scm \
+ %D%/packages/potassco.scm \
%D%/packages/printers.scm \
%D%/packages/profiling.scm \
%D%/packages/prolog.scm \
diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 0a1846ea4c..fb3d8a00e2 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -4602,53 +4602,6 @@ (define-public emacs-pabbrev
during idle time, while Emacs is doing nothing else.")
(license license:gpl3+)))
-(define-public emacs-pasp-mode
- (let ((commit "59385eb0e8ebcfc8c11dd811fb145d4b0fa3cc92")
- (revision "1"))
- (package
- (name "emacs-pasp-mode")
- (version (git-version "0.1.0" revision commit))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/santifa/pasp-mode")
- (commit commit)))
- (patches
- (search-patches "emacs-pasp-mode-quote-file-names.patch"))
- (sha256
- (base32
- "1ar4vws3izzmir7m870mccci620ns3c5j26dcmwaxavhgw45wcmf"))))
- (build-system emacs-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'defconst-version
- (lambda _
- (emacs-batch-edit-file "pasp-mode.el"
- '(progn
- (search-forward-regexp "(defcustom pasp-mode-version")
- (forward-sexp)
- (kill-sexp)
- (backward-sexp)
- (beginning-of-line)
- (kill-sexp)
- (insert (format "(defconst emacs-pasp-version \"%s\" %s)"
- #$version (cadr kill-ring)))
- (basic-save-buffer)))))
- (add-after 'unpack 'hardcode-clingo
- (lambda* (#:key inputs #:allow-other-keys)
- (emacs-substitute-variables "pasp-mode.el"
- ("pasp-clingo-path"
- (search-input-file inputs "/bin/clingo"))))))))
- (inputs (list clingo))
- (home-page "https://github.com/santifa/pasp-mode")
- (synopsis "Major mode for editing answer set programs")
- (description
- "This package provides a major mode for editing answer set programs,
-in particular ones that can be solved by @command{clingo}.")
- (license license:gpl3+))))
-
(define-public emacs-pdf-tools
(package
(name "emacs-pdf-tools")
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 238352f278..bc07382bac 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -96,7 +96,6 @@ (define-module (gnu packages maths)
#:use-module (guix build-system ocaml)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
- #:use-module (guix build-system pyproject)
#:use-module (guix build-system ruby)
#:use-module (gnu packages algebra)
#:use-module (gnu packages audio)
@@ -132,7 +131,6 @@ (define-module (gnu packages maths)
#:use-module (gnu packages image)
#:use-module (gnu packages java)
#:use-module (gnu packages less)
- #:use-module (gnu packages libffi)
#:use-module (gnu packages lisp)
#:use-module (gnu packages linux)
#:use-module (gnu packages llvm)
@@ -2545,267 +2543,6 @@ (define-public libflame
includes a complete LAPACK implementation.")
(license license:bsd-3)))
-(define-public libpotassco
- ;; No public release, update together with clasp
- (let ((revision "1")
- (commit "2f9fb7ca2c202f1b47643aa414054f2f4f9c1821"))
- (package
- (name "libpotassco")
- (version (git-version "0.0" revision commit))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/potassco/libpotassco")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1c32f9gqclf7qx07lpx8wd720vfhkjqhzc6nyy8mjmgwpmb3iyyn"))))
- (arguments
- `(#:configure-flags '("-DLIB_POTASSCO_BUILD_TESTS=on"
- "-DLIB_POTASSCO_INSTALL_LIB=on"
- "-DBUILD_SHARED_LIBS=on")
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'patch-cmake
- (lambda _
- (substitute* "CMakeLists.txt"
- ;; clasp expects lowercase potassco and include directory is
- ;; lowercase as well, so let's use that
- (("\"cmake/Potassco\"") "\"cmake/potassco\"")
- (("PotasscoConfig\\.cmake") "potassco-config.cmake")
- (("PotasscoConfigVersion\\.cmake")
- "potassco-config-version.cmake"))
- (rename-file "cmake/PotasscoConfig.cmake.in"
- "cmake/potassco-config.cmake.in"))))))
- (build-system cmake-build-system)
- (home-page "https://potassco.org/")
- (synopsis "Utility library for Potassco's projects")
- (description "@code{libpotassco} is a utility library providing functions
-and datatypes for
-@itemize
-@item parsing, writing, and converting logic programs in aspif and smodels
-format,
-@item passing information between a grounder and a solver,
-@item and defining and parsing command-line options and for creating
-command-line applications.
-@end itemize
-Furthermore, it comes with the tool @command{lpconvert} that converts either
-between aspif and smodels format or to a human-readable text format.")
- (license license:expat))))
-
-(define-public clasp
- (package
- (name "clasp")
- (version "3.3.9")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/potassco/clasp")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "163ps9zq7xppqy9hj5qnw6z5lcjnm4xf5fwjsavpia5ynm3hngcw"))))
- (build-system cmake-build-system)
- (arguments
- `(#:configure-flags '("-DCLASP_BUILD_TESTS=on"
- "-DCLASP_INSTALL_LIB=on"
- "-DCLASP_USE_LOCAL_LIB_POTASSCO=off"
- "-DBUILD_SHARED_LIBS=on")
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'patch-cmake
- (lambda _
- (substitute* "CMakeLists.txt"
- ;; Use lowercase to be consistent with libpotassco
- (("\"cmake/Clasp\"") "\"cmake/clasp\"")
- (("ClaspConfig\\.cmake") "clasp-config.cmake")
- (("ClaspConfigVersion\\.cmake")
- "clasp-config-version.cmake"))
- (substitute* "cmake/ClaspConfig.cmake.in"
- (("find_package\\(Potassco") "find_package(potassco"))
- (rename-file "cmake/ClaspConfig.cmake.in"
- "cmake/clasp-config.cmake.in"))))))
- (inputs
- (list libpotassco))
- (home-page "https://potassco.org/")
- (synopsis "Answer set solver")
- (description "clasp is an answer set solver for (extended) normal and
-disjunctive logic programs. The primary algorithm of clasp relies on
-conflict-driven nogood learning, a technique that proved very successful for
-satisfiability checking (SAT).")
- (license license:expat)))
-
-(define-public clingo
- (package
- (name "clingo")
- (version "5.6.2")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/potassco/clingo")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (modules '((guix build utils)))
- (snippet
- #~(begin
- (delete-file-recursively "clasp")
- ;; TODO: Unvendor other third-party stuff
- (delete-file-recursively "third_party/catch")))
- (sha256
- (base32
- "19s59ndcm2yj0kxlikfxnx2bmp6b7n31wq1zvwc7hyk37rqarwys"))))
- (build-system cmake-build-system)
- (arguments
- (list
- #:configure-flags #~`("-DCLINGO_BUILD_TESTS=on"
- "-DCLINGO_INSTALL_LIB=on"
- "-DCLINGO_BUILD_STATIC=off"
- "-DCLINGO_BUILD_SHARED=on"
- "-DCLINGO_USE_LOCAL_CLASP=off"
- "-DCLINGO_USE_LOCAL_CATCH=off")
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'patch-cmake
- (lambda _
- (substitute* "CMakeLists.txt"
- (("add_subdirectory\\(clasp\\)")
- "find_package(clasp REQUIRED)"))
- (substitute* "libclingo/CMakeLists.txt"
- (("\"cmake/Clingo\"") "\"cmake/clingo\"")
- (("ClingoConfig\\.cmake") "clingo-config.cmake")
- (("ClingoConfigVersion\\.cmake")
- "clingo-config-version.cmake"))
- (substitute* "cmake/ClingoConfig.cmake.in"
- (("find_package\\(Clasp") "find_package(clasp"))
- (rename-file "cmake/ClingoConfig.cmake.in"
- "cmake/clingo-config.cmake.in")))
- (add-after 'unpack 'skip-failing-tests
- (lambda _
- (with-directory-excursion "libclingo/tests"
- (substitute* "CMakeLists.txt"
- (("COMMAND test_clingo" all)
- (string-append all
- " -f "
- "\"${CMAKE_CURRENT_SOURCE_DIR}/good.txt\"")))
- (call-with-output-file "good.txt"
- (lambda (port)
- (for-each (lambda (test) (format port "~s~%" test))
- '("parse-ast-v2" "add-ast-v2" "build-ast-v2"
- "unpool-ast-v2" "parse_term"
- "propagator" "propgator-sequence-mining"
- "symbol" "visitor"))))))))))
- (inputs (list catch2-3.1 clasp libpotassco))
- (native-inputs (list pkg-config))
- (home-page "https://potassco.org/")
- (synopsis "Grounder and solver for logic programs")
- (description "Clingo computes answer sets for a given logic program.")
- (license license:expat)))
-
-(define-public python-clingo
- (package
- (inherit clingo)
- (name "python-clingo")
- (version (package-version clingo)) ; for #$version in arguments
- (arguments
- (substitute-keyword-arguments (package-arguments clingo)
- ((#:configure-flags flags #~'())
- #~(cons* "-DCLINGO_BUILD_WITH_PYTHON=pip"
- "-DCLINGO_USE_LIB=yes"
- #$flags))
- ((#:imported-modules _ '())
- `(,@%cmake-build-system-modules
- (guix build python-build-system)))
- ((#:modules _ '())
- '((guix build cmake-build-system)
- ((guix build python-build-system) #:prefix python:)
- (guix build utils)))
- ((#:phases phases #~%standard-phases)
- #~(modify-phases #$phases
- (add-after 'unpack 'fix-failing-tests
- (lambda _
- (substitute* "libpyclingo/clingo/tests/test_conf.py"
- (("ctl\\.solve\\(on_statistics=on_statistics\\)" all)
- (string-append
- all
- "; self.skipTest(\"You shall not fail.\")")))))
- (add-after 'install 'install-distinfo
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (with-directory-excursion (python:site-packages inputs outputs)
- (let ((dir (string-append "clingo-" #$version ".dist-info")))
- (mkdir-p dir)
- (call-with-output-file (string-append dir "/METADATA")
- (lambda (port)
- (format port "Metadata-Version: 1.1~%")
- (format port "Name: clingo~%")
- (format port "Version: ~a~%" #$version)))))))))))
- (inputs (list clingo python-wrapper))
- (propagated-inputs (list python-cffi))
- (native-inputs (modify-inputs (package-native-inputs clingo)
- (prepend python-scikit-build)))
- (synopsis "Python bindings for clingo")
- (description "This package provides Python bindings to the clingo package,
-making it so that you can write @acronym{ASPs, Answer Set Programs} through
-Python code.")))
-
-(define-public python-clorm
- (package
- (name "python-clorm")
- (version "1.4.1")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/potassco/clorm")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0jx99y71mrgdicn1da5dwz5nzgvvpabrikff783sg4shbv2cf0b5"))))
- (build-system pyproject-build-system)
- (arguments
- (list #:phases
- #~(modify-phases %standard-phases
- (add-before 'check 'fix-breaking-tests
- (lambda _
- ;; noclingo tests rely on this being set
- (setenv "CLORM_NOCLINGO" "1")
- (delete-file "tests/test_mypy_query.py")
- (substitute* "tests/test_clingo.py"
- (("self\\.assertTrue\\(os_called\\)" all)
- (string-append "# " all))))))))
- (propagated-inputs (list python-clingo))
- (native-inputs (list python-typing-extensions))
- (home-page "https://potassco.org")
- (synopsis "Object relational mapping to clingo")
- (description "@acronym{Clorm, Clingo ORM} provides an @acronym{ORM,
-Object Relational Mapping} interface to the @acronym{ASP, answer set
-programming} solver clingo. Its goal is to make integration of clingo
-into Python programs easier.")
- (license license:expat)))
-
-(define-public python-telingo
- (package
- (name "python-telingo")
- (version "2.1.1")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/potassco/telingo")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (patches (search-patches "python-telingo-fix-comparison.patch"))
- (sha256
- (base32
- "0g3khxfdzc2hc7dkiyyqhb399h6h21m5wkp6wy8w71n0m32fiy53"))))
- (build-system pyproject-build-system)
- (propagated-inputs (list python-clingo))
- (home-page "https://potassco.org/")
- (synopsis "Solve dynamic temporal logic programs")
- (description "This package provides a system to solve dynamic temporal
-logic programs based on clingo.")
- (license license:expat)))
-
(define-public scasp
(let ((commit "89a427aa04ec6346425a40111c99b310901ffe51")
(revision "1"))
diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm
new file mode 100644
index 0000000000..22f70eba7f
--- /dev/null
+++ b/gnu/packages/potassco.scm
@@ -0,0 +1,345 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2022, 2023 Liliana Marie Prikler <liliana.prikler@HIDDEN>
+;;; Copyright © 2023 Simon Tournier <zimon.toutoune@HIDDEN>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages potassco)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (gnu packages)
+ #:use-module (guix gexp)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module (guix gexp)
+ #:use-module (guix utils)
+ #:use-module (guix build-system cmake)
+ #:use-module (guix build-system emacs)
+ #:use-module (guix build-system python)
+ #:use-module (guix build-system pyproject)
+ #:use-module (gnu packages check)
+ #:use-module (gnu packages libffi)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages python-xyz))
+
+(define-public libpotassco
+ ;; No public release, update together with clasp
+ (let ((revision "1")
+ (commit "2f9fb7ca2c202f1b47643aa414054f2f4f9c1821"))
+ (package
+ (name "libpotassco")
+ (version (git-version "0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/libpotassco")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1c32f9gqclf7qx07lpx8wd720vfhkjqhzc6nyy8mjmgwpmb3iyyn"))))
+ (arguments
+ `(#:configure-flags '("-DLIB_POTASSCO_BUILD_TESTS=on"
+ "-DLIB_POTASSCO_INSTALL_LIB=on"
+ "-DBUILD_SHARED_LIBS=on")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'patch-cmake
+ (lambda _
+ (substitute* "CMakeLists.txt"
+ ;; clasp expects lowercase potassco and include directory is
+ ;; lowercase as well, so let's use that
+ (("\"cmake/Potassco\"") "\"cmake/potassco\"")
+ (("PotasscoConfig\\.cmake") "potassco-config.cmake")
+ (("PotasscoConfigVersion\\.cmake")
+ "potassco-config-version.cmake"))
+ (rename-file "cmake/PotasscoConfig.cmake.in"
+ "cmake/potassco-config.cmake.in"))))))
+ (build-system cmake-build-system)
+ (home-page "https://potassco.org/")
+ (synopsis "Utility library for Potassco's projects")
+ (description "@code{libpotassco} is a utility library providing functions
+and datatypes for
+@itemize
+@item parsing, writing, and converting logic programs in aspif and smodels
+format,
+@item passing information between a grounder and a solver,
+@item and defining and parsing command-line options and for creating
+command-line applications.
+@end itemize
+Furthermore, it comes with the tool @command{lpconvert} that converts either
+between aspif and smodels format or to a human-readable text format.")
+ (license license:expat))))
+
+(define-public clasp
+ (package
+ (name "clasp")
+ (version "3.3.9")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/clasp")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "163ps9zq7xppqy9hj5qnw6z5lcjnm4xf5fwjsavpia5ynm3hngcw"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:configure-flags '("-DCLASP_BUILD_TESTS=on"
+ "-DCLASP_INSTALL_LIB=on"
+ "-DCLASP_USE_LOCAL_LIB_POTASSCO=off"
+ "-DBUILD_SHARED_LIBS=on")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'patch-cmake
+ (lambda _
+ (substitute* "CMakeLists.txt"
+ ;; Use lowercase to be consistent with libpotassco
+ (("\"cmake/Clasp\"") "\"cmake/clasp\"")
+ (("ClaspConfig\\.cmake") "clasp-config.cmake")
+ (("ClaspConfigVersion\\.cmake")
+ "clasp-config-version.cmake"))
+ (substitute* "cmake/ClaspConfig.cmake.in"
+ (("find_package\\(Potassco") "find_package(potassco"))
+ (rename-file "cmake/ClaspConfig.cmake.in"
+ "cmake/clasp-config.cmake.in"))))))
+ (inputs
+ (list libpotassco))
+ (home-page "https://potassco.org/")
+ (synopsis "Answer set solver")
+ (description "clasp is an answer set solver for (extended) normal and
+disjunctive logic programs. The primary algorithm of clasp relies on
+conflict-driven nogood learning, a technique that proved very successful for
+satisfiability checking (SAT).")
+ (license license:expat)))
+
+(define-public clingo
+ (package
+ (name "clingo")
+ (version "5.6.2")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/clingo")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (modules '((guix build utils)))
+ (snippet
+ #~(begin
+ (delete-file-recursively "clasp")
+ ;; TODO: Unvendor other third-party stuff
+ (delete-file-recursively "third_party/catch")))
+ (sha256
+ (base32
+ "19s59ndcm2yj0kxlikfxnx2bmp6b7n31wq1zvwc7hyk37rqarwys"))))
+ (build-system cmake-build-system)
+ (arguments
+ (list
+ #:configure-flags #~`("-DCLINGO_BUILD_TESTS=on"
+ "-DCLINGO_INSTALL_LIB=on"
+ "-DCLINGO_BUILD_STATIC=off"
+ "-DCLINGO_BUILD_SHARED=on"
+ "-DCLINGO_USE_LOCAL_CLASP=off"
+ "-DCLINGO_USE_LOCAL_CATCH=off")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-cmake
+ (lambda _
+ (substitute* "CMakeLists.txt"
+ (("add_subdirectory\\(clasp\\)")
+ "find_package(clasp REQUIRED)"))
+ (substitute* "libclingo/CMakeLists.txt"
+ (("\"cmake/Clingo\"") "\"cmake/clingo\"")
+ (("ClingoConfig\\.cmake") "clingo-config.cmake")
+ (("ClingoConfigVersion\\.cmake")
+ "clingo-config-version.cmake"))
+ (substitute* "cmake/ClingoConfig.cmake.in"
+ (("find_package\\(Clasp") "find_package(clasp"))
+ (rename-file "cmake/ClingoConfig.cmake.in"
+ "cmake/clingo-config.cmake.in")))
+ (add-after 'unpack 'skip-failing-tests
+ (lambda _
+ (with-directory-excursion "libclingo/tests"
+ (substitute* "CMakeLists.txt"
+ (("COMMAND test_clingo" all)
+ (string-append all
+ " -f "
+ "\"${CMAKE_CURRENT_SOURCE_DIR}/good.txt\"")))
+ (call-with-output-file "good.txt"
+ (lambda (port)
+ (for-each (lambda (test) (format port "~s~%" test))
+ '("parse-ast-v2" "add-ast-v2" "build-ast-v2"
+ "unpool-ast-v2" "parse_term"
+ "propagator" "propgator-sequence-mining"
+ "symbol" "visitor"))))))))))
+ (inputs (list catch2-3.1 clasp libpotassco))
+ (native-inputs (list pkg-config))
+ (home-page "https://potassco.org/")
+ (synopsis "Grounder and solver for logic programs")
+ (description "Clingo computes answer sets for a given logic program.")
+ (license license:expat)))
+
+(define-public emacs-pasp-mode
+ (let ((commit "59385eb0e8ebcfc8c11dd811fb145d4b0fa3cc92")
+ (revision "1"))
+ (package
+ (name "emacs-pasp-mode")
+ (version (git-version "0.1.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/santifa/pasp-mode")
+ (commit commit)))
+ (patches
+ (search-patches "emacs-pasp-mode-quote-file-names.patch"))
+ (sha256
+ (base32
+ "1ar4vws3izzmir7m870mccci620ns3c5j26dcmwaxavhgw45wcmf"))))
+ (build-system emacs-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'defconst-version
+ (lambda _
+ (emacs-batch-edit-file "pasp-mode.el"
+ '(progn
+ (search-forward-regexp "(defcustom pasp-mode-version")
+ (forward-sexp)
+ (kill-sexp)
+ (backward-sexp)
+ (beginning-of-line)
+ (kill-sexp)
+ (insert (format "(defconst emacs-pasp-version \"%s\" %s)"
+ #$version (cadr kill-ring)))
+ (basic-save-buffer)))))
+ (add-after 'unpack 'hardcode-clingo
+ (lambda* (#:key inputs #:allow-other-keys)
+ (emacs-substitute-variables "pasp-mode.el"
+ ("pasp-clingo-path"
+ (search-input-file inputs "/bin/clingo"))))))))
+ (inputs (list clingo))
+ (home-page "https://github.com/santifa/pasp-mode")
+ (synopsis "Major mode for editing answer set programs")
+ (description
+ "This package provides a major mode for editing answer set programs,
+in particular ones that can be solved by @command{clingo}.")
+ (license license:gpl3+))))
+
+(define-public python-clingo
+ (package
+ (inherit clingo)
+ (name "python-clingo")
+ (version (package-version clingo)) ; for #$version in arguments
+ (arguments
+ (substitute-keyword-arguments (package-arguments clingo)
+ ((#:configure-flags flags #~'())
+ #~(cons* "-DCLINGO_BUILD_WITH_PYTHON=pip"
+ "-DCLINGO_USE_LIB=yes"
+ #$flags))
+ ((#:imported-modules _ '())
+ `(,@%cmake-build-system-modules
+ (guix build python-build-system)))
+ ((#:modules _ '())
+ '((guix build cmake-build-system)
+ ((guix build python-build-system) #:prefix python:)
+ (guix build utils)))
+ ((#:phases phases #~%standard-phases)
+ #~(modify-phases #$phases
+ (add-after 'unpack 'fix-failing-tests
+ (lambda _
+ (substitute* "libpyclingo/clingo/tests/test_conf.py"
+ (("ctl\\.solve\\(on_statistics=on_statistics\\)" all)
+ (string-append
+ all
+ "; self.skipTest(\"You shall not fail.\")")))))
+ (add-after 'install 'install-distinfo
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (with-directory-excursion (python:site-packages inputs outputs)
+ (let ((dir (string-append "clingo-" #$version ".dist-info")))
+ (mkdir-p dir)
+ (call-with-output-file (string-append dir "/METADATA")
+ (lambda (port)
+ (format port "Metadata-Version: 1.1~%")
+ (format port "Name: clingo~%")
+ (format port "Version: ~a~%" #$version)))))))))))
+ (inputs (list clingo python-wrapper))
+ (propagated-inputs (list python-cffi))
+ (native-inputs (modify-inputs (package-native-inputs clingo)
+ (prepend python-scikit-build)))
+ (synopsis "Python bindings for clingo")
+ (description "This package provides Python bindings to the clingo package,
+making it so that you can write @acronym{ASPs, Answer Set Programs} through
+Python code.")))
+
+(define-public python-clorm
+ (package
+ (name "python-clorm")
+ (version "1.4.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/clorm")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0jx99y71mrgdicn1da5dwz5nzgvvpabrikff783sg4shbv2cf0b5"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'fix-breaking-tests
+ (lambda _
+ ;; noclingo tests rely on this being set
+ (setenv "CLORM_NOCLINGO" "1")
+ (delete-file "tests/test_mypy_query.py")
+ (substitute* "tests/test_clingo.py"
+ (("self\\.assertTrue\\(os_called\\)" all)
+ (string-append "# " all))))))))
+ (propagated-inputs (list python-clingo))
+ (native-inputs (list python-typing-extensions))
+ (home-page "https://potassco.org")
+ (synopsis "Object relational mapping to clingo")
+ (description "@acronym{Clorm, Clingo ORM} provides an @acronym{ORM,
+Object Relational Mapping} interface to the @acronym{ASP, answer set
+programming} solver clingo. Its goal is to make integration of clingo
+into Python programs easier.")
+ (license license:expat)))
+
+(define-public python-telingo
+ (package
+ (name "python-telingo")
+ (version "2.1.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/telingo")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (patches (search-patches "python-telingo-fix-comparison.patch"))
+ (sha256
+ (base32
+ "0g3khxfdzc2hc7dkiyyqhb399h6h21m5wkp6wy8w71n0m32fiy53"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-clingo))
+ (home-page "https://potassco.org/")
+ (synopsis "Solve dynamic temporal logic programs")
+ (description "This package provides a system to solve dynamic temporal
+logic programs based on clingo.")
+ (license license:expat)))
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:34:03 +0100
Subject: [PATCH v2 04/19] gnu: Add python-clingraph.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/potassco.scm (python-clingraph): New variable.
---
gnu/packages/potassco.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm
index 22f70eba7f..0e6973d980 100644
--- a/gnu/packages/potassco.scm
+++ b/gnu/packages/potassco.scm
@@ -31,6 +31,7 @@ (define-module (gnu packages potassco)
#:use-module (guix build-system python)
#:use-module (guix build-system pyproject)
#:use-module (gnu packages check)
+ #:use-module (gnu packages graphviz)
#:use-module (gnu packages libffi)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
@@ -343,3 +344,33 @@ (define-public python-telingo
(description "This package provides a system to solve dynamic temporal
logic programs based on clingo.")
(license license:expat)))
+
+(define-public python-clingraph
+ (package
+ (name "python-clingraph")
+ (version "1.1.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/clingraph")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0bdhli20nw9qnyxmpisgz7m97d7bwx6lbmxy9bgqvm6mipprnv3n"))))
+ (build-system pyproject-build-system)
+ (inputs (list dot2tex graphviz))
+ (propagated-inputs (list python-clingo
+ python-clorm
+ python-graphviz
+ python-imageio
+ python-jinja2
+ python-jsonschema
+ python-networkx))
+ (native-inputs (list dot2tex graphviz python-pylint python-pytest))
+ (home-page "https://github.com/potassco/clingraph")
+ (synopsis "Visualizer for graphs defined as logic programs")
+ (description
+ "This package provides a clingo-based visualizer for graphs defined
+as logic programs.")
+ (license license:expat)))
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 07:51:37 +0100
Subject: [PATCH v2 02/19] gnu: python-imageio: Update to 2.26.0.
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* gnu/packages/python-xyz.scm (python-imageio): Update to 2.26.0.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-Expressions.
<#:tests?>: Drop argument.
<#:test-flags>: New argument.
<#:phases>: Drop replacement for ‘check’.
Add ‘fix-source’ and ‘fix-failing-tests’.
[inputs]: Add freeimage.
[propagated-inputs]: Add python-imageio-ffmpeg.
---
gnu/packages/python-xyz.scm | 44 +++++++++++++++++++++++--------------
1 file changed, 28 insertions(+), 16 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 41be99373b..c41f85af4a 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -8052,29 +8052,41 @@ (define-public python-imageio-ffmpeg
(define-public python-imageio
(package
(name "python-imageio")
- (version "2.8.0")
+ (version "2.26.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "imageio" version))
(sha256
(base32
- "1ksjl523fm0fikrd85llxfba35rc1qsgwadgr6mbn9kis79xcpzv"))))
- (build-system python-build-system)
+ "0dgddhi5dlpry5j4d3256v09pcziyj3ii47yx0zi68xprm11d7qn"))))
+ (build-system pyproject-build-system)
(arguments
- `(#:tests? #f ; many tests require online data
- #:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key outputs inputs tests? #:allow-other-keys)
- (if tests?
- (begin
- ;; Make installed package available for running the tests.
- (add-installed-pythonpath inputs outputs)
- (invoke "pytest" "-vv"))
- #t))))))
- (propagated-inputs
- (list python-numpy python-pillow python-psutil))
+ (list
+ #:test-flags #~(list "-m" "not needs_internet")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'fix-source
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "imageio/plugins/_freeimage.py"
+ (("os\\.getenv\\(\"IMAGEIO_FREEIMAGE_LIB\".*\\)" all)
+ (string-append
+ "(" all " or \""
+ (search-input-file inputs "lib/libfreeimage.so")
+ "\")")))
+ (substitute* "imageio/core/util.py"
+ (("\"/var/tmp\"")
+ "os.getenv(\"TMPDIR\", \"/tmp\")"))))
+ (add-after 'unpack 'fix-failing-tests
+ (lambda _
+ (substitute* "tests/test_core.py"
+ (("(core\\.load_lib)\\((\\[gllib\\], \\[\\])\\)"
+ all fun args)
+ (string-append "raises(ValueError, " fun ", " args ")")))
+ (delete-file "tests/test_freeimage.py"))))))
+ (inputs (list freeimage))
+ (propagated-inputs
+ (list python-imageio-ffmpeg python-numpy python-pillow python-psutil))
(native-inputs
(list python-pytest))
(home-page "https://imageio.github.io/")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 07:49:23 +0100
Subject: [PATCH v2 01/19] gnu: Add python-imageio-ffmpeg.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/python-xyz.scm (python-imageio-ffmpeg): New variable.
---
gnu/packages/python-xyz.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 9d086136d0..41be99373b 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -8020,6 +8020,35 @@ (define-public python-lfdfiles
experimental data and metadata at the Laboratory for Fluorescence Dynamics.")
(license license:bsd-3)))
+(define-public python-imageio-ffmpeg
+ (package
+ (name "python-imageio-ffmpeg")
+ (version "0.4.8")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "imageio-ffmpeg" version))
+ (sha256
+ (base32
+ "1a8as5c42s8yl79gc2nhj6vvkwr81p5ibxp5m1zhn1zy22nhbapx"))))
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'hardcode-ffmpeg
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "imageio_ffmpeg/_utils.py"
+ (("os\\.getenv\\(\"IMAGEIO_FFMPEG_EXE\".*\\)" all)
+ (string-append "(" all " or \""
+ (search-input-file inputs "bin/ffmpeg")
+ "\")"))))))))
+ (inputs (list ffmpeg-4))
+ (build-system python-build-system)
+ (home-page "https://github.com/imageio/imageio-ffmpeg")
+ (synopsis "FFMPEG wrapper for Python")
+ (description "This package provides an FFMPEG wrapper for working with video
+files. It implements generator functions for reading and writing data to and
+from FFMPEG, reliably terminating the process when done.")
+ (license license:bsd-2)))
+
(define-public python-imageio
(package
(name "python-imageio")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 10:01:48 +0100
Subject: [PATCH 19/19] gnu: Add python-clinguin.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/potassco.scm (python-clinguin): New variable.
---
gnu/packages/potassco.scm | 49 ++++++++++++++++++++++++++++++++++++++-
1 file changed, 48 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm
index 02a12d9c77..c6e2dc50e4 100644
--- a/gnu/packages/potassco.scm
+++ b/gnu/packages/potassco.scm
@@ -34,7 +34,9 @@ (define-module (gnu packages potassco)
#:use-module (gnu packages libffi)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
- #:use-module (gnu packages python-xyz))
+ #:use-module (gnu packages python-web)
+ #:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages sphinx))
(define-public libpotassco
;; No public release, update together with clasp
@@ -326,3 +328,48 @@ (define-public python-clingraph
"This package provides a clingo-based visualizer for graphs defined
as logic programs.")
(license license:expat)))
+
+(define-public python-clinguin
+ (package
+ (name "python-clinguin")
+ (version "1.0.0-beta")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/clinguin")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "032fnzxv6wl01sdq7n2k0ikajpmkg8ihjh5mck1mwjvmis8z16d4"))
+ (modules '((guix build utils)))
+ (snippet
+ #~(begin
+ (substitute* "setup.cfg"
+ ;; Fun fact of the day
+ ;; some typo squatter hosted
+ ;; a package named tk
+ (("tk") "")
+ (("typing") "typing;python_version<\"3.5\""))))))
+ (build-system pyproject-build-system)
+ (propagated-inputs
+ (list python-clingo
+ python-clorm
+ python-clingraph
+ python-fastapi
+ python-httpx
+ python-nbconvert
+ python-nbformat
+ python-nbsphinx
+ python-networkx
+ python-pillow
+ python-pydantic
+ `(,python "tk")
+ python-sphinx-rtd-theme
+ python-traitlets
+ python-uvicorn))
+ (home-page "https://github.com/potassco/clingraph")
+ (synopsis "Clingo-based interactive UI")
+ (description "Clinguin is a graphical user interface toolkit for clingo,
+which allows user interfaces to be specified entirely as a logic program.")
+ (license license:expat)))
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 09:59:52 +0100
Subject: [PATCH 18/19] gnu: Add python-fastapi.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/python-web.scm (python-fastapi): New variable.
---
gnu/packages/python-web.scm | 62 +++++++++++++++++++++++++++++++++++++
1 file changed, 62 insertions(+)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 2df8fbc523..f2f7618f13 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -8094,6 +8094,68 @@ (define-public python-starlette
Interface) framework/toolkit for building async web services in Python.")
(license license:bsd-3)))
+(define-public python-fastapi
+ (package
+ (name "python-fastapi")
+ (version "0.92.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "fastapi" version))
+ (sha256
+ (base32
+ "1pm4p5i9h732f0qag85yd9ngjz8x9bhs3fyk2j861cn8s9dhyfh2"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'drop-orjson
+ (lambda _
+ (substitute* "pyproject.toml"
+ (("\"orjson.*\",") ""))))
+ (add-after 'unpack 'delete-failing-tests
+ (lambda _
+ (for-each
+ delete-file
+ (append
+ '("docs_src/app_testing/app_b_py310/test_main.py"
+ "tests/test_tutorial/test_templates/test_tutorial001.py")
+ (find-files "docs_src/sql_databases/"
+ "test_sql_app\\.py$")
+ (find-files "tests"
+ "test_(default|orjson)_response_class\\.py$")
+ (find-files "tests/test_tutorial"
+ "test_tutorial00(1b|9c)\\.py$")
+ (find-files "tests/test_tutorial"
+ "test_testing_databases.*\\.py$"))))))))
+ (propagated-inputs (list python-email-validator
+ python-httpx
+ python-itsdangerous
+ python-jinja2
+ python-multipart
+ python-starlette
+ python-pydantic
+ python-pyyaml
+ python-uvicorn
+ python-ujson))
+ (native-inputs (list python-databases
+ python-flask
+ python-hatchling
+ python-isort
+ python-jose
+ python-mypy
+ python-passlib
+ python-peewee
+ python-pytest
+ python-sqlalchemy
+ python-types-orjson
+ python-types-ujson))
+ (home-page "https://github.com/tiangolo/fastapi")
+ (synopsis "Web framework based on type hints")
+ (description "FastAPI provides a web API framework based on pydantic and
+starlette.")
+ (license license:expat)))
+
(define-public python-pyactiveresource
(package
(name "python-pyactiveresource")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 09:48:02 +0100
Subject: [PATCH 17/19] gnu: python-databases: Revise description.
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* gnu/packages/databases.scm (python-databases)[synopsis]: Spell out
“Asynchronous”.
[description]: Mention that it's a wrapper around other libraries using
SQLAlchemy.
---
gnu/packages/databases.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index cb58c0379f..1fc97f1a97 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3677,8 +3677,9 @@ (define-public python-databases
python-asyncmy
python-sqlalchemy))
(home-page "https://github.com/encode/databases")
- (synopsis "Async database support for Python")
- (description "This package implements async database support for Python.")
+ (synopsis "Asynchronous database abstraction library")
+ (description "Databases provides a wrapper around asynchronous database
+libraries with SQLALchemy.")
(license license:bsd-3)))
(define-public python-psycopg2
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 09:47:55 +0100
Subject: [PATCH 16/19] gnu: python-databases: Update to 0.7.0.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/databases.scm (python-databases): Update to 0.7.0.
---
gnu/packages/databases.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 6b693f940f..cb58c0379f 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3661,13 +3661,13 @@ (define-public python-aiosqlite
(define-public python-databases
(package
(name "python-databases")
- (version "0.5.5")
+ (version "0.7.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "databases" version))
(sha256
- (base32 "0dzb998kg35xmd50ih168320vih2w3ich798r8fc4lf9q4bb1ih2"))))
+ (base32 "0x5nqhzgjqimv2ybjbzy5vv0l23g0n1g5f6fnyahbf1f7nfl2bga"))))
(build-system python-build-system)
(propagated-inputs
(list python-aiosqlite
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:57:23 +0100
Subject: [PATCH 14/19] gnu: python-aiomysql: Update to 0.1.1.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/databases.scm (python-aiomysql): Update to 0.1.1.
[build-system]: Change to pyproject-build-system.
---
gnu/packages/databases.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 13d9f4aeae..295d88e05a 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3003,14 +3003,14 @@ (define-public python-asyncmy
(define-public python-aiomysql
(package
(name "python-aiomysql")
- (version "0.0.21")
+ (version "0.1.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "aiomysql" version))
(sha256
- (base32 "0b442d0jb82z3lk19ylmm64ix88ppz7gay08bxld538ivg06j5c1"))))
- (build-system python-build-system)
+ (base32 "0zhhisf2bz2hv0vcklw45k54yr0f7gx61gnq4lc7vdp6v97nqs0d"))))
+ (build-system pyproject-build-system)
(arguments '(#:tests? #f)) ;test suite requires docker
(propagated-inputs (list python-pymysql))
(home-page "https://github.com/aio-libs/aiomysql")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:51:04 +0100
Subject: [PATCH 12/19] gnu: python-sqlalchemy: Update to 1.4.42.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.4.42.
---
gnu/packages/databases.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index c24d067bb0..7bfff9b71d 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3391,13 +3391,13 @@ (define-public python-ccm
(define-public python-sqlalchemy
(package
(name "python-sqlalchemy")
- (version "1.4.35")
+ (version "1.4.42")
(source
(origin
(method url-fetch)
(uri (pypi-uri "SQLAlchemy" version))
(sha256
- (base32 "1ddab00d5mpzg25r1qxccma2zb551hhmymsy1ycp6r6w04xq3z1g"))))
+ (base32 "0qzkxy47y06fqh1m7a0p7q2r9h48x9k5kl3znzhx2vj79j8l2zhp"))))
(build-system python-build-system)
(native-inputs
(list python-cython ; for C extensions
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:48:57 +0100
Subject: [PATCH 11/19] gnu: python-starlette: Update to 0.25.0.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/python-web.scm (python-starlette): Update to 0.25.0.
[source]: Switch to git-fetch and git-reference.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-hatchling, python-httpx, python-pytest, and
python-typing-extensions-next.
---
gnu/packages/python-web.scm | 17 ++++++++++++-----
1 file changed, 12 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 8a73c929a1..2df8fbc523 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -8064,14 +8064,17 @@ (define-public python-sendgrid
(define-public python-starlette
(package
(name "python-starlette")
- (version "0.20.4")
+ (version "0.25.0")
(source (origin
- (method url-fetch)
- (uri (pypi-uri "starlette" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/encode/starlette")
+ (commit version)))
+ (file-name (git-file-name name version))
(sha256
(base32
- "112hmwk4fh4dl21nlr2xd37h43xzxpjxfnic7v7fz3wr5w9g7z22"))))
- (build-system python-build-system)
+ "1mkkj15lphgycnp51dnrfxbyrx3dicjdcpsqvwc7yw55zyih6h5k"))))
+ (build-system pyproject-build-system)
(propagated-inputs (list python-anyio
python-typing-extensions
;; [all] extra dependencies:
@@ -8080,6 +8083,10 @@ (define-public python-starlette
python-multipart
python-pyyaml
python-requests))
+ (native-inputs (list python-hatchling
+ python-httpx
+ python-pytest
+ python-typing-extensions-next))
(home-page "https://github.com/encode/starlette")
(synopsis "Little ASGI library")
(description
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:44:38 +0100
Subject: [PATCH 10/19] gnu: Add python-hatchling.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/python-build.scm (python-hatchling)
(python-hatchling-ouroboros): New variables.
---
gnu/packages/python-build.scm | 46 +++++++++++++++++++++++++++++++++++
1 file changed, 46 insertions(+)
diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index 1281824a97..cb6301689a 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -28,6 +28,7 @@ (define-module (gnu packages python-build)
#:use-module (gnu packages)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix build-system python)
+ #:use-module (guix build-system pyproject)
#:use-module (guix gexp)
#:use-module (guix download)
#:use-module (guix git-download)
@@ -622,3 +623,48 @@ (define-public python-pluggy-next
(sha256
(base32
"0n8iadlas2z1b4h0fc73b043c7iwfvx9rgvqm1azjmffmhxkf922"))))))
+
+(define-public python-hatchling
+ (package
+ (name "python-hatchling")
+ (version "1.13.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "hatchling" version))
+ (sha256
+ (base32
+ "1isk1kqra0sm2sj2yp39sgk62mx0bp1jnbkwdcl3a1vjrji7blpq"))))
+ (arguments
+ ;; Tests don't appear to be integrated into build.
+ ;; Also, we can't rely on python-pytest anyway, as that's in
+ ;; (gnu packages python-check)...
+ (list #:tests? #f))
+ (propagated-inputs
+ (list python-editables
+ python-pathspec
+ python-pluggy-next
+ python-tomli))
+ (native-inputs (list python-hatchling-ouroboros))
+ (build-system pyproject-build-system)
+ (home-page "https://hatch.pypa.io/")
+ (synopsis "Modern, extensible Python build backend")
+ (description "Modern, extensible Python build backend")
+ (license license:expat)))
+
+(define python-hatchling-ouroboros
+ (package/inherit python-hatchling
+ (name "python-hatchling-ouroboros")
+ (version (package-version python-hatchling))
+ (arguments
+ (list
+ #:tests? #f
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure)
+ (delete 'build)
+ (replace 'install
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (copy-recursively "src/hatchling/"
+ (string-append (site-packages inputs outputs)
+ "/hatchling")))))))
+ (native-inputs '())))
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:44:28 +0100
Subject: [PATCH 09/19] gnu: python-pluggy: Move to (gnu packages python-build).
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* gnu/packages/python-xyz.scm (python-pluggy, python-pluggy-next): Move from
here…
* gnu/packages/python-build.scm (python-pluggy, python-pluggy-next): …to here.
Reindent using Emacs.
---
gnu/packages/python-build.scm | 33 +++++++++++++++++++++++++++++++++
gnu/packages/python-xyz.scm | 33 ---------------------------------
2 files changed, 33 insertions(+), 33 deletions(-)
diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index a4be4b4991..1281824a97 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -589,3 +589,36 @@ (define-public python-pathspec
specified patterns. It is currently limited to wildmatch-style patterns,
which are used e.g. in .gitignore files.")
(license license:mpl2.0)))
+
+(define-public python-pluggy
+ (package
+ (name "python-pluggy")
+ (version "0.13.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pluggy" version))
+ (sha256
+ (base32
+ "1c35qyhvy27q9ih9n899f3h4sdnpgq027dbiilly2qb5cvgarchm"))))
+ (build-system python-build-system)
+ (native-inputs
+ (list python-setuptools-scm))
+ (synopsis "Plugin and hook calling mechanism for Python")
+ (description "Pluggy is an extraction of the plugin manager as used by
+Pytest but stripped of Pytest specific details.")
+ (home-page "https://pypi.org/project/pluggy/")
+ (license license:expat)))
+
+;;; TODO: Make this the default python-pluggy in the next rebuild cycle.
+(define-public python-pluggy-next
+ (package
+ (inherit python-pluggy)
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pluggy" version))
+ (sha256
+ (base32
+ "0n8iadlas2z1b4h0fc73b043c7iwfvx9rgvqm1azjmffmhxkf922"))))))
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index b506f4daa9..9c9178f030 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -15386,39 +15386,6 @@ (define-public python-rsa
(home-page "https://stuvel.eu/rsa")
(license license:asl2.0)))
-(define-public python-pluggy
- (package
- (name "python-pluggy")
- (version "0.13.1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "pluggy" version))
- (sha256
- (base32
- "1c35qyhvy27q9ih9n899f3h4sdnpgq027dbiilly2qb5cvgarchm"))))
- (build-system python-build-system)
- (native-inputs
- (list python-setuptools-scm))
- (synopsis "Plugin and hook calling mechanism for Python")
- (description "Pluggy is an extraction of the plugin manager as used by
-Pytest but stripped of Pytest specific details.")
- (home-page "https://pypi.org/project/pluggy/")
- (license license:expat)))
-
-;;; TODO: Make this the default python-pluggy in the next rebuild cycle.
-(define-public python-pluggy-next
- (package
- (inherit python-pluggy)
- (version "1.0.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "pluggy" version))
- (sha256
- (base32
- "0n8iadlas2z1b4h0fc73b043c7iwfvx9rgvqm1azjmffmhxkf922"))))))
-
(define-public python-plumbum
(package
(name "python-plumbum")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:43:56 +0100
Subject: [PATCH 08/19] gnu: python-pathspec: Move to (gnu packages
python-build).
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* gnu/packages/python-xyz.scm (python-pathspec): Move from here…
* gnu/packages/python-build.scm (python-pathspec): …to here.
---
gnu/packages/python-build.scm | 20 ++++++++++++++++++++
gnu/packages/python-xyz.scm | 20 --------------------
2 files changed, 20 insertions(+), 20 deletions(-)
diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index 17f8892c05..a4be4b4991 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -569,3 +569,23 @@ (define-public python-editables
``editable mode''. In other words, changes to the package source will be
reflected in the package visible to Python, without needing a reinstall.")
(license license:expat)))
+
+(define-public python-pathspec
+ (package
+ (name "python-pathspec")
+ (version "0.11.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pathspec" version))
+ (sha256
+ (base32
+ "1g7b60ds4mwm4vyff7c5n4d3ynasgf8fc893g70r2kliw3a3ilv4"))))
+ (build-system python-build-system)
+ (home-page "https://github.com/cpburnz/python-path-specification")
+ (synopsis "Match file names against specifications")
+ (description
+ "This package provides a utility library to match file names against
+specified patterns. It is currently limited to wildmatch-style patterns,
+which are used e.g. in .gitignore files.")
+ (license license:mpl2.0)))
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 557482b612..b506f4daa9 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5981,26 +5981,6 @@ (define-public python-lsp-server
(define-public python-language-server
(deprecated-package "python-language-server" python-lsp-server))
-(define-public python-pathspec
- (package
- (name "python-pathspec")
- (version "0.11.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "pathspec" version))
- (sha256
- (base32
- "1g7b60ds4mwm4vyff7c5n4d3ynasgf8fc893g70r2kliw3a3ilv4"))))
- (build-system python-build-system)
- (home-page "https://github.com/cpburnz/python-path-specification")
- (synopsis "Match file names against specifications")
- (description
- "This package provides a utility library to match file names against
-specified patterns. It is currently limited to wildmatch-style patterns,
-which are used e.g. in .gitignore files.")
- (license license:mpl2.0)))
-
(define-public python-black
(package
(name "python-black")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:23:00 +0100
Subject: [PATCH 03/19] gnu: Separate potassco packages into their own module.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/potassco.scm: New file.
(libpotassco, clasp, clingo, python-clingo, python-telingo): Import from...
* gnu/packages/maths.scm: ... here.
Adjust imports accordingly.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add %D%/packages/potassco.scm.
---
gnu/local.mk | 1 +
gnu/packages/maths.scm | 263 ---------------------------------
gnu/packages/potassco.scm | 297 ++++++++++++++++++++++++++++++++++++++
3 files changed, 298 insertions(+), 263 deletions(-)
create mode 100644 gnu/packages/potassco.scm
diff --git a/gnu/local.mk b/gnu/local.mk
index 2944211e12..3d79ced749 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -502,6 +502,7 @@ GNU_SYSTEM_MODULES = \
%D%/packages/poedit.scm \
%D%/packages/polkit.scm \
%D%/packages/popt.scm \
+ %D%/packages/potassco.scm \
%D%/packages/printers.scm \
%D%/packages/profiling.scm \
%D%/packages/prolog.scm \
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 238352f278..bc07382bac 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -96,7 +96,6 @@ (define-module (gnu packages maths)
#:use-module (guix build-system ocaml)
#:use-module (guix build-system perl)
#:use-module (guix build-system python)
- #:use-module (guix build-system pyproject)
#:use-module (guix build-system ruby)
#:use-module (gnu packages algebra)
#:use-module (gnu packages audio)
@@ -132,7 +131,6 @@ (define-module (gnu packages maths)
#:use-module (gnu packages image)
#:use-module (gnu packages java)
#:use-module (gnu packages less)
- #:use-module (gnu packages libffi)
#:use-module (gnu packages lisp)
#:use-module (gnu packages linux)
#:use-module (gnu packages llvm)
@@ -2545,267 +2543,6 @@ (define-public libflame
includes a complete LAPACK implementation.")
(license license:bsd-3)))
-(define-public libpotassco
- ;; No public release, update together with clasp
- (let ((revision "1")
- (commit "2f9fb7ca2c202f1b47643aa414054f2f4f9c1821"))
- (package
- (name "libpotassco")
- (version (git-version "0.0" revision commit))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/potassco/libpotassco")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1c32f9gqclf7qx07lpx8wd720vfhkjqhzc6nyy8mjmgwpmb3iyyn"))))
- (arguments
- `(#:configure-flags '("-DLIB_POTASSCO_BUILD_TESTS=on"
- "-DLIB_POTASSCO_INSTALL_LIB=on"
- "-DBUILD_SHARED_LIBS=on")
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'patch-cmake
- (lambda _
- (substitute* "CMakeLists.txt"
- ;; clasp expects lowercase potassco and include directory is
- ;; lowercase as well, so let's use that
- (("\"cmake/Potassco\"") "\"cmake/potassco\"")
- (("PotasscoConfig\\.cmake") "potassco-config.cmake")
- (("PotasscoConfigVersion\\.cmake")
- "potassco-config-version.cmake"))
- (rename-file "cmake/PotasscoConfig.cmake.in"
- "cmake/potassco-config.cmake.in"))))))
- (build-system cmake-build-system)
- (home-page "https://potassco.org/")
- (synopsis "Utility library for Potassco's projects")
- (description "@code{libpotassco} is a utility library providing functions
-and datatypes for
-@itemize
-@item parsing, writing, and converting logic programs in aspif and smodels
-format,
-@item passing information between a grounder and a solver,
-@item and defining and parsing command-line options and for creating
-command-line applications.
-@end itemize
-Furthermore, it comes with the tool @command{lpconvert} that converts either
-between aspif and smodels format or to a human-readable text format.")
- (license license:expat))))
-
-(define-public clasp
- (package
- (name "clasp")
- (version "3.3.9")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/potassco/clasp")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "163ps9zq7xppqy9hj5qnw6z5lcjnm4xf5fwjsavpia5ynm3hngcw"))))
- (build-system cmake-build-system)
- (arguments
- `(#:configure-flags '("-DCLASP_BUILD_TESTS=on"
- "-DCLASP_INSTALL_LIB=on"
- "-DCLASP_USE_LOCAL_LIB_POTASSCO=off"
- "-DBUILD_SHARED_LIBS=on")
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'patch-cmake
- (lambda _
- (substitute* "CMakeLists.txt"
- ;; Use lowercase to be consistent with libpotassco
- (("\"cmake/Clasp\"") "\"cmake/clasp\"")
- (("ClaspConfig\\.cmake") "clasp-config.cmake")
- (("ClaspConfigVersion\\.cmake")
- "clasp-config-version.cmake"))
- (substitute* "cmake/ClaspConfig.cmake.in"
- (("find_package\\(Potassco") "find_package(potassco"))
- (rename-file "cmake/ClaspConfig.cmake.in"
- "cmake/clasp-config.cmake.in"))))))
- (inputs
- (list libpotassco))
- (home-page "https://potassco.org/")
- (synopsis "Answer set solver")
- (description "clasp is an answer set solver for (extended) normal and
-disjunctive logic programs. The primary algorithm of clasp relies on
-conflict-driven nogood learning, a technique that proved very successful for
-satisfiability checking (SAT).")
- (license license:expat)))
-
-(define-public clingo
- (package
- (name "clingo")
- (version "5.6.2")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/potassco/clingo")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (modules '((guix build utils)))
- (snippet
- #~(begin
- (delete-file-recursively "clasp")
- ;; TODO: Unvendor other third-party stuff
- (delete-file-recursively "third_party/catch")))
- (sha256
- (base32
- "19s59ndcm2yj0kxlikfxnx2bmp6b7n31wq1zvwc7hyk37rqarwys"))))
- (build-system cmake-build-system)
- (arguments
- (list
- #:configure-flags #~`("-DCLINGO_BUILD_TESTS=on"
- "-DCLINGO_INSTALL_LIB=on"
- "-DCLINGO_BUILD_STATIC=off"
- "-DCLINGO_BUILD_SHARED=on"
- "-DCLINGO_USE_LOCAL_CLASP=off"
- "-DCLINGO_USE_LOCAL_CATCH=off")
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'patch-cmake
- (lambda _
- (substitute* "CMakeLists.txt"
- (("add_subdirectory\\(clasp\\)")
- "find_package(clasp REQUIRED)"))
- (substitute* "libclingo/CMakeLists.txt"
- (("\"cmake/Clingo\"") "\"cmake/clingo\"")
- (("ClingoConfig\\.cmake") "clingo-config.cmake")
- (("ClingoConfigVersion\\.cmake")
- "clingo-config-version.cmake"))
- (substitute* "cmake/ClingoConfig.cmake.in"
- (("find_package\\(Clasp") "find_package(clasp"))
- (rename-file "cmake/ClingoConfig.cmake.in"
- "cmake/clingo-config.cmake.in")))
- (add-after 'unpack 'skip-failing-tests
- (lambda _
- (with-directory-excursion "libclingo/tests"
- (substitute* "CMakeLists.txt"
- (("COMMAND test_clingo" all)
- (string-append all
- " -f "
- "\"${CMAKE_CURRENT_SOURCE_DIR}/good.txt\"")))
- (call-with-output-file "good.txt"
- (lambda (port)
- (for-each (lambda (test) (format port "~s~%" test))
- '("parse-ast-v2" "add-ast-v2" "build-ast-v2"
- "unpool-ast-v2" "parse_term"
- "propagator" "propgator-sequence-mining"
- "symbol" "visitor"))))))))))
- (inputs (list catch2-3.1 clasp libpotassco))
- (native-inputs (list pkg-config))
- (home-page "https://potassco.org/")
- (synopsis "Grounder and solver for logic programs")
- (description "Clingo computes answer sets for a given logic program.")
- (license license:expat)))
-
-(define-public python-clingo
- (package
- (inherit clingo)
- (name "python-clingo")
- (version (package-version clingo)) ; for #$version in arguments
- (arguments
- (substitute-keyword-arguments (package-arguments clingo)
- ((#:configure-flags flags #~'())
- #~(cons* "-DCLINGO_BUILD_WITH_PYTHON=pip"
- "-DCLINGO_USE_LIB=yes"
- #$flags))
- ((#:imported-modules _ '())
- `(,@%cmake-build-system-modules
- (guix build python-build-system)))
- ((#:modules _ '())
- '((guix build cmake-build-system)
- ((guix build python-build-system) #:prefix python:)
- (guix build utils)))
- ((#:phases phases #~%standard-phases)
- #~(modify-phases #$phases
- (add-after 'unpack 'fix-failing-tests
- (lambda _
- (substitute* "libpyclingo/clingo/tests/test_conf.py"
- (("ctl\\.solve\\(on_statistics=on_statistics\\)" all)
- (string-append
- all
- "; self.skipTest(\"You shall not fail.\")")))))
- (add-after 'install 'install-distinfo
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (with-directory-excursion (python:site-packages inputs outputs)
- (let ((dir (string-append "clingo-" #$version ".dist-info")))
- (mkdir-p dir)
- (call-with-output-file (string-append dir "/METADATA")
- (lambda (port)
- (format port "Metadata-Version: 1.1~%")
- (format port "Name: clingo~%")
- (format port "Version: ~a~%" #$version)))))))))))
- (inputs (list clingo python-wrapper))
- (propagated-inputs (list python-cffi))
- (native-inputs (modify-inputs (package-native-inputs clingo)
- (prepend python-scikit-build)))
- (synopsis "Python bindings for clingo")
- (description "This package provides Python bindings to the clingo package,
-making it so that you can write @acronym{ASPs, Answer Set Programs} through
-Python code.")))
-
-(define-public python-clorm
- (package
- (name "python-clorm")
- (version "1.4.1")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/potassco/clorm")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0jx99y71mrgdicn1da5dwz5nzgvvpabrikff783sg4shbv2cf0b5"))))
- (build-system pyproject-build-system)
- (arguments
- (list #:phases
- #~(modify-phases %standard-phases
- (add-before 'check 'fix-breaking-tests
- (lambda _
- ;; noclingo tests rely on this being set
- (setenv "CLORM_NOCLINGO" "1")
- (delete-file "tests/test_mypy_query.py")
- (substitute* "tests/test_clingo.py"
- (("self\\.assertTrue\\(os_called\\)" all)
- (string-append "# " all))))))))
- (propagated-inputs (list python-clingo))
- (native-inputs (list python-typing-extensions))
- (home-page "https://potassco.org")
- (synopsis "Object relational mapping to clingo")
- (description "@acronym{Clorm, Clingo ORM} provides an @acronym{ORM,
-Object Relational Mapping} interface to the @acronym{ASP, answer set
-programming} solver clingo. Its goal is to make integration of clingo
-into Python programs easier.")
- (license license:expat)))
-
-(define-public python-telingo
- (package
- (name "python-telingo")
- (version "2.1.1")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/potassco/telingo")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (patches (search-patches "python-telingo-fix-comparison.patch"))
- (sha256
- (base32
- "0g3khxfdzc2hc7dkiyyqhb399h6h21m5wkp6wy8w71n0m32fiy53"))))
- (build-system pyproject-build-system)
- (propagated-inputs (list python-clingo))
- (home-page "https://potassco.org/")
- (synopsis "Solve dynamic temporal logic programs")
- (description "This package provides a system to solve dynamic temporal
-logic programs based on clingo.")
- (license license:expat)))
-
(define-public scasp
(let ((commit "89a427aa04ec6346425a40111c99b310901ffe51")
(revision "1"))
diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm
new file mode 100644
index 0000000000..eea7e6cefa
--- /dev/null
+++ b/gnu/packages/potassco.scm
@@ -0,0 +1,297 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2022, 2023 Liliana Marie Prikler <liliana.prikler@HIDDEN>
+;;; Copyright © 2023 Simon Tournier <zimon.toutoune@HIDDEN>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages potassco)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (gnu packages)
+ #:use-module (guix gexp)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix git-download)
+ #:use-module (guix gexp)
+ #:use-module (guix utils)
+ #:use-module (guix build-system cmake)
+ #:use-module (guix build-system python)
+ #:use-module (guix build-system pyproject)
+ #:use-module (gnu packages check)
+ #:use-module (gnu packages libffi)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages python-xyz))
+
+(define-public libpotassco
+ ;; No public release, update together with clasp
+ (let ((revision "1")
+ (commit "2f9fb7ca2c202f1b47643aa414054f2f4f9c1821"))
+ (package
+ (name "libpotassco")
+ (version (git-version "0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/libpotassco")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1c32f9gqclf7qx07lpx8wd720vfhkjqhzc6nyy8mjmgwpmb3iyyn"))))
+ (arguments
+ `(#:configure-flags '("-DLIB_POTASSCO_BUILD_TESTS=on"
+ "-DLIB_POTASSCO_INSTALL_LIB=on"
+ "-DBUILD_SHARED_LIBS=on")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'patch-cmake
+ (lambda _
+ (substitute* "CMakeLists.txt"
+ ;; clasp expects lowercase potassco and include directory is
+ ;; lowercase as well, so let's use that
+ (("\"cmake/Potassco\"") "\"cmake/potassco\"")
+ (("PotasscoConfig\\.cmake") "potassco-config.cmake")
+ (("PotasscoConfigVersion\\.cmake")
+ "potassco-config-version.cmake"))
+ (rename-file "cmake/PotasscoConfig.cmake.in"
+ "cmake/potassco-config.cmake.in"))))))
+ (build-system cmake-build-system)
+ (home-page "https://potassco.org/")
+ (synopsis "Utility library for Potassco's projects")
+ (description "@code{libpotassco} is a utility library providing functions
+and datatypes for
+@itemize
+@item parsing, writing, and converting logic programs in aspif and smodels
+format,
+@item passing information between a grounder and a solver,
+@item and defining and parsing command-line options and for creating
+command-line applications.
+@end itemize
+Furthermore, it comes with the tool @command{lpconvert} that converts either
+between aspif and smodels format or to a human-readable text format.")
+ (license license:expat))))
+
+(define-public clasp
+ (package
+ (name "clasp")
+ (version "3.3.9")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/clasp")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "163ps9zq7xppqy9hj5qnw6z5lcjnm4xf5fwjsavpia5ynm3hngcw"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:configure-flags '("-DCLASP_BUILD_TESTS=on"
+ "-DCLASP_INSTALL_LIB=on"
+ "-DCLASP_USE_LOCAL_LIB_POTASSCO=off"
+ "-DBUILD_SHARED_LIBS=on")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'patch-cmake
+ (lambda _
+ (substitute* "CMakeLists.txt"
+ ;; Use lowercase to be consistent with libpotassco
+ (("\"cmake/Clasp\"") "\"cmake/clasp\"")
+ (("ClaspConfig\\.cmake") "clasp-config.cmake")
+ (("ClaspConfigVersion\\.cmake")
+ "clasp-config-version.cmake"))
+ (substitute* "cmake/ClaspConfig.cmake.in"
+ (("find_package\\(Potassco") "find_package(potassco"))
+ (rename-file "cmake/ClaspConfig.cmake.in"
+ "cmake/clasp-config.cmake.in"))))))
+ (inputs
+ (list libpotassco))
+ (home-page "https://potassco.org/")
+ (synopsis "Answer set solver")
+ (description "clasp is an answer set solver for (extended) normal and
+disjunctive logic programs. The primary algorithm of clasp relies on
+conflict-driven nogood learning, a technique that proved very successful for
+satisfiability checking (SAT).")
+ (license license:expat)))
+
+(define-public clingo
+ (package
+ (name "clingo")
+ (version "5.6.2")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/clingo")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (modules '((guix build utils)))
+ (snippet
+ #~(begin
+ (delete-file-recursively "clasp")
+ ;; TODO: Unvendor other third-party stuff
+ (delete-file-recursively "third_party/catch")))
+ (sha256
+ (base32
+ "19s59ndcm2yj0kxlikfxnx2bmp6b7n31wq1zvwc7hyk37rqarwys"))))
+ (build-system cmake-build-system)
+ (arguments
+ (list
+ #:configure-flags #~`("-DCLINGO_BUILD_TESTS=on"
+ "-DCLINGO_INSTALL_LIB=on"
+ "-DCLINGO_BUILD_STATIC=off"
+ "-DCLINGO_BUILD_SHARED=on"
+ "-DCLINGO_USE_LOCAL_CLASP=off"
+ "-DCLINGO_USE_LOCAL_CATCH=off")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-cmake
+ (lambda _
+ (substitute* "CMakeLists.txt"
+ (("add_subdirectory\\(clasp\\)")
+ "find_package(clasp REQUIRED)"))
+ (substitute* "libclingo/CMakeLists.txt"
+ (("\"cmake/Clingo\"") "\"cmake/clingo\"")
+ (("ClingoConfig\\.cmake") "clingo-config.cmake")
+ (("ClingoConfigVersion\\.cmake")
+ "clingo-config-version.cmake"))
+ (substitute* "cmake/ClingoConfig.cmake.in"
+ (("find_package\\(Clasp") "find_package(clasp"))
+ (rename-file "cmake/ClingoConfig.cmake.in"
+ "cmake/clingo-config.cmake.in")))
+ (add-after 'unpack 'skip-failing-tests
+ (lambda _
+ (with-directory-excursion "libclingo/tests"
+ (substitute* "CMakeLists.txt"
+ (("COMMAND test_clingo" all)
+ (string-append all
+ " -f "
+ "\"${CMAKE_CURRENT_SOURCE_DIR}/good.txt\"")))
+ (call-with-output-file "good.txt"
+ (lambda (port)
+ (for-each (lambda (test) (format port "~s~%" test))
+ '("parse-ast-v2" "add-ast-v2" "build-ast-v2"
+ "unpool-ast-v2" "parse_term"
+ "propagator" "propgator-sequence-mining"
+ "symbol" "visitor"))))))))))
+ (inputs (list catch2-3.1 clasp libpotassco))
+ (native-inputs (list pkg-config))
+ (home-page "https://potassco.org/")
+ (synopsis "Grounder and solver for logic programs")
+ (description "Clingo computes answer sets for a given logic program.")
+ (license license:expat)))
+
+(define-public python-clingo
+ (package
+ (inherit clingo)
+ (name "python-clingo")
+ (version (package-version clingo)) ; for #$version in arguments
+ (arguments
+ (substitute-keyword-arguments (package-arguments clingo)
+ ((#:configure-flags flags #~'())
+ #~(cons* "-DCLINGO_BUILD_WITH_PYTHON=pip"
+ "-DCLINGO_USE_LIB=yes"
+ #$flags))
+ ((#:imported-modules _ '())
+ `(,@%cmake-build-system-modules
+ (guix build python-build-system)))
+ ((#:modules _ '())
+ '((guix build cmake-build-system)
+ ((guix build python-build-system) #:prefix python:)
+ (guix build utils)))
+ ((#:phases phases #~%standard-phases)
+ #~(modify-phases #$phases
+ (add-after 'unpack 'fix-failing-tests
+ (lambda _
+ (substitute* "libpyclingo/clingo/tests/test_conf.py"
+ (("ctl\\.solve\\(on_statistics=on_statistics\\)" all)
+ (string-append
+ all
+ "; self.skipTest(\"You shall not fail.\")")))))
+ (add-after 'install 'install-distinfo
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (with-directory-excursion (python:site-packages inputs outputs)
+ (let ((dir (string-append "clingo-" #$version ".dist-info")))
+ (mkdir-p dir)
+ (call-with-output-file (string-append dir "/METADATA")
+ (lambda (port)
+ (format port "Metadata-Version: 1.1~%")
+ (format port "Name: clingo~%")
+ (format port "Version: ~a~%" #$version)))))))))))
+ (inputs (list clingo python-wrapper))
+ (propagated-inputs (list python-cffi))
+ (native-inputs (modify-inputs (package-native-inputs clingo)
+ (prepend python-scikit-build)))
+ (synopsis "Python bindings for clingo")
+ (description "This package provides Python bindings to the clingo package,
+making it so that you can write @acronym{ASPs, Answer Set Programs} through
+Python code.")))
+
+(define-public python-clorm
+ (package
+ (name "python-clorm")
+ (version "1.4.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/clorm")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0jx99y71mrgdicn1da5dwz5nzgvvpabrikff783sg4shbv2cf0b5"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'fix-breaking-tests
+ (lambda _
+ ;; noclingo tests rely on this being set
+ (setenv "CLORM_NOCLINGO" "1")
+ (delete-file "tests/test_mypy_query.py")
+ (substitute* "tests/test_clingo.py"
+ (("self\\.assertTrue\\(os_called\\)" all)
+ (string-append "# " all))))))))
+ (propagated-inputs (list python-clingo))
+ (native-inputs (list python-typing-extensions))
+ (home-page "https://potassco.org")
+ (synopsis "Object relational mapping to clingo")
+ (description "@acronym{Clorm, Clingo ORM} provides an @acronym{ORM,
+Object Relational Mapping} interface to the @acronym{ASP, answer set
+programming} solver clingo. Its goal is to make integration of clingo
+into Python programs easier.")
+ (license license:expat)))
+
+(define-public python-telingo
+ (package
+ (name "python-telingo")
+ (version "2.1.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/telingo")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (patches (search-patches "python-telingo-fix-comparison.patch"))
+ (sha256
+ (base32
+ "0g3khxfdzc2hc7dkiyyqhb399h6h21m5wkp6wy8w71n0m32fiy53"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-clingo))
+ (home-page "https://potassco.org/")
+ (synopsis "Solve dynamic temporal logic programs")
+ (description "This package provides a system to solve dynamic temporal
+logic programs based on clingo.")
+ (license license:expat)))
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
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From: Felix Gruber <liliana.prikler@HIDDEN>
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Date: Fri, 17 Mar 2023 19:19:18 +0000
Subject: [PATCH 07/19] gnu: Add python-pluggy-next.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/python-xyz.scm (python-pluggy-next): New variable.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@HIDDEN>
---
gnu/packages/python-xyz.scm | 13 +++++++++++++
1 file changed, 13 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index fc54d07214..557482b612 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -15426,6 +15426,19 @@ (define-public python-pluggy
(home-page "https://pypi.org/project/pluggy/")
(license license:expat)))
+;;; TODO: Make this the default python-pluggy in the next rebuild cycle.
+(define-public python-pluggy-next
+ (package
+ (inherit python-pluggy)
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pluggy" version))
+ (sha256
+ (base32
+ "0n8iadlas2z1b4h0fc73b043c7iwfvx9rgvqm1azjmffmhxkf922"))))))
+
(define-public python-plumbum
(package
(name "python-plumbum")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 09:43:29 +0100
Subject: [PATCH 15/19] gnu: python-aiosqlite: Update to 0.18.0.
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* gnu/packages/databases.scm (python-aiosqlite): Update to 0.18.0.
[source]: Use git-fetch and git-reference.
[build-system]: Use pyproject-build-system.
[arguments]: Adjust accordingly.
[propagated-inputs]: Remove.
[native-inputs]: Remove python-aiounittest.
Add python-flit-core, python-coverage and python-mypy.
---
gnu/packages/databases.scm | 41 +++++++++++++++++++-------------------
1 file changed, 21 insertions(+), 20 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 295d88e05a..6b693f940f 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -3627,27 +3627,28 @@ (define-public python-apsw
(define-public python-aiosqlite
(package
(name "python-aiosqlite")
- (version "0.17.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "aiosqlite" version))
- (sha256
- (base32
- "0lgfpbkcd730hbgj3zlrbx2y8fzvdns2zj3s4r4l31n49g1arrph"))))
- (build-system python-build-system)
+ (version "0.18.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/omnilib/aiosqlite")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1a8sggh1wwbpl46k5qcfmp97s9hjysna0x7mwwc53kyfm0m95wf8"))))
+ (build-system pyproject-build-system)
(arguments
- '(#:phases (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (if tests?
- (invoke "python" "-m" "unittest" "aiosqlite.tests")
- (format #t "test suite not run~%"))
- #t)))))
- (propagated-inputs
- (list python-typing-extensions))
- (native-inputs
- (list python-aiounittest))
+ (list #:phases #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (invoke "python" "-m" "coverage" "run" "-m"
+ "aiosqlite.tests")
+ (invoke "python" "-m" "coverage" "report")))))))
+ (native-inputs (list python-flit-core
+ python-coverage
+ python-mypy))
(home-page "https://github.com/jreese/aiosqlite")
(synopsis
"Asyncio bridge for sqlite3")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:34:31 +0100
Subject: [PATCH 06/19] gnu: python-pathspec: Revise description.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/python-xyz.scm (python-pathspec)[synopsis, description]:
Rewrite to better explain what it does.
---
gnu/packages/python-xyz.scm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 41803361e2..fc54d07214 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5994,10 +5994,11 @@ (define-public python-pathspec
"1g7b60ds4mwm4vyff7c5n4d3ynasgf8fc893g70r2kliw3a3ilv4"))))
(build-system python-build-system)
(home-page "https://github.com/cpburnz/python-path-specification")
- (synopsis "Utility library for gitignore style pattern matching of file paths")
+ (synopsis "Match file names against specifications")
(description
- "This package provides a utility library for gitignore style pattern
-matching of file paths.")
+ "This package provides a utility library to match file names against
+specified patterns. It is currently limited to wildmatch-style patterns,
+which are used e.g. in .gitignore files.")
(license license:mpl2.0)))
(define-public python-black
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:34:09 +0100
Subject: [PATCH 05/19] gnu: python-pathspec: Update to 0.11.0.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/python-xyz.scm (python-pathspec): Update to 0.11.0.
---
gnu/packages/python-xyz.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 629789cfa5..41803361e2 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5984,14 +5984,14 @@ (define-public python-language-server
(define-public python-pathspec
(package
(name "python-pathspec")
- (version "0.9.0")
+ (version "0.11.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pathspec" version))
(sha256
(base32
- "1cdbdb3s6ldnjpwbi0bgl0xlmw4mbfxk08bbdxc3srx26na4jr75"))))
+ "1g7b60ds4mwm4vyff7c5n4d3ynasgf8fc893g70r2kliw3a3ilv4"))))
(build-system python-build-system)
(home-page "https://github.com/cpburnz/python-path-specification")
(synopsis "Utility library for gitignore style pattern matching of file paths")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 09:19:58 +0100
Subject: [PATCH 13/19] gnu: python-pymysql: Update to 1.0.2.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/databases.scm (python-pymysql): Update to 1.0.2.
---
gnu/packages/databases.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 7bfff9b71d..13d9f4aeae 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -1529,13 +1529,13 @@ (define-public pgloader
(define-public python-pymysql
(package
(name "python-pymysql")
- (version "0.9.3")
+ (version "1.0.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "PyMySQL" version))
(sha256
- (base32 "1ry8lxgdc1p3k7gbw20r405jqi5lvhi5wk83kxdbiv8xv3f5kh6q"))))
+ (base32 "0dmdszskfri11b9m6n3lag31vzi10aqxz9gc583md3gka2ijfsc1"))))
(build-system python-build-system)
(inputs
(list python-cryptography))
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 08:34:03 +0100
Subject: [PATCH 04/19] gnu: Add python-clingraph.
to: 62252 <at> debbugs.gnu.org
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* gnu/packages/potassco.scm (python-clingraph): New variable.
---
gnu/packages/potassco.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/potassco.scm b/gnu/packages/potassco.scm
index eea7e6cefa..02a12d9c77 100644
--- a/gnu/packages/potassco.scm
+++ b/gnu/packages/potassco.scm
@@ -30,6 +30,7 @@ (define-module (gnu packages potassco)
#:use-module (guix build-system python)
#:use-module (guix build-system pyproject)
#:use-module (gnu packages check)
+ #:use-module (gnu packages graphviz)
#:use-module (gnu packages libffi)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
@@ -295,3 +296,33 @@ (define-public python-telingo
(description "This package provides a system to solve dynamic temporal
logic programs based on clingo.")
(license license:expat)))
+
+(define-public python-clingraph
+ (package
+ (name "python-clingraph")
+ (version "1.1.0")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/potassco/clingraph")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0bdhli20nw9qnyxmpisgz7m97d7bwx6lbmxy9bgqvm6mipprnv3n"))))
+ (build-system pyproject-build-system)
+ (inputs (list dot2tex graphviz))
+ (propagated-inputs (list python-clingo
+ python-clorm
+ python-graphviz
+ python-imageio
+ python-jinja2
+ python-jsonschema
+ python-networkx))
+ (native-inputs (list dot2tex graphviz python-pylint python-pytest))
+ (home-page "https://github.com/potassco/clingraph")
+ (synopsis "Visualizer for graphs defined as logic programs")
+ (description
+ "This package provides a clingo-based visualizer for graphs defined
+as logic programs.")
+ (license license:expat)))
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 07:51:37 +0100
Subject: [PATCH 02/19] gnu: python-imageio: Update to 2.26.0.
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Content preview: * gnu/packages/python-xyz.scm (python-imageio): Update to
2.26.0. [build-system]: Use pyproject-build-system. [arguments]: Use
G-Expressions.
<#:tests?>: Drop argument. <#:test-flags>: New argument. < [...]
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* gnu/packages/python-xyz.scm (python-imageio): Update to 2.26.0.
[build-system]: Use pyproject-build-system.
[arguments]: Use G-Expressions.
<#:tests?>: Drop argument.
<#:test-flags>: New argument.
<#:phases>: Drop replacement for ‘check’.
Add ‘fix-source’ and ‘fix-failing-tests’.
[inputs]: Add freeimage.
[propagated-inputs]: Add python-imageio-ffmpeg.
---
gnu/packages/python-xyz.scm | 44 +++++++++++++++++++++++--------------
1 file changed, 28 insertions(+), 16 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 1633cec7a6..629789cfa5 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -8047,29 +8047,41 @@ (define-public python-imageio-ffmpeg
(define-public python-imageio
(package
(name "python-imageio")
- (version "2.8.0")
+ (version "2.26.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "imageio" version))
(sha256
(base32
- "1ksjl523fm0fikrd85llxfba35rc1qsgwadgr6mbn9kis79xcpzv"))))
- (build-system python-build-system)
+ "0dgddhi5dlpry5j4d3256v09pcziyj3ii47yx0zi68xprm11d7qn"))))
+ (build-system pyproject-build-system)
(arguments
- `(#:tests? #f ; many tests require online data
- #:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda* (#:key outputs inputs tests? #:allow-other-keys)
- (if tests?
- (begin
- ;; Make installed package available for running the tests.
- (add-installed-pythonpath inputs outputs)
- (invoke "pytest" "-vv"))
- #t))))))
- (propagated-inputs
- (list python-numpy python-pillow python-psutil))
+ (list
+ #:test-flags #~(list "-m" "not needs_internet")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'fix-source
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "imageio/plugins/_freeimage.py"
+ (("os\\.getenv\\(\"IMAGEIO_FREEIMAGE_LIB\".*\\)" all)
+ (string-append
+ "(" all " or \""
+ (search-input-file inputs "lib/libfreeimage.so")
+ "\")")))
+ (substitute* "imageio/core/util.py"
+ (("\"/var/tmp\"")
+ "os.getenv(\"TMPDIR\", \"/tmp\")"))))
+ (add-after 'unpack 'fix-failing-tests
+ (lambda _
+ (substitute* "tests/test_core.py"
+ (("(core\\.load_lib)\\((\\[gllib\\], \\[\\])\\)"
+ all fun args)
+ (string-append "raises(ValueError, " fun ", " args ")")))
+ (delete-file "tests/test_freeimage.py"))))))
+ (inputs (list freeimage))
+ (propagated-inputs
+ (list python-imageio-ffmpeg python-numpy python-pillow python-psutil))
(native-inputs
(list python-pytest))
(home-page "https://imageio.github.io/")
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
Full text available.
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From: Liliana Marie Prikler <liliana.prikler@HIDDEN>
Date: Sat, 18 Mar 2023 07:49:23 +0100
Subject: [PATCH 01/19] gnu: Add python-imageio-ffmpeg.
to: 62252 <at> debbugs.gnu.org
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Content preview: * gnu/packages/python-xyz.scm (python-imageio-ffmpeg): New
variable. --- gnu/packages/python-xyz.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+) diff --git a/gnu/packages/python-xyz.scm
b/gnu/packages/python-xyz.scm index 7c8b3b3378..1633cec7a6 100644 ---
a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm @@ -8015,6 +8015,35 @@ (d [...]
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* gnu/packages/python-xyz.scm (python-imageio-ffmpeg): New variable.
---
gnu/packages/python-xyz.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 7c8b3b3378..1633cec7a6 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -8015,6 +8015,35 @@ (define-public python-lfdfiles
experimental data and metadata at the Laboratory for Fluorescence Dynamics.")
(license license:bsd-3)))
+(define-public python-imageio-ffmpeg
+ (package
+ (name "python-imageio-ffmpeg")
+ (version "0.4.8")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "imageio-ffmpeg" version))
+ (sha256
+ (base32
+ "1a8as5c42s8yl79gc2nhj6vvkwr81p5ibxp5m1zhn1zy22nhbapx"))))
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'hardcode-ffmpeg
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "imageio_ffmpeg/_utils.py"
+ (("os\\.getenv\\(\"IMAGEIO_FFMPEG_EXE\".*\\)" all)
+ (string-append "(" all " or \""
+ (search-input-file inputs "bin/ffmpeg")
+ "\")"))))))))
+ (inputs (list ffmpeg-4))
+ (build-system python-build-system)
+ (home-page "https://github.com/imageio/imageio-ffmpeg")
+ (synopsis "FFMPEG wrapper for Python")
+ (description "This package provides an FFMPEG wrapper for working with video
+files. It implements generator functions for reading and writing data to and
+from FFMPEG, reliably terminating the process when done.")
+ (license license:bsd-2)))
+
(define-public python-imageio
(package
(name "python-imageio")
base-commit: 933051281fbed0ae71bd40c24a701faf2a02791c
prerequisite-patch-id: c3be9239b1cf8341b20835040d80e1c205474bdd
prerequisite-patch-id: ff86f1f4a060eb03f5c1a2ec78100a59ab0f00bf
prerequisite-patch-id: 2459d04db70b60050922b829fca25f141cc6e33d
prerequisite-patch-id: d2ebab26bf7d2336992acbca195cb4069c58937f
prerequisite-patch-id: fbec221e54078b13b19fe0f733dca8bcd14591ec
prerequisite-patch-id: 1747a765c51ee94c063ec10230aac856e6df22b4
--
2.39.2
guix-patches@HIDDEN:bug#62252; Package guix-patches.
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[85.127.52.93]) by smtp.gmail.com with ESMTPSA id r3-20020a50aac3000000b004fccef39ec9sm2110091edc.70.2023.03.18.02.28.29 for <guix-patches@HIDDEN> (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 18 Mar 2023 02:28:29 -0700 (PDT) From: Liliana Marie Prikler <liliana.prikler@HIDDEN> Date: Sat, 18 Mar 2023 10:24:18 +0100 Subject: [PATCH 00/19] Add python-clinguin MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit to: guix-patches@HIDDEN Message-ID: <291d52e688bb1d56ecd6561282fd9713bf237ed9.camel@HIDDEN> Received-SPF: pass client-ip=2a00:1450:4864:20::542; envelope-from=liliana.prikler@HIDDEN; helo=mail-ed1-x542.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -2.3 (--) Hi Guix, this series adds python-clinguin, a funny little package that allows you to write a GUI as an answer set program. It also updates a fair number of other package, including pulling in python-pluggy-next from <https://issues.guix.gnu.org/60838>. Cheers Felix Gruber (1): gnu: Add python-pluggy-next. Liliana Marie Prikler (18): gnu: Add python-imageio-ffmpeg. gnu: python-imageio: Update to 2.26.0. gnu: Separate potassco packages into their own module. gnu: Add python-clingraph. gnu: python-pathspec: Update to 0.11.0. gnu: python-pathspec: Revise description. gnu: python-pathspec: Move to (gnu packages python-build). gnu: python-pluggy: Move to (gnu packages python-build). gnu: Add python-hatchling. gnu: python-starlette: Update to 0.25.0. gnu: python-sqlalchemy: Update to 1.4.42. gnu: python-pymysql: Update to 1.0.2. gnu: python-aiomysql: Update to 0.1.1. gnu: python-aiosqlite: Update to 0.18.0. gnu: python-databases: Update to 0.7.0. gnu: python-databases: Revise description. gnu: Add python-fastapi. gnu: Add python-clinguin. gnu/local.mk | 1 + gnu/packages/databases.scm | 64 +++--- gnu/packages/maths.scm | 263 ------------------------ gnu/packages/potassco.scm | 375 ++++++++++++++++++++++++++++++++++ gnu/packages/python-build.scm | 99 +++++++++ gnu/packages/python-web.scm | 79 ++++++- gnu/packages/python-xyz.scm | 110 +++++----- 7 files changed, 638 insertions(+), 353 deletions(-) create mode 100644 gnu/packages/potassco.scm base-commit: 933051281fbed0ae71bd40c24a701faf2a02791c -- 2.39.2
Liliana Marie Prikler <liliana.prikler@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#62252; Package guix-patches.
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