GNU bug report logs - #63266
[PATCH] gnu: python-screed: Update to 1.1.2.

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Package: guix-patches;

Reported by: Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>

Date: Thu, 4 May 2023 14:29:02 UTC

Severity: normal

Tags: patch

Done: Ricardo Wurmus <rekado <at> elephly.net>

Bug is archived. No further changes may be made.

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Report forwarded to guix-patches <at> gnu.org:
bug#63266; Package guix-patches. (Thu, 04 May 2023 14:29:02 GMT) Full text and rfc822 format available.

Acknowledgement sent to Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>:
New bug report received and forwarded. Copy sent to guix-patches <at> gnu.org. (Thu, 04 May 2023 14:29:02 GMT) Full text and rfc822 format available.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: python-screed: Update to 1.1.2.
Date: Thu, 4 May 2023 16:28:17 +0200
* gnu/packages/bioinformatics.scm (python-screed): Update to 1.1.2.
[native-inputs]: Remove the unnecessary dependencies.
[inputs]: Remove the section.
[build-system]: Change to pyproject.
---
 gnu/packages/bioinformatics.scm | 12 +++++-------
 1 file changed, 5 insertions(+), 7 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 181e68b44b..75ea7b35d6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7628,19 +7628,17 @@ (define-public preseq
 (define-public python-screed
   (package
     (name "python-screed")
-    (version "1.0")
+    (version "1.1.2")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "screed" version))
        (sha256
-        (base32
-         "148vcb7w2wr6a4w6vs2bsxanbqibxfk490zbcbg4m61s8669zdjx"))))
-    (build-system python-build-system)
+        (base32 "0slva743xn93h4sl5zg2as4ricnnj5pp6nw9dm4qclk4i9xglkvk"))))
+    (build-system pyproject-build-system)
     (native-inputs
-     (list python-pytest python-pytest-cov python-pytest-runner))
-    (inputs
-     (list python-bz2file))
+     (list python-pytest-cov
+           python-pytest-runner))
     (home-page "https://github.com/dib-lab/screed/")
     (synopsis "Short read sequence database utilities")
     (description "Screed parses FASTA and FASTQ files and generates databases.

base-commit: fa685c87eaa9888a4278f39bb2b815673589dced
-- 
2.39.2





Reply sent to Ricardo Wurmus <rekado <at> elephly.net>:
You have taken responsibility. (Thu, 04 May 2023 17:36:02 GMT) Full text and rfc822 format available.

Notification sent to Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>:
bug acknowledged by developer. (Thu, 04 May 2023 17:36:02 GMT) Full text and rfc822 format available.

Message #10 received at 63266-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 63266-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: python-screed: Update to 1.1.2.
Date: Thu, 04 May 2023 19:34:45 +0200
Applied, thank you!

-- 
Ricardo




bug archived. Request was from Debbugs Internal Request <help-debbugs <at> gnu.org> to internal_control <at> debbugs.gnu.org. (Fri, 02 Jun 2023 11:24:08 GMT) Full text and rfc822 format available.

This bug report was last modified 300 days ago.

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