Received: (at 63273) by debbugs.gnu.org; 17 May 2023 14:07:39 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Wed May 17 10:07:39 2023 Received: from localhost ([127.0.0.1]:50549 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1pzHoZ-0002GS-LS for submit <at> debbugs.gnu.org; Wed, 17 May 2023 10:07:39 -0400 Received: from mail-pf1-f173.google.com ([209.85.210.173]:50678) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <kb@HIDDEN>) id 1pzHoX-0002GE-CJ for 63273 <at> debbugs.gnu.org; Wed, 17 May 2023 10:07:38 -0400 Received: by mail-pf1-f173.google.com with SMTP id d2e1a72fcca58-643ac91c51fso614789b3a.1 for <63273 <at> debbugs.gnu.org>; Wed, 17 May 2023 07:07:37 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=devnulllabs-io.20221208.gappssmtp.com; s=20221208; t=1684332451; x=1686924451; h=mime-version:message-id:date:subject:to:from:user-agent:from:to:cc :subject:date:message-id:reply-to; bh=1uhGZGpmNRnwFCYNxiWkVWwXpjEdOhNK1uzJZLGpsj4=; b=ApN2xyewnYi25N1heywzmbvJtWFCfqH6GnlewrxPbCynJTSPxpfHW7B/bD5dlD7zqF bjQqzjxUOCA6JWY7OpiKwMBk4nS6svkzLkSK2KHOxpS6DJ3UP0OwT/5KYupAwhKHTL1C r7nbtt9i7ppi4jAYWr78UZTg+oxD+d79lwvqgGly8VrCKfo03LIOqKG6gASb4QFmNZrC IrkfeRT5BVdVMovrgMerjREMu6CfoMuK2m98cFhqlHRiIP43oD7aGL+CQEOEgM8MLoUj ACYRzq5ZW0rSG107w49D88QQbtlWWa0K0PGSACTXyVXSRd9DFmWt0Cs+hsJHDxX84Ql4 CevA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20221208; t=1684332451; x=1686924451; h=mime-version:message-id:date:subject:to:from:user-agent :x-gm-message-state:from:to:cc:subject:date:message-id:reply-to; bh=1uhGZGpmNRnwFCYNxiWkVWwXpjEdOhNK1uzJZLGpsj4=; b=UTgYX1XLTwmGrVxdX6bthF4cy0AnFSffhPpMCy1/GLXEfwy67lHBJ9ZUZhZsjEMcKV 825uukP2EmT7e3RSufeSrugGNbGuWPCgNolsjWP2/RQleJFeSKKSB9BBfndAFZ4KbvNZ 8J0gxYC+yeJHJASqfkf17gNnvgagyzUOjRLdCbh9FwnvHydjnB0+Uj/tMCIDS3F7XSHC l9s+9EFfQDn7mkC1bVfRtqgU8f+Ca0kooU1MPsZgRp2Qc6PAeTBy0a2MCSWm1hceIlA0 nP9gq+wiv3RfFzRJHSme5VNhKnu/1z9QC19mXT5fnn4KLbktdMf9QN0VOPqWAhRIXPSq yOoQ== X-Gm-Message-State: AC+VfDw2GaSD/G8IFuYRmJGWKUHO+4VSgD+Bj0gImE5ht/w+JW/8Wnql Bb3Vn7ME3qn5GGfipuUANzhbNmje8Mm1JWS6IA8= X-Google-Smtp-Source: ACHHUZ6tRH95PzV3J7ws2dH3tXU+IAL3gXmyPKxCOzlwr0AfopKLPkMKE61w/XbpSLMk3DpSkGoEXg== X-Received: by 2002:a05:6a21:900c:b0:103:d538:5e94 with SMTP id tq12-20020a056a21900c00b00103d5385e94mr20712453pzb.12.1684332450886; Wed, 17 May 2023 07:07:30 -0700 (PDT) Received: from localhost (174-126-237-169.cpe.sparklight.net. [174.126.237.169]) by smtp.gmail.com with ESMTPSA id j23-20020aa783d7000000b0063b488f3305sm10509826pfn.155.2023.05.17.07.07.29 for <63273 <at> debbugs.gnu.org> (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 17 May 2023 07:07:30 -0700 (PDT) User-agent: mu4e 1.10.2; emacs 30.0.50 From: Kenny Ballou <kb@HIDDEN> To: 63273 <at> debbugs.gnu.org Subject: Re: guix home / glibc error: libpthread.so.0: undefined symbol Date: Wed, 17 May 2023 08:02:52 -0600 X-PGP-Key: https://kennyballou.com/932F3E8E1C0F4A9895D7B8B8B0CAA28A02958308.txt Message-ID: <87mt231274.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 63273 X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Hey Blake, I too was encountering this issue, but I resolved it by restarting the `guix-daemon` process before upgrading the system and again after upgrading the system and before doing a `home` reconfigure. I don't think it's related, but I also cleared out my guix substitute cache before everything worked again. I hope that helps. -Kenny
bug-guix@HIDDEN:bug#63273; Package guix.
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From: Blake Shaw <blake@HIDDEN>
To: bug-guix@HIDDEN
Subject: guix home / glibc error: libpthread.so.0: undefined symbol
Date: Thu, 04 May 2023 22:08:36 +0700
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Hi Guix,
I just upgraded to the full source bootstrap (my cron job was apparently
failing daily due to a channel, and I didn't realize before today), and
following the guix pull, I get the following error when running $ guix
home reconfiugre "file.scm":
```
/gnu/store/ad8351jvj61da279a3ddfs2gmk3whvdq-guile-wrapper/bin/guile: symbol lookup error: /gnu/store/5h2w4qi9hk1qzzgi1w83220ydslinr4s-glibc-2.33/lib/libpthread.so.0: undefined symbol: __libc_pthread_init, version GLIBC_PRIVATE
```
Here is my "guix describe":
```
Generation 70 May 04 2023 21:20:10 (current)
guix f0a51a2
repository URL: https://git.savannah.gnu.org/git/guix.git
branch: master
commit: f0a51a2bda26f9cc1e0b54b48712bd7cc54408e9
nonguix 9d58bb6
repository URL: https://gitlab.com/nonguix/nonguix
branch: master
commit: 9d58bb6e3e93a444d35bf62d4ca98a126ae4f295
rde e5bcfc0
repository URL: https://git.sr.ht/~abcdw/rde
branch: master
commit: e5bcfc0654bca23aba226a4e8f889ba682525734
```
Here is my guix system describe, in case its helpful:
```
Generation 201 Apr 09 2023 16:18:54 (current)
file name: /var/guix/profiles/system-201-link
canonical file name: /gnu/store/44qk4n0v5ig6w9w7896f7kidkpxajswh-system
label: GNU with Linux 5.15.106
bootloader: grub-efi
root device: /dev/mapper/cryptroot
kernel: /gnu/store/9iphrh7l2ys3ddj83xsydnykj0q797w6-linux-5.15.106/bzImage
channels:
guix:
repository URL: https://git.savannah.gnu.org/git/guix.git
branch: master
commit: b08cdfc6d363e9ca63118303b4628542c54a612d
nonguix:
repository URL: https://gitlab.com/nonguix/nonguix
branch: master
commit: 40c48d08cc8c7c82f3212f6695c641cb17ac5d60
rde:
repository URL: https://git.sr.ht/~abcdw/rde
branch: master
commit: 6cc378b905d11c5a393a61aea0809428d7071c5a
configuration file: /gnu/store/lm7nd9s9crffs177cfkj1m7asw88z3bj-configuration.scm
```
Rolling back fixes it, as anticipated.
Best,
Blake
Blake Shaw <blake@HIDDEN>:bug-guix@HIDDEN.
Full text available.bug-guix@HIDDEN:bug#63273; Package guix.
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