Received: (at 63619) by debbugs.gnu.org; 5 Jun 2023 13:02:05 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon Jun 05 09:02:05 2023 Received: from localhost ([127.0.0.1]:48425 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1q69qW-0004aA-Uw for submit <at> debbugs.gnu.org; Mon, 05 Jun 2023 09:02:05 -0400 Received: from eggs.gnu.org ([209.51.188.92]:55074) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <ludo@HIDDEN>) id 1q69qV-0004ZS-0A for 63619 <at> debbugs.gnu.org; Mon, 05 Jun 2023 09:02:03 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1q69qP-0008P4-OA; Mon, 05 Jun 2023 09:01:57 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:In-Reply-To:Date:References:Subject:To: From; bh=eQ9rw+Oawd3PIEBBxxWcpy04P2SDf8exqQq9S9nhYng=; b=L/DU4Gwx4noKkzpPmnsT 084fqTUw7jmxiJ2Y/R5/cvhLEbAfVwQdewJMTCVZIpSyNjdkm8Klg4sbaTi1M1CmJkz9CqLPLDECz J6LBGR5X2djKYCsSijpkuVy2j/eHGXauCFuIk3vxFYeAw5v7Dq8rArGw0+rSHCKHQlV5vVXTQsxpE gfccv3xvc8vP7DSZS+dYr2Lb5xeg8W/BAl1y/STgrGAQQKhisF8/6QxTR0pSCNguP/GAV4EtDFnxv /dqJucD9tU/G1iHjZvPR8+LKQnP/tD9jFpzq2Aa2jsU43pkUS42k8nyOP2M2EdG7TUarEzrCj96nN Nh/QqgXjSe/OBw==; Received: from [2001:660:6102:320:e120:2c8f:8909:cdfe] (helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1q69qP-0000Ej-9d; Mon, 05 Jun 2023 09:01:57 -0400 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN> To: Vinicius Monego <monego@HIDDEN> Subject: Re: bug#63619: [PATCH 0/9] Add PyMC. References: <20230520231058.960514-1-monego@HIDDEN> Date: Mon, 05 Jun 2023 15:01:55 +0200 In-Reply-To: <20230520231058.960514-1-monego@HIDDEN> (Vinicius Monego's message of "Sat, 20 May 2023 23:10:58 +0000") Message-ID: <87edmqhxks.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/28.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 63619 Cc: 63619 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) Vinicius Monego <monego@HIDDEN> skribis: > This patchset adds the PyMC probabilistic programming package. > > Vinicius Monego (9): > gnu: Add python-vega-datasets. > gnu: Add python-altair. > gnu: Add python-einops. > gnu: python-xarray: Update to 2023.5.0. > gnu: Add python-xarray-einstats. > gnu: Add python-arviz. > gnu: Add python-fastprogress. > gnu: Add python-pytensor. > gnu: Add python-pymc. Hi! From a quick glance it LGTM. <https://qa.guix.gnu.org/issue/63619> is still lagging behind though. Ludo=E2=80=99.
guix-patches@HIDDEN:bug#63619; Package guix-patches.
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From: Vinicius Monego <monego@HIDDEN>
To: 63619 <at> debbugs.gnu.org
Subject: [PATCH 9/9] gnu: Add python-pymc.
Date: Sat, 20 May 2023 23:12:41 +0000
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* gnu/packages/statistics.scm (python-pymc): New variable.
---
gnu/packages/statistics.scm | 40 +++++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index c39cf9c0ac..4aac3369ad 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2192,6 +2192,46 @@ (define-public python-arviz
comparison and diagnostics.")
(license license:asl2.0)))
+(define-public python-pymc
+ (package
+ (name "python-pymc")
+ (version "5.3.1")
+ (source (origin
+ (method git-fetch) ; no tests in PyPI
+ (uri (git-reference
+ (url "https://github.com/pymc-devs/pymc")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1295b0d1zgnpy2hgm0i9jhnnqgzkya7cwcyhq45fdrz65mi9b65h"))))
+ (build-system pyproject-build-system)
+ (arguments
+ ;; Tests are computationally intensive and around 130 tests out of ~2800
+ ;; fail due to a missing .cc file in PyTensor.
+ (list #:tests? #f
+ #:phases #~(modify-phases %standard-phases
+ (add-after 'unpack 'write-permissions
+ (lambda _
+ (setenv "HOME" "/tmp"))))))
+ (native-inputs (list python-pytest-cov))
+ (propagated-inputs (list python-arviz
+ python-cachetools
+ python-cloudpickle
+ python-fastprogress
+ python-numpy
+ python-pandas
+ python-pytensor
+ python-scipy
+ python-typing-extensions))
+ (home-page "https://github.com/pymc-devs/pymc")
+ (synopsis "Library for probabilistic programming in Python")
+ (description
+ "PyMC (formerly PyMC3) is a Python package for Bayesian
+statistical modeling focusing on advanced Markov chain Monte Carlo (MCMC) and
+variational inference (VI) algorithms.")
+ (license license:asl2.0)))
+
(define-public python-patsy
(package
(name "python-patsy")
--
2.34.1
guix-patches@HIDDEN:bug#63619; Package guix-patches.
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From: Vinicius Monego <monego@HIDDEN>
To: 63619 <at> debbugs.gnu.org
Subject: [PATCH 8/9] gnu: Add python-pytensor.
Date: Sat, 20 May 2023 23:12:40 +0000
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* gnu/packages/python-science.scm (python-pytensor): New variable.
---
gnu/packages/python-science.scm | 78 +++++++++++++++++++++++++++++++++
1 file changed, 78 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index d076c877fc..a419f4d023 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -754,6 +754,84 @@ (define-public python-xarray-einstats
functions and around einops with an API and features adapted to xarray.")
(license license:asl2.0)))
+(define-public python-pytensor
+ (package
+ (name "python-pytensor")
+ (version "2.11.3")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pymc-devs/pytensor")
+ (commit (string-append "rel-" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1qg38jv1244v5lzjgnb116jpz1gj8p3c5pjxr2nvkx7qpjwzxvk6"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:phases #~(modify-phases %standard-phases
+ (add-after 'unpack 'write-permissions
+ (lambda _
+ (setenv "HOME" "/tmp")))
+ (add-after 'unpack 'versioneer
+ (lambda _
+ ;; Our version of versioneer needs setup.cfg.
+ ;; This is adapted from pyproject.toml.
+ (with-output-to-file "setup.cfg"
+ (lambda ()
+ (display
+ "[versioneer]
+VCS = git
+style = pep440
+versionfile_source = pytensor/_version.py
+versionfile_build = pytensor/_version.py
+tag_prefix = rel-
+")))
+ (invoke "versioneer" "install")
+ (substitute* "setup.py"
+ (("versioneer.get_version\\(\\)")
+ (string-append "\""
+ #$version "\"")))))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ ;; Test discovery fails, have to call pytest by hand
+ ;; test_tensor_basic.py file requires JAX.
+ (invoke "python" "-m" "pytest" "-vv"
+ "--ignore"
+ "tests/link/jax/test_tensor_basic.py"
+ ;; Skip benchmark tests.
+ "-k"
+ (string-append "not test_elemwise_speed"
+ " and not test_logsumexp_benchmark"
+ " and not test_fused_elemwise_benchmark"
+ " and not test_scan_multiple_output"
+ " and not test_vector_taps_benchmark"
+ " and not test_cython_performance")
+ ;; Skip computationally intensive tests.
+ "--ignore" "tests/scan/"
+ "--ignore" "tests/tensor/"
+ "--ignore" "tests/sandbox/"
+ "--ignore" "tests/sparse/sandbox/")))))))
+ (native-inputs (list python-cython python-pytest python-versioneer))
+ (propagated-inputs (list python-cons
+ python-etuples
+ python-filelock
+ python-logical-unification
+ python-minikanren
+ python-numba
+ python-numpy
+ python-scipy
+ python-typing-extensions))
+ (home-page "https://pytensor.readthedocs.io/en/latest/")
+ (synopsis
+ "Library for mathematical expressions in multi-dimensional arrays")
+ (description
+ "PyTensor is a Python library that allows one to define,
+optimize, and efficiently evaluate mathematical expressions involving
+multi-dimensional arrays. It is a fork of the Aesara library.")
+ (license license:bsd-3)))
+
(define-public python-msgpack-numpy
(package
(name "python-msgpack-numpy")
--
2.34.1
guix-patches@HIDDEN:bug#63619; Package guix-patches.
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From: Vinicius Monego <monego@HIDDEN>
To: 63619 <at> debbugs.gnu.org
Subject: [PATCH 7/9] gnu: Add python-fastprogress.
Date: Sat, 20 May 2023 23:12:39 +0000
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* gnu/packages/python-xyz.scm (python-fastprogress): New variable.
---
gnu/packages/python-xyz.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f061fb4cfd..9ee45ab525 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -3002,6 +3002,32 @@ (define-public python-capturer
for additional processing.")
(license license:expat)))
+(define-public python-fastprogress
+ (package
+ (name "python-fastprogress")
+ (version "1.0.3")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/fastai/fastprogress")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "01h8f786wgmmd3fj98wk1n5id67nsp19gs8bbgims04aciwhvj21"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:tests? #f ;there are no tests
+ #:phases #~(modify-phases %standard-phases
+ ;; XXX: Fails with: "In procedure utime: No such file
+ ;; or directory".
+ (delete 'ensure-no-mtimes-pre-1980))))
+ (home-page "https://github.com/fastai/fastprogress")
+ (synopsis "Progress bar for Jupyter Notebook and console")
+ (description
+ "Fastprogress is a progress bar for Jupyter Notebook and console.")
+ (license license:asl2.0)))
+
(define-public python-case
(package
(name "python-case")
--
2.34.1
guix-patches@HIDDEN:bug#63619; Package guix-patches.
Full text available.
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From: Vinicius Monego <monego@HIDDEN>
To: 63619 <at> debbugs.gnu.org
Subject: [PATCH 6/9] gnu: Add python-arviz.
Date: Sat, 20 May 2023 23:12:38 +0000
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* gnu/packages/statistics.scm (python-arviz): New variable.
---
gnu/packages/statistics.scm | 41 +++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 574790731e..c39cf9c0ac 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2151,6 +2151,47 @@ (define-public python-hdmedians
machine learning, computer vision, and high-dimensional statistics.")
(license license:asl2.0)))
+(define-public python-arviz
+ (package
+ (name "python-arviz")
+ (version "0.15.1")
+ (source (origin
+ (method git-fetch) ; PyPI misses some test files
+ (uri (git-reference
+ (url "https://github.com/arviz-devs/arviz")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0nqr4v927r9kc50z7rwlk2m8nw3dnnmmwmwcfijzd93gbg53wc4f"))))
+ (build-system pyproject-build-system)
+ (arguments
+ ;; FIXME: matplotlib tests fail because of the "--save" test flag.
+ (list #:test-flags #~'("--ignore"
+ "arviz/tests/base_tests/test_plots_matplotlib.py")
+ #:phases #~(modify-phases %standard-phases
+ (add-before 'check 'write-permission
+ (lambda _
+ ;; 3 tests require write permission.
+ (setenv "HOME" "/tmp"))))))
+ (native-inputs (list python-cloudpickle python-pytest))
+ (propagated-inputs (list python-h5netcdf
+ python-matplotlib
+ python-numpy
+ python-packaging
+ python-pandas
+ python-scipy
+ python-typing-extensions
+ python-xarray
+ python-xarray-einstats))
+ (home-page "https://github.com/arviz-devs/arviz")
+ (synopsis "Exploratory analysis of Bayesian models")
+ (description
+ "ArviZ is a Python package for exploratory analysis of Bayesian models.
+It includes functions for posterior analysis, data storage, model checking,
+comparison and diagnostics.")
+ (license license:asl2.0)))
+
(define-public python-patsy
(package
(name "python-patsy")
--
2.34.1
guix-patches@HIDDEN:bug#63619; Package guix-patches.
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To: 63619 <at> debbugs.gnu.org
Subject: [PATCH 5/9] gnu: Add python-xarray-einstats.
Date: Sat, 20 May 2023 23:12:37 +0000
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* gnu/packages/python-science.scm (python-xarray-einstats): New variable.
---
gnu/packages/python-science.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 468da66a2b..d076c877fc 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -730,6 +730,30 @@ (define-public python-xarray
and visualization with these data structures.")
(license license:asl2.0)))
+(define-public python-xarray-einstats
+ (package
+ (name "python-xarray-einstats")
+ (version "0.5.1")
+ (source (origin
+ (method git-fetch) ; no tests in PyPI
+ (uri (git-reference
+ (url "https://github.com/arviz-devs/xarray-einstats")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1gg7p2lq7zxic64nbr6a8ynizs8rjzb29fnqib7hw3lmp13wsfm0"))))
+ (build-system pyproject-build-system)
+ (native-inputs (list python-einops python-flit-core python-numba
+ python-pytest))
+ (propagated-inputs (list python-numpy python-scipy python-xarray))
+ (home-page "https://einstats.python.arviz.org/en/latest/")
+ (synopsis "Stats, linear algebra and einops for xarray")
+ (description
+ "@code{xarray_einstats} provides wrappers around some NumPy and SciPy
+functions and around einops with an API and features adapted to xarray.")
+ (license license:asl2.0)))
+
(define-public python-msgpack-numpy
(package
(name "python-msgpack-numpy")
--
2.34.1
guix-patches@HIDDEN:bug#63619; Package guix-patches.
Full text available.
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From: Vinicius Monego <monego@HIDDEN>
To: 63619 <at> debbugs.gnu.org
Subject: [PATCH 4/9] gnu: python-xarray: Update to 2023.5.0.
Date: Sat, 20 May 2023 23:12:36 +0000
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* gnu/packages/python-science.scm (python-xarray): Update to 2023.5.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Don't override the check phase.
---
gnu/packages/python-science.scm | 14 ++++----------
1 file changed, 4 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 91c3904783..468da66a2b 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -9,7 +9,7 @@
;;; Copyright © 2019, 2021, 2022, 2023 Maxim Cournoyer <maxim.cournoyer@HIDDEN>
;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@HIDDEN>
;;; Copyright © 2020 Pierre Langlois <pierre.langlois@HIDDEN>
-;;; Copyright © 2020, 2021, 2022 Vinicius Monego <monego@HIDDEN>
+;;; Copyright © 2020, 2021, 2022, 2023 Vinicius Monego <monego@HIDDEN>
;;; Copyright © 2021 Greg Hogan <code@HIDDEN>
;;; Copyright © 2021 Roel Janssen <roel@HIDDEN>
;;; Copyright © 2021 Paul Garlick <pgarlick@HIDDEN>
@@ -706,24 +706,18 @@ (define-public python-einops
(define-public python-xarray
(package
(name "python-xarray")
- (version "0.15.1")
+ (version "2023.5.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "xarray" version))
(sha256
(base32
- "1yx8j66b7rn10m2l6gmn8yr9cn38pi5cj0x0wwpy4hdnhy6i7qv4"))))
- (build-system python-build-system)
+ "1s05ykxbhid8q0wbdns3kksdbbmxv47asmqwgp5wxfc284gnb2ii"))))
+ (build-system pyproject-build-system)
(native-inputs
(list python-setuptools-scm python-pytest))
(propagated-inputs
(list python-numpy python-pandas))
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda _
- (invoke "pytest"))))))
(home-page "https://github.com/pydata/xarray")
(synopsis "N-D labeled arrays and datasets")
(description "Xarray (formerly xray) makes working with labelled
--
2.34.1
guix-patches@HIDDEN:bug#63619; Package guix-patches.
Full text available.
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From: Vinicius Monego <monego@HIDDEN>
To: 63619 <at> debbugs.gnu.org
Subject: [PATCH 3/9] gnu: Add python-einops.
Date: Sat, 20 May 2023 23:12:35 +0000
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* gnu/packages/python-science.scm (python-einops): New variable.
---
gnu/packages/python-science.scm | 34 +++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 7d3319e367..91c3904783 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -669,6 +669,40 @@ (define-public python-geosketch
necessary for reproducing the experiments in the paper.")
(license license:expat)))
+(define-public python-einops
+ (package
+ (name "python-einops")
+ (version "0.6.1")
+ (source (origin
+ (method git-fetch) ;PyPI misses .ipynb files required for tests
+ (uri (git-reference
+ (url "https://github.com/arogozhnikov/einops")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1h8p39kd7ylg99mh620xr20hg7v78x1jnj6vxwk31rlw2dmv2dpr"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:phases #~(modify-phases %standard-phases
+ (add-after 'unpack 'set-backend
+ (lambda _
+ ;; Einops supports different backends, but we test
+ ;; only NumPy for availability and simplicity.
+ (setenv "EINOPS_TEST_BACKENDS" "numpy"))))))
+ (native-inputs (list jupyter
+ python-hatchling
+ python-nbconvert
+ python-nbformat
+ python-parameterized
+ python-pytest))
+ (propagated-inputs (list python-numpy))
+ (home-page "https://einops.rocks/")
+ (synopsis "Tensor operations for different backends")
+ (description "Einops provides a set of tensor operations for NumPy and
+multiple deep learning frameworks.")
+ (license license:expat)))
+
(define-public python-xarray
(package
(name "python-xarray")
--
2.34.1
guix-patches@HIDDEN:bug#63619; Package guix-patches.
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From: Vinicius Monego <monego@HIDDEN>
To: 63619 <at> debbugs.gnu.org
Subject: [PATCH 2/9] gnu: Add python-altair.
Date: Sat, 20 May 2023 23:12:34 +0000
Message-Id: <20230520231241.962799-2-monego@HIDDEN>
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* gnu/packages/statistics.scm (python-altair): New variable.
---
gnu/packages/statistics.scm | 39 +++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index d42c6baed6..574790731e 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -85,6 +85,7 @@ (define-module (gnu packages statistics)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
#:use-module (gnu packages python-science)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages readline)
@@ -2082,6 +2083,44 @@ (define-public python-vega-datasets
and Vega-Lite examples.")
(license license:expat)))
+(define-public python-altair
+ (package
+ (name "python-altair")
+ (version "5.0.0")
+ (source (origin
+ (method git-fetch) ; no tests in PyPI
+ (uri (git-reference
+ (url "https://github.com/altair-viz/altair")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "11j7v2s25xwz3qdjbbps3ma2dd68cr87vxn22x9fyfzgbs9pc7mx"))))
+ (build-system pyproject-build-system)
+ (arguments
+ ;; test_render_examples_to_chart opens an external connection.
+ ;; test_save_html introduces a circular dependency on altair-viewer.
+ (list #:test-flags #~(list "-k" (string-append
+ "not test_render_examples_to_chart"
+ " and not test_save_html"))))
+ (propagated-inputs (list python-jinja2
+ python-jsonschema
+ python-numpy
+ python-pandas
+ python-toolz
+ python-typing-extensions))
+ (native-inputs (list python-black
+ python-hatchling
+ python-ipython
+ python-m2r
+ python-pytest
+ python-vega-datasets))
+ (home-page "https://altair-viz.github.io/")
+ (synopsis "Declarative statistical visualization library for Python")
+ (description
+ "Vega-Altair is a declarative statistical visualization library for Python.")
+ (license license:expat)))
+
(define-public python-hdmedians
(package
(name "python-hdmedians")
--
2.34.1
guix-patches@HIDDEN:bug#63619; Package guix-patches.
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From: Vinicius Monego <monego@HIDDEN>
To: 63619 <at> debbugs.gnu.org
Subject: [PATCH 1/9] gnu: Add python-vega-datasets.
Date: Sat, 20 May 2023 23:12:33 +0000
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* gnu/packages/statistics.scm (python-vega-datasets): New variable.
---
gnu/packages/statistics.scm | 20 ++++++++++++++++++++
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 13232a00e3..d42c6baed6 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2062,6 +2062,26 @@ (define-public r-xtable
"This package provides tools to export R data as LaTeX and HTML tables.")
(license license:gpl2+)))
+(define-public python-vega-datasets
+ (package
+ (name "python-vega-datasets")
+ (version "0.9.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "vega_datasets" version))
+ (sha256
+ (base32
+ "1h1zv607mars2j73v8fdwihjh479blqxyw29nhmc73lf40s9iglx"))))
+ (build-system pyproject-build-system)
+ (arguments
+ `(#:tests? #f)) ; this is a data-only package, so no tests
+ (propagated-inputs (list python-pandas))
+ (home-page "https://github.com/altair-viz/vega_datasets")
+ (synopsis "Example datasets used by Vega-related projects")
+ (description "This package provides a collection of datasets used in Vega
+and Vega-Lite examples.")
+ (license license:expat)))
+
(define-public python-hdmedians
(package
(name "python-hdmedians")
--
2.34.1
guix-patches@HIDDEN:bug#63619; Package guix-patches.
Full text available.Received: (at submit) by debbugs.gnu.org; 20 May 2023 23:11:27 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Sat May 20 19:11:27 2023 Received: from localhost ([127.0.0.1]:59532 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1q0VjT-0000Su-7V for submit <at> debbugs.gnu.org; Sat, 20 May 2023 19:11:27 -0400 Received: from lists.gnu.org ([209.51.188.17]:47960) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <monego@HIDDEN>) id 1q0VjP-0000Sk-27 for submit <at> debbugs.gnu.org; Sat, 20 May 2023 19:11:26 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <monego@HIDDEN>) id 1q0VjN-0007MC-LZ for guix-patches@HIDDEN; Sat, 20 May 2023 19:11:21 -0400 Received: from mout01.posteo.de ([185.67.36.65]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <monego@HIDDEN>) id 1q0VjH-0002L3-RP for guix-patches@HIDDEN; Sat, 20 May 2023 19:11:19 -0400 Received: from submission (posteo.de [185.67.36.169]) by mout01.posteo.de (Postfix) with ESMTPS id 258A4240027 for <guix-patches@HIDDEN>; Sun, 21 May 2023 01:11:11 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=posteo.net; s=2017; t=1684624271; bh=weW35NSj+L/5CF4HtRJM/JwSNLETf3mjJx0khYaDdk4=; h=From:To:Cc:Subject:Date:Message-Id:MIME-Version: Content-Transfer-Encoding:From; b=IYEXFcMMr1rngM0rUE7jC+9kPHKe+478FVqumOyie13ZLm3UdQILZns0os6VoUxIZ q+IJ822YvnpDvmdwWQXYZUUlMwuHANEeKuLfCe0Dl12BbPIz4rWqEWv+TF80yS4oqT K7+K2/8tDBkngH9EmQ35nZTpVGrw2mjrOfQLMhPK+mzSCNZUCLApLydBB/HahSAY4G M20ZTAN1YgJPUW49//ea6npBz0CS9yZtAIqJKM9K6uqGR8n5e9oPCUyJpPZ2ycxBm+ hRvXf8I6gSzBC3mEgZa35aksziQwSUjOro2a5e+CGl9BsKHhuWDiifn8iq+Hndz0xA XRaZ5o5AjCK+Q== Received: from customer (localhost [127.0.0.1]) by submission (posteo.de) with ESMTPSA id 4QNzwX3Pktz9rxF; Sun, 21 May 2023 01:11:08 +0200 (CEST) From: Vinicius Monego <monego@HIDDEN> To: guix-patches@HIDDEN Subject: [PATCH 0/9] Add PyMC. Date: Sat, 20 May 2023 23:10:58 +0000 Message-Id: <20230520231058.960514-1-monego@HIDDEN> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=185.67.36.65; envelope-from=monego@HIDDEN; helo=mout01.posteo.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit Cc: Vinicius Monego <monego@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -2.3 (--) This patchset adds the PyMC probabilistic programming package. Vinicius Monego (9): gnu: Add python-vega-datasets. gnu: Add python-altair. gnu: Add python-einops. gnu: python-xarray: Update to 2023.5.0. gnu: Add python-xarray-einstats. gnu: Add python-arviz. gnu: Add python-fastprogress. gnu: Add python-pytensor. gnu: Add python-pymc. gnu/packages/python-science.scm | 150 +++++++++++++++++++++++++++++--- gnu/packages/python-xyz.scm | 26 ++++++ gnu/packages/statistics.scm | 140 +++++++++++++++++++++++++++++ 3 files changed, 306 insertions(+), 10 deletions(-) -- 2.34.1
Vinicius Monego <monego@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#63619; Package guix-patches.
Full text available.
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