GNU bug report logs - #63623
[PATCH 0/4] Add MetPy.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 0/4] Add MetPy.
Date: Sun, 21 May 2023 05:35:42 +0000

Vinicius Monego (4):
  gnu: python-sparse: Fix build.
  gnu: python-sparse: Update to 0.14.0.
  gnu: python-pint: Fix build.
  gnu: Add python-metpy.

 gnu/packages/geo.scm        | 51 +++++++++++++++++++++++++++++++++++++
 gnu/packages/python-xyz.scm | 22 +++++++++-------
 2 files changed, 64 insertions(+), 9 deletions(-)

-- 
2.34.1

Message #8 received at 63623 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 63623 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 1/4] gnu: python-sparse: Fix build.
Date: Sun, 21 May 2023 05:37:23 +0000

* gnu/packages/python-xyz.scm (python-sparse)[native-inputs]: Add
python-importlib-metadata.
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index c7a31e40a1..9fbae71a6c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -7036,8 +7036,8 @@ (define-public python-sparse
     (propagated-inputs
      (list python-numba python-numpy python-scipy))
     (native-inputs
-     (list python-dask python-pytest python-pytest-black
-           python-pytest-cov))
+     (list python-dask python-importlib-metadata python-pytest
+           python-pytest-black python-pytest-cov))
     (home-page "https://github.com/pydata/sparse/")
     (synopsis "Library for multi-dimensional sparse arrays")
     (description
-- 
2.34.1

Message #11 received at 63623 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 63623 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 2/4] gnu: python-sparse: Update to 0.14.0.
Date: Sun, 21 May 2023 05:37:24 +0000

* gnu/packages/python-xyz.scm (python-sparse): Update to 0.14.0.
---
 gnu/packages/python-xyz.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 9fbae71a6c..3788cefda2 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -7017,14 +7017,14 @@ (define-public python-colormath
 (define-public python-sparse
   (package
     (name "python-sparse")
-    (version "0.13.0")
+    (version "0.14.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "sparse" version))
        (sha256
         (base32
-         "05ar1lhq1yy4nb78s7vpb1wz4ac4kj0r4lrd7yrf23kpmaacjpb8"))))
+         "1600xad37mff46xg80cy6bi3l2n6jm69j7sl19rzdmkcgyijfn2z"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
-- 
2.34.1

Message #14 received at 63623 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 63623 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 3/4] gnu: python-pint: Fix build.
Date: Sun, 21 May 2023 05:37:25 +0000

* gnu/packages/python-xyz (python-pint)[build-system]: Switch to
pyproject-build-system.
[arguments]: Skip a failing test.
[native-inputs]: Sort alphabetically and add python-importlib-metadata.
---
 gnu/packages/python-xyz.scm | 14 +++++++++-----
 1 file changed, 9 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 3788cefda2..3dba197a94 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1066,17 +1066,21 @@ (define-public python-pint
               (sha256
                (base32
                 "0rv0cbala7ibjbaf6kkcn0mdhqdbajnvlcw0f15gwzfwg10g0z1q"))))
-    (build-system python-build-system)
+    (build-system pyproject-build-system)
+    (arguments
+     ;; This single test tries to write to $HOME/.cache/pint.
+     (list #:test-flags #~'("-k" "not test_auto")))
     (native-inputs
-     (list python-pytest                ;for pytest-subtests
+     (list python-dask
+           python-distributed
+           python-importlib-metadata
+           python-pytest                ;for pytest-subtests
            python-pytest-cov
            python-pytest-mpl
            python-pytest-subtests
            python-setuptools-scm
            python-sparse
-           python-dask
-           python-xarray
-           python-distributed))
+           python-xarray))
     (home-page "https://github.com/hgrecco/pint")
     (synopsis "Physical quantities module")
     (description
-- 
2.34.1

Message #17 received at 63623 <at> debbugs.gnu.org (full text, mbox):

From: Vinicius Monego <monego <at> posteo.net>
To: 63623 <at> debbugs.gnu.org
Cc: Vinicius Monego <monego <at> posteo.net>
Subject: [PATCH 4/4] gnu: Add python-metpy.
Date: Sun, 21 May 2023 05:37:26 +0000

* gnu/packages/geo.scm (python-metpy): New variable.
---
 gnu/packages/geo.scm | 51 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 51 insertions(+)

diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 345f9dfcf5..df898e462a 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -1483,6 +1483,57 @@ (define-public imposm3
                license:bsd-2
                license:bsd-3))))
 
+(define-public python-metpy
+  (package
+    (name "python-metpy")
+    (version "1.5.0")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "MetPy" version))
+              (sha256
+               (base32
+                "0g9m8qb920mvi0kqw7vbagj08xvv96zj6gjyc7dawlvh15vb55qq"))))
+    (build-system pyproject-build-system)
+    (arguments
+     ;; Too many of the tests in the files below require online data.
+     (list
+      #:test-flags
+      #~(list "--ignore" "tests/io/test_nexrad.py"
+              "--ignore" "tests/plots/test_declarative.py"
+              "--ignore" "tests/io/test_gempak.py"
+              "--ignore" "tests/io/test_gini.py"
+              "--ignore" "tests/io/test_metar.py"
+              "--ignore" "tests/io/test_station_data.py"
+              "--ignore" "tests/interpolate/test_grid.py"
+              "--ignore" "tests/interpolate/test_points.py"
+              "--ignore" "tests/test_xarray.py"
+              "--ignore" "tests/calc/test_indices.py"
+              "--ignore" "tests/calc/test_kinematics.py"
+              "-k" (string-append       ; more tests that require online data
+                    "not test_parse_grid_arguments_xarray"
+                    " and not test_absolute_momentum_xarray_units_attr"
+                    " and not test_zoom_xarray"
+                    " and not test_parse_wpc_surface_bulletin"
+                    " and not test_add_timestamp_xarray"
+                    " and not test_parse_wpc_surface_bulletin_highres"))))
+    (propagated-inputs (list python-importlib-resources
+                             python-matplotlib
+                             python-numpy
+                             python-pandas
+                             python-pint
+                             python-pooch
+                             python-pyproj
+                             python-scipy
+                             python-traitlets
+                             python-xarray))
+    (native-inputs (list python-cartopy python-netcdf4 python-pytest
+                         python-pytest-mpl python-shapely))
+    (home-page "https://github.com/Unidata/MetPy")
+    (synopsis "Collection of tools to deal with weather data")
+    (description "MetPy is a collection of tools in Python for reading,
+visualizing and performing calculations with weather data.")
+    (license license:bsd-3)))
+
 (define-public libosmium
   (package
     (name "libosmium")
-- 
2.34.1

Message #22 received at 63623-done <at> debbugs.gnu.org (full text, mbox):

From: Maxim Cournoyer <maxim.cournoyer <at> gmail.com>
To: Vinicius Monego <monego <at> posteo.net>
Cc: 63623-done <at> debbugs.gnu.org
Subject: Re: bug#63623: [PATCH 0/4] Add MetPy.
Date: Sun, 03 Sep 2023 23:22:04 -0400

Hi,

Vinicius Monego <monego <at> posteo.net> writes:

> Vinicius Monego (4):
>   gnu: python-sparse: Fix build.
>   gnu: python-sparse: Update to 0.14.0.
>   gnu: python-pint: Fix build.
>   gnu: Add python-metpy.

Installed :-).

-- 
Thanks,
Maxim

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