GNU bug report logs -
#65499
[PATCH 1/2] gnu: Add r-bumpymatrix.
Previous Next
To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 65499 in the body.
You can then email your comments to 65499 AT debbugs.gnu.org in the normal way.
Toggle the display of automated, internal messages from the tracker.
Report forwarded
to
guix-patches <at> gnu.org
:
bug#65499
; Package
guix-patches
.
(Thu, 24 Aug 2023 13:29:02 GMT)
Full text and
rfc822 format available.
Acknowledgement sent
to
Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
guix-patches <at> gnu.org
.
(Thu, 24 Aug 2023 13:29:02 GMT)
Full text and
rfc822 format available.
Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioconductor.scm (r-bumpymatrix): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 74071900a3..6204173277 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12913,6 +12913,33 @@ (define-public r-siggenes
Bayes Analyses of Microarrays} (EBAM).")
(license license:lgpl2.0+)))
+(define-public r-bumpymatrix
+ (package
+ (name "r-bumpymatrix")
+ (version "1.8.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BumpyMatrix" version))
+ (sha256
+ (base32
+ "021xn5d08phmwv6g8a5d4ap5kcf5syhm6vpr784l4k54lflssr5i"))))
+ (properties `((upstream-name . "BumpyMatrix")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-iranges r-matrix r-s4vectors))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/BumpyMatrix")
+ (synopsis "Bumpy matrix of non-scalar objects")
+ (description
+ "
+@code{BumpyMatrix} class and subclasses for storing non-scalar objects in matrix entries.
+This is akin to a ragged array but the raggedness is in the third dimension,
+much like a bumpy surface - hence the name. Of particular interest is the
+@code{BumpyDataFrameMatrix,} where each entry is a Bioconductor data frame.
+This allows us to naturally represent multivariate data in a format that is
+compatible with two-dimensional containers like the @code{SummarizedExperiment}
+and @code{MultiAssayExperiment} objects.")
+ (license license:expat)))
+
(define-public r-bumphunter
(package
(name "r-bumphunter")
base-commit: 39fa1ef033fda82cb1d122e0d1675b51acb1db34
--
2.34.1
Reply sent
to
Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Mon, 28 Aug 2023 08:22:02 GMT)
Full text and
rfc822 format available.
Notification sent
to
Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Mon, 28 Aug 2023 08:22:02 GMT)
Full text and
rfc822 format available.
Message #10 received at 65499-done <at> debbugs.gnu.org (full text, mbox):
Applied with minor changes. Thanks!
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Mon, 25 Sep 2023 11:24:18 GMT)
Full text and
rfc822 format available.
This bug report was last modified 1 year and 267 days ago.
Previous Next
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997,2003 nCipher Corporation Ltd,
1994-97 Ian Jackson.