GNU bug report logs - #65530
[PATCH] gnu: r-classdiscovery: Update to 3.4.0.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: r-classdiscovery: Update to 3.4.0.
Date: Fri, 25 Aug 2023 11:15:51 +0000

* gnu/packages/cran.scm (r-classdiscovery): Update to 3.4.0.
---
 gnu/packages/cran.scm | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 43a9e11fea..9226805717 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -66,6 +66,7 @@ (define-module (gnu packages cran)
   #:use-module (gnu packages algebra)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
+  #:use-module (gnu packages bioconductor)
   #:use-module (gnu packages bioinformatics)
   #:use-module (gnu packages c)
   #:use-module (gnu packages compression)
@@ -1630,7 +1631,7 @@ (define-public r-classdiscovery
     (synopsis
      "Classes and methods for \"Class Discovery\" with microarrays or proteomics")
     (description
-     "This package defines classes for \"class discovery\" in OOMPA project.
+      "This package defines classes for \"class discovery\" in OOMPA project.
 Class discovery primarily consists of unsupervised clustering methods
 with attempts to assess their statistical significance.")
     (license license:asl2.0)))

base-commit: 1c916c167b7eb1f2f8af2cf621aa1512b00b1033
prerequisite-patch-id: ab9aad8c0ca60c38323f24b41dd3d5b1c3286e10
prerequisite-patch-id: c57cd1d51559f364cccdc54030deb28d7692bf48
prerequisite-patch-id: fbceb485e63c38a57a5c46288287479afe028191
-- 
2.34.1

Message #8 received at 65530 <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <65530 <at> debbugs.gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-classdiscovery.
Date: Mon, 28 Aug 2023 12:34:18 +0000

* gnu/packages/bioconductor.scm (r-classdiscovery): New variable.
---
 gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0e01f3115d..81fe723779 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13924,6 +13924,31 @@ (define-public r-enrichplot
 All the visualization methods are developed based on ggplot2 graphics.")
     (license license:artistic2.0)))
 
+;; This is a CRAN package, but it depends on Bioconductor packages and module.
+;; That is why we added it here!
+(define-public r-classdiscovery
+  (package
+    (name "r-classdiscovery")
+    (version "3.4.0")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "ClassDiscovery" version))
+              (sha256
+               (base32
+                "06l7jvpcdynij05hb0ka33zpg7xdyqyzfzx24s0bnlspp83yc62s"))))
+    (properties `((upstream-name . "ClassDiscovery")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-biobase r-cluster r-mclust r-oompabase
+                             r-oompadata))
+    (home-page "http://oompa.r-forge.r-project.org/")
+    (synopsis
+     "Classes and Methods for \"Class Discovery\" with Microarrays or Proteomics")
+    (description
+     "This package defines classes for \"class discovery\" in OOMPA project.
+Class discovery primarily consists of unsupervised clustering methods
+with attempts to assess their statistical significance.")
+    (license license:asl2.0)))
+
 (define-public r-clusterprofiler
   (package
     (name "r-clusterprofiler")

base-commit: 4a49a89b09d07d96f4d6ef3c0ca93801370f7b20
-- 
2.34.1

Message #13 received at 65530-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 65530-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: r-classdiscovery: Update to 3.4.0.
Date: Mon, 28 Aug 2023 17:10:54 +0200

Thanks for the corrected patch.  I’ve applied it.

-- 
Ricardo

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