GNU bug report logs - #65535
[PATCH 0/5] *** Patch for r-ggstatsplot plus its dependencies ***

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH 0/5] *** Patch for r-ggstatsplot plus its dependencies ***
Date: Fri, 25 Aug 2023 13:10:01 +0000

*** This patch includes r-ggstatsplot + its dependencies. Thank you for your review!***

Navid Afkhami (5):
  gnu: Add r-wrs2.
  gnu: Add r-statsexpressions.
  gnu: Add r-mc2d.
  gnu: Add r-ggstatsplot.
  gnu: Add r-correlation.

 gnu/packages/cran.scm | 154 ++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 154 insertions(+)


base-commit: 1c916c167b7eb1f2f8af2cf621aa1512b00b1033
prerequisite-patch-id: ab9aad8c0ca60c38323f24b41dd3d5b1c3286e10
prerequisite-patch-id: c57cd1d51559f364cccdc54030deb28d7692bf48
prerequisite-patch-id: fbceb485e63c38a57a5c46288287479afe028191
prerequisite-patch-id: c1337efaa4849347307f9818e4e81227b096fcc6
-- 
2.34.1

Message #8 received at 65535 <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <65535 <at> debbugs.gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH 1/5] gnu: Add r-wrs2.
Date: Fri, 25 Aug 2023 13:12:32 +0000

* gnu/packages/cran.scm (r-wrs2): New variable.
---
 gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 9226805717..667decab70 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -13269,6 +13269,30 @@ (define-public r-writexls
 contains or can be specified by the user.")
     (license license:gpl2+)))
 
+(define-public r-wrs2
+  (package
+    (name "r-wrs2")
+    (version "1.1-4")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "WRS2" version))
+              (sha256
+               (base32
+                "1838wy59cqd65s0bw6c24xcvx7zflypqcbgs35l9s2fj87vw2hdc"))))
+    (properties `((upstream-name . "WRS2")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-mass r-mc2d r-plyr r-reshape))
+    (native-inputs (list r-knitr))
+    (home-page "https://r-forge.r-project.org/projects/psychor/")
+    (synopsis "Collection of robust statistical methods")
+    (description
+     "R-wrs2 offers a range of strong stats methods from Wilcox WRS functions.
+It implements robust t-tests, both independent and dependent, robust ANOVA,
+including designs with between-within subjects, quantile ANOVA, robust
+correlation, robust mediation, and nonparametric ANCOVA models using
+robust location measures.")
+    (license license:gpl3)))
+
 (define-public r-biasedurn
   (package
     (name "r-biasedurn")
-- 
2.34.1

Message #11 received at 65535 <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <65535 <at> debbugs.gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH 2/5] gnu: Add r-statsexpressions.
Date: Fri, 25 Aug 2023 13:12:33 +0000

* gnu/packages/cran.scm (r-statsexpressions): New variable.
---
 gnu/packages/cran.scm | 44 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 667decab70..dd90da6826 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8113,6 +8113,50 @@ (define-public r-statip
 @end itemize")
     (license license:gpl3)))
 
+(define-public r-statsexpressions
+  (package
+    (name "r-statsexpressions")
+    (version "1.5.1")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "statsExpressions" version))
+              (sha256
+               (base32
+                "1lq4h3a8yr7wnmjkg2rgr8524vdpfacr73pv4wxj44dbg9yh8l3x"))))
+    (properties `((upstream-name . "statsExpressions")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-afex
+                             r-bayesfactor
+                             r-correlation
+                             r-datawizard
+                             r-dplyr
+                             r-effectsize
+                             r-glue
+                             r-insight
+                             r-magrittr
+                             r-parameters
+                             r-performance
+                             r-pmcmrplus
+                             r-purrr
+                             r-rlang
+                             r-tibble
+                             r-tidyr
+                             r-withr
+                             r-wrs2
+                             r-zeallot))
+    (native-inputs (list r-knitr))
+    (home-page "https://indrajeetpatil.github.io/statsExpressions/")
+    (synopsis "Dataframes and expressions with statistical details")
+    (description
+     "Tools for creating detailed dataframes for common statistical approaches and tests.
+These include parametric, nonparametric, robust, and Bayesian t-test,
+one-way ANOVA, correlation analyses, contingency table analyses, and
+meta-analyses.  The functions are pipe-friendly and provide a consistent
+syntax to work with tidy data.  These dataframes additionally contain
+expressions with statistical details, and can be used in graphing packages.
+This package also forms the statistical processing backend for ggstatsplot.")
+    (license license:gpl3)))
+
 (define-public r-stringdist
   (package
     (name "r-stringdist")
-- 
2.34.1

Message #14 received at 65535 <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <65535 <at> debbugs.gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH 4/5] gnu: Add r-ggstatsplot.
Date: Fri, 25 Aug 2023 13:12:35 +0000

* gnu/packages/cran.scm (r-ggstatsplot): New variable.
---
 gnu/packages/cran.scm | 43 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 43 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d9618a9d14..d928ac1030 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -744,6 +744,49 @@ (define-public r-ggfittext
      "Ggfittext is a ggplot2 extension for fitting text into boxes.")
     (license license:gpl2)))
 
+(define-public r-ggstatsplot
+  (package
+    (name "r-ggstatsplot")
+    (version "0.12.0")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "ggstatsplot" version))
+              (sha256
+               (base32
+                "17jxvzr4dlvsakrsvblxngg60jxh0c1a0i8phqqg63nbf79ng2lk"))))
+    (properties `((upstream-name . "ggstatsplot")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-correlation
+                             r-datawizard
+                             r-dplyr
+                             r-ggcorrplot
+                             r-ggplot2
+                             r-ggrepel
+                             r-ggside
+                             r-ggsignif
+                             r-glue
+                             r-insight
+                             r-paletteer
+                             r-parameters
+                             r-patchwork
+                             r-performance
+                             r-purrr
+                             r-rlang
+                             r-statsexpressions
+                             r-tidyr))
+    (native-inputs (list r-knitr))
+    (home-page "https://indrajeetpatil.github.io/ggstatsplot/")
+    (synopsis "Based plots with statistical details")
+    (description
+     "This package generates graphics with embedded details from statistical tests.
+Statistical tests included in the plots themselves.  It provides an easier
+syntax to generate information-rich plots for statistical analysis of
+continuous or categorical data.  Currently, it supports the most common
+types of statistical approaches and tests: parametric, nonparametric,
+robust, and Bayesian versions of t-test/ANOVA, correlation analyses,
+contingency table analysis, meta-analysis, and regression analyses.")
+    (license license:gpl3)))
+
 (define-public r-glmpca
   (package
     (name "r-glmpca")
-- 
2.34.1

Message #17 received at 65535 <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <65535 <at> debbugs.gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH 3/5] gnu: Add r-mc2d.
Date: Fri, 25 Aug 2023 13:12:34 +0000

* gnu/packages/cran.scm (r-mc2d): New variable.
---
 gnu/packages/cran.scm | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index dd90da6826..d9618a9d14 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -2997,6 +2997,26 @@ (define-public r-mclogit
 the group sizes are small.")
     (license license:gpl2)))
 
+(define-public r-mc2d
+  (package
+    (name "r-mc2d")
+    (version "0.2.0")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "mc2d" version))
+              (sha256
+               (base32
+                "07h2gvmdfqjydikxksbqhikihg46fv6xyn8vk5kyni6x75gp9abk"))))
+    (properties `((upstream-name . "mc2d")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-ggplot2 r-ggpubr r-mvtnorm))
+    (home-page "https://cran.r-project.org/package=mc2d")
+    (synopsis "Tools for two-dimensional monte-carlo simulations")
+    (description
+     "This is a framework for construction and analysis of 2D Monte-Carlo simulations.
+In addition, this package includes various distributions.")
+    (license license:gpl2+)))
+
 (define-public r-shadowtext
   (package
     (name "r-shadowtext")
-- 
2.34.1

Message #20 received at 65535 <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <65535 <at> debbugs.gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH 5/5] gnu: Add r-correlation.
Date: Fri, 25 Aug 2023 13:12:36 +0000

* gnu/packages/cran.scm (r-correlation): New variable.
---
 gnu/packages/cran.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d928ac1030..82d674dfb8 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -363,6 +363,29 @@ (define-public r-collections
 queues, stacks, deques, dicts and ordered dicts.")
     (license license:expat)))
 
+(define-public r-correlation
+  (package
+    (name "r-correlation")
+    (version "0.8.4")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "correlation" version))
+              (sha256
+               (base32
+                "07fz7wmvrcd6b023jhj3bsrvg4w6i7f1v99jslm0gj84vzmnqzbs"))))
+    (properties `((upstream-name . "correlation")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-bayestestr r-datawizard r-insight r-parameters))
+    (native-inputs (list r-knitr))
+    (home-page "https://easystats.github.io/correlation/")
+    (synopsis "Methods for Correlation Analysis")
+    (description
+     "This ia a lightweight package for computing different kinds of correlations.
+These correlations include partial correlations, Bayesian correlations, multilevel
+correlations, polychoric correlations, biweight correlations, distance correlations
+and more.")
+    (license license:gpl3)))
+
 (define-public r-cplm
   (package
     (name "r-cplm")
-- 
2.34.1

Message #25 received at 65535-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 65535-done <at> debbugs.gnu.org
Subject: [PATCH 0/5] *** Patch for r-ggstatsplot plus its dependencies ***
Date: Mon, 28 Aug 2023 10:40:34 +0200

Thanks for the patches!  I applied them all.  It seems that you
committed them in the wrong order, so I couldn’t just apply the patch
series as is.

I reordered the commits so that they build on top of each other.

-- 
Ricardo

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