GNU bug report logs - #65689
[PATCH 1/2] gnu: Add r-strawr.

Previous Next

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 65689 in the body.
You can then email your comments to 65689 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH 1/2] gnu: Add r-strawr.
Date: Fri, 1 Sep 2023 20:45:11 +0000

* gnu/packages/cran.scm (r-strawr): New variable.
---
 gnu/packages/cran.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 4ec6b802ff..adf2d4c32a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -8287,6 +8287,28 @@ (define-public r-statsexpressions
 for ggstatsplot.")
     (license license:gpl3)))
 
+(define-public r-strawr
+  (package
+    (name "r-strawr")
+    (version "0.0.91")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "strawr" version))
+              (sha256
+               (base32
+                "1nbcn20g3f3f5x9sscj3020n5h4iaphr70s90n2fz31vc4snzq2m"))))
+    (properties `((upstream-name . "strawr")))
+    (build-system r-build-system)
+    (inputs (list curl openssh openssl zlib))
+    (propagated-inputs (list r-rcpp))
+    (home-page "https://github.com/aidenlab/straw/tree/master/R")
+    (synopsis "Fast Implementation of Reading/Dump for .hic Files")
+    (description
+     "API for efficient .hic file data extraction with programmatic matrix access.
+It doesn't store the pointer data for all the matrices, only theone
+queried, and currently we are only supporting matrices.")
+    (license license:expat)))
+
 (define-public r-stringdist
   (package
     (name "r-stringdist")

base-commit: 7309da3ba64a191f074807275d8c5661a25c035c
prerequisite-patch-id: 70b98dde8ca4056fb8bd1b731716853ac2c9f0a1
-- 
2.34.1

Message #10 received at 65689-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 65689-done <at> debbugs.gnu.org
Subject: [PATCH 1/2] gnu: Add r-strawr.
Date: Sat, 02 Sep 2023 11:48:39 +0200

Applied with minor changes.  Thank you!

-- 
Ricardo

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.