GNU bug report logs - #65707
[PATCH] gnu: Add r-interactivedisplay.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-interactivedisplay.
Date: Sat, 2 Sep 2023 21:56:44 +0000

* gnu/packages/bioconductor.scm (r-interactivedisplay): New variable.
---
 gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0070d7777c..f2cb268069 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7734,6 +7734,44 @@ (define-public r-impute
 microarray data, using nearest neighbor averaging.")
     (license license:gpl2+)))
 
+(define-public r-interactivedisplay
+  (package
+    (name "r-interactivedisplay")
+    (version "1.38.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "interactiveDisplay" version))
+              (sha256
+               (base32
+                "1y9fdnpz1bagrwhyj8jikp2q5fd9y74j48l5z7f0s88v88sa7szl"))))
+    (properties `((upstream-name . "interactiveDisplay")))
+    (build-system r-build-system)
+    (propagated-inputs (list curl
+                             zlib
+                             r-annotationdbi
+                             r-biocgenerics
+                             r-biocmanager
+                             r-category
+                             r-dt
+                             r-ggplot2
+                             r-gridsvg
+                             r-interactivedisplaybase
+                             r-plyr
+                             r-rcolorbrewer
+                             r-reshape2
+                             r-shiny
+                             r-zlibbioc
+                             r-xml))
+    (native-inputs (list esbuild r-knitr))
+    (home-page "https://bioconductor.org/packages/interactiveDisplay")
+    (synopsis
+     "Package for enabling powerful shiny web displays of Bioconductor objects")
+    (description
+     "This package offers interactive Shiny displays for Bioconductor objects.
+In addition, this package empower users to develop engaging visualizations
+and interfaces for working with Bioconductor data.")
+    (license license:artistic2.0)))
+
 (define-public r-interactivedisplaybase
   (package
     (name "r-interactivedisplaybase")

base-commit: c72bc0bb71a7315241c174636f96faee46a6dfa8
prerequisite-patch-id: 70b98dde8ca4056fb8bd1b731716853ac2c9f0a1
prerequisite-patch-id: da79dfabf48a66d58c294d8a8a5e036808df44d3
prerequisite-patch-id: b1b6000ebee26b162e35b26bffc5b8a6fdf820d8
-- 
2.34.1

Message #8 received at 65707 <at> debbugs.gnu.org (full text, mbox):

From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <65707 <at> debbugs.gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-interactivedisplay.
Date: Tue, 12 Sep 2023 15:14:22 +0000

* gnu/packages/bioconductor.scm (r-interactivedisplay): New variable.
---
 gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c913232680..9c03366f8b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7734,6 +7734,50 @@ (define-public r-impute
 microarray data, using nearest neighbor averaging.")
     (license license:gpl2+)))
 
+(define-public r-interactivedisplay
+  (package
+    (name "r-interactivedisplay")
+    (version "1.38.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "interactiveDisplay" version))
+              (sha256
+               (base32
+                "1y9fdnpz1bagrwhyj8jikp2q5fd9y74j48l5z7f0s88v88sa7szl"))))
+    (properties `((upstream-name . "interactiveDisplay")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-annotationdbi
+                             r-biocgenerics
+                             r-biocmanager
+                             r-category
+                             r-dt
+                             r-ggplot2
+                             r-gridsvg
+                             r-interactivedisplaybase
+                             r-plyr
+                             r-rcolorbrewer
+                             r-reshape2
+                             r-shiny
+                             r-zlibbioc
+                             r-xml))
+    (native-inputs `(("esbuild" ,esbuild)
+                     ("r-knitr" ,r-knitr)
+("js-jquery-1.9.1"
+,(origin
+  (method url-fetch)
+   (uri "https://code.jquery.com/jquery-1.9.1.js")
+   (sha256
+    (base32
+     "0h4dk67yc9d0kadqxb6b33585f3x3559p6qmp70l00qwq030vn3v"))))))
+    (home-page "https://bioconductor.org/packages/interactiveDisplay")
+    (synopsis
+     "Package for enabling powerful shiny web displays of Bioconductor objects")
+    (description
+     "This package offers interactive Shiny displays for Bioconductor objects.
+In addition, this package empower users to develop engaging visualizations
+and interfaces for working with Bioconductor data.")
+    (license license:artistic2.0)))
+
 (define-public r-interactivedisplaybase
   (package
     (name "r-interactivedisplaybase")

base-commit: 45af7b89239d4bbdc145a5c9cc03356f31d5a20e
-- 
2.34.1

Message #13 received at 65707-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 65707-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-interactivedisplay.
Date: Fri, 15 Sep 2023 23:23:17 +0200

Thanks for the patch!

This needed a little more work to replace the bundled JavaScript.  You
can see the result in commit cda20190bccf9bd55c264b1084eab8b6499c15cc.

-- 
Ricardo

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