GNU bug report logs -
#65916
[PATCH] gnu: python-hicmatrix: Fix "'build': uncaught exception".
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Report forwarded
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rekado <at> elephly.net, guix-patches <at> gnu.org
:
bug#65916
; Package
guix-patches
.
(Wed, 13 Sep 2023 13:41:01 GMT)
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
New bug report received and forwarded. Copy sent to
rekado <at> elephly.net, guix-patches <at> gnu.org
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(Wed, 13 Sep 2023 13:41:01 GMT)
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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
* gnu/packages/bioinformatics.scm (python-hicmatrix): Add new phase
'fix-references that remove the * character from the name of the
requirements.
---
gnu/packages/bioinformatics.scm | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e24d70e569..06ff34e877 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -16228,7 +16228,11 @@ (define-public python-hicmatrix
(arguments
(list
#:phases
- '(modify-phases %standard-phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'fix-references
+ (lambda _
+ (substitute* "setup.py"
+ ((".\\*\"") ".0\""))))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
base-commit: 9996896dc252a02ba3b17473a685ce8957237546
--
2.41.0
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Ricardo Wurmus <rekado <at> elephly.net>
:
You have taken responsibility.
(Wed, 13 Sep 2023 20:23:02 GMT)
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Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de>
:
bug acknowledged by developer.
(Wed, 13 Sep 2023 20:23:02 GMT)
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Message #10 received at 65916-done <at> debbugs.gnu.org (full text, mbox):
Hi, thanks for the patch.
> * gnu/packages/bioinformatics.scm (python-hicmatrix): Add new phase
> 'fix-references that remove the * character from the name of the
> requirements.
> ---
> gnu/packages/bioinformatics.scm | 6 +++++-
> 1 file changed, 5 insertions(+), 1 deletion(-)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index e24d70e569..06ff34e877 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -16228,7 +16228,11 @@ (define-public python-hicmatrix
> (arguments
> (list
> #:phases
> - '(modify-phases %standard-phases
> + #~(modify-phases %standard-phases
> + (add-after 'unpack 'fix-references
> + (lambda _
> + (substitute* "setup.py"
> + ((".\\*\"") ".0\""))))
I simplified this to remove the “.0”, renamed the phase because it isn’t
about fixing references, and removed the gexp.
--
Ricardo
bug archived.
Request was from
Debbugs Internal Request <help-debbugs <at> gnu.org>
to
internal_control <at> debbugs.gnu.org
.
(Thu, 12 Oct 2023 11:24:07 GMT)
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This bug report was last modified 1 year and 237 days ago.
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