GNU bug report logs - #68561
Guix wrongfully claims there is no space left

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Package: guix; Reported by: Lars Rustand <rustand.lars@HIDDEN>; dated Thu, 18 Jan 2024 08:37:02 UTC; Maintainer for guix is bug-guix@HIDDEN.

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From: Lars Rustand <rustand.lars@HIDDEN>
To: 68561 <at> debbugs.gnu.org
Subject: Re: bug#68561: Guix wrongfully claims there is no space left
Date: Fri, 19 Jan 2024 12:03:07 +0100
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Christopher Baines <mail@HIDDEN> writes:
> Check df -i, it could be that some filesystem has run out of inodes.

Thanks, this was the case. To recover a useful amount of inodes I had to
delete almost all previous generations. I first tried to delete
generations older than one month with `guix gc -d 1m`, but this had
little effect. Even doing `guix gc -d 1w` only recovered about 50%
inodes.

This lead me to question what was using so many inodes, and by running
`{ find / -xdev -printf '%h\n' | sort | uniq -c | sort -k 1 -n; } 2>/dev/null`
I found out that papirus-icon-theme is using an insane amount of
inodes. The below output shows all the inodes created by *one* profile
generation:

   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/ePapirus/48x48@2x/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/ePapirus/48x48@2x/categories
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/ePapirus/48x48/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/ePapirus/48x48/categories
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/ePapirus/96x96/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/ePapirus-Dark/48x48@2x/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/ePapirus-Dark/48x48@2x/categories
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/ePapirus-Dark/48x48/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/ePapirus-Dark/48x48/categories
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/ePapirus-Dark/96x96/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus/48x48@2x/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus/48x48@2x/categories
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus/48x48/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus/48x48/categories
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus/96x96/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus-Dark/48x48@2x/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus-Dark/48x48@2x/categories
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus-Dark/48x48/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus-Dark/48x48/categories
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus-Dark/96x96/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus-Light/48x48@2x/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus-Light/48x48@2x/categories
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus-Light/48x48/apps
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus-Light/48x48/categories
   8438 /gnu/store/d8mq08hz1hkjkr4jib5wjhrbmxxqc28s-profile/share/icons/Papirus-Light/96x96/apps

This gives a total of over 210,000 inodes used per profile generation.

I have the Papirus theme installed as part of my home configuration
which is under constant change, so it is often rebuilt many times per
day. I had to use `guix gc -d 1d` to get back a reasonable amount of
inodes.

This package seems to be impossible to keep in any profile that is
regenerated often, which is a shame. I was going to use it as a part of
my "desktop experience", and I really like to have my whole user
environment contained within the home config to make everything as
reproducible and simple to install on other machines as possible. Having
it manually installed in the default profile would stop it from eating
up unnecessary inodes, but at the expense of introducing it as an
external dependency to my home config, which is suboptimal.




Information forwarded to bug-guix@HIDDEN:
bug#68561; Package guix. Full text available.

Message received at 68561 <at> debbugs.gnu.org:


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From: Christopher Baines <mail@HIDDEN>
To: Lars Rustand <rustand.lars@HIDDEN>
Subject: Re: bug#68561: Guix wrongfully claims there is no space left
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Lars Rustand <rustand.lars@HIDDEN> writes:

> Guix is claiming that there is no space left on the device when none of
> my devices are in fact full. As you can see from the output of df -h
> there is more than enough space on all filesystems:
>
>
> Filesystem      Size  Used Avail Use% Mounted on
> none            7.8G     0  7.8G   0% /dev
> /dev/nvme0n1p7  250G  159G   79G  67% /
> /dev/nvme0n1p1  2.0G  428K  2.0G   1% /boot/efi
> tmpfs           7.8G  281M  7.5G   4% /dev/shm
> efivarfs        184K  137K   43K  77% /sys/firmware/efi/efivars
> none            7.8G   24K  7.8G   1% /run/systemd
> none            7.8G     0  7.8G   0% /run/user
> tmpfs           1.6G  8.0K  1.6G   1% /run/user/1000

Check df -i, it could be that some filesystem has run out of inodes.

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Information forwarded to bug-guix@HIDDEN:
bug#68561; Package guix. Full text available.

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From: Lars Rustand <rustand.lars@HIDDEN>
To: bug-guix@HIDDEN
Subject: Guix wrongfully claims there is no space left
Date: Thu, 18 Jan 2024 09:30:37 +0100
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Guix is claiming that there is no space left on the device when none of
my devices are in fact full. As you can see from the output of df -h
there is more than enough space on all filesystems:


Filesystem      Size  Used Avail Use% Mounted on
none            7.8G     0  7.8G   0% /dev
/dev/nvme0n1p7  250G  159G   79G  67% /
/dev/nvme0n1p1  2.0G  428K  2.0G   1% /boot/efi
tmpfs           7.8G  281M  7.5G   4% /dev/shm
efivarfs        184K  137K   43K  77% /sys/firmware/efi/efivars
none            7.8G   24K  7.8G   1% /run/systemd
none            7.8G     0  7.8G   0% /run/user
tmpfs           1.6G  8.0K  1.6G   1% /run/user/1000


This is the build output from Guix when trying to reconfigure my home:


warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-cuda-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-cuda-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-cuda-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-va-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-va-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-va-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-bad-audio-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-bad-audio-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-bad-audio-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-insertbin-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-insertbin-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-insertbin-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-transcoder-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-transcoder-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-transcoder-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-player-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-player-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-player-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-sctp-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-sctp-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-sctp-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-webrtc-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-webrtc-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-webrtc-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-photography-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-photography-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-photography-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-codecparsers-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-codecparsers-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-codecparsers-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-plugins-bad-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-plugins-bad-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-plugins-bad-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-mpegts-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-mpegts-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-mpegts-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/pk=
gconfig/gstreamer-play-1.0.pc
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/pkgconfig/gstreamer-play-1.0.pc
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/pkgconfig/gstreamer-play-1.0.pc

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/li=
bgstcuda-1.0.so
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/libgstcuda-1.0.so
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/libgstcuda-1.0.so

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/li=
bgstcuda-1.0.so.0.2202.0
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/libgstcuda-1.0.so.0.2202.0
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/libgstcuda-1.0.so.0.2202.0

warning: collision encountered:
  /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-bad-1.22.2/lib/li=
bgstcuda-1.0.so.0
  /gnu/store/yphrrwp56dba70p5y0bjj53r0krlpsd5-gst-plugins-bad-minimal-1.22.=
2/lib/libgstcuda-1.0.so.0
warning: choosing /gnu/store/wjfh1v15yyv1wka7qin62xb0s7m467nd-gst-plugins-b=
ad-1.22.2/lib/libgstcuda-1.0.so.0
Backtrace:
           8 (primitive-load "/gnu/store/pxzi0z14dn4wciazml3pdg46216=E2=80=
=A6")
In guix/build/profiles.scm:
    200:4  7 (build-profile "/gnu/store/c29rkqijl03v6kab16mfjszgaqf=E2=80=
=A6" =E2=80=A6)
In unknown file:
           6 (hash-for-each #<procedure 7ffff778ae80 at guix/build/=E2=80=
=A6> =E2=80=A6)
           5 (hash-for-each #<procedure 7ffff30c3240 at guix/build/=E2=80=
=A6> =E2=80=A6)
           4 (hash-for-each #<procedure 7ffff2931ac0 at guix/build/=E2=80=
=A6> =E2=80=A6)
           3 (hash-for-each #<procedure 7ffff282c4c0 at guix/build/=E2=80=
=A6> =E2=80=A6)
           2 (hash-for-each #<procedure 7ffff284be40 at guix/build/=E2=80=
=A6> =E2=80=A6)
           1 (hash-for-each #<procedure 7ffff778ae40 at guix/build/=E2=80=
=A6> =E2=80=A6)
           0 (symlink "/gnu/store/ws1a1w74g9iq8774dlw2wl1dbnw6wck8-=E2=80=
=A6" =E2=80=A6)

ERROR: In procedure symlink:
In procedure symlink: No space left on device





Acknowledgement sent to Lars Rustand <rustand.lars@HIDDEN>:
New bug report received and forwarded. Copy sent to bug-guix@HIDDEN. Full text available.
Report forwarded to bug-guix@HIDDEN:
bug#68561; Package guix. Full text available.
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