X-Loop: help-debbugs@HIDDEN Subject: [bug#69736] [PATCH 0/7] Add toil Resent-From: Arun Isaac <arunisaac@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: guix-patches@HIDDEN Resent-Date: Mon, 11 Mar 2024 18:13:02 +0000 Resent-Message-ID: <handler.69736.B.17101807443586 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: report 69736 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69736 <at> debbugs.gnu.org Cc: Arun Isaac <arunisaac@HIDDEN> X-Debbugs-Original-To: guix-patches@HIDDEN Received: via spool by submit <at> debbugs.gnu.org id=B.17101807443586 (code B ref -1); Mon, 11 Mar 2024 18:13:02 +0000 Received: (at submit) by debbugs.gnu.org; 11 Mar 2024 18:12:24 +0000 Received: from localhost ([127.0.0.1]:41237 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1rjk8N-0000vm-KL for submit <at> debbugs.gnu.org; Mon, 11 Mar 2024 14:12:23 -0400 Received: from lists.gnu.org ([209.51.188.17]:54492) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <arunisaac@HIDDEN>) id 1rjk8L-0000vd-HP for submit <at> debbugs.gnu.org; Mon, 11 Mar 2024 14:12:22 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <arunisaac@HIDDEN>) id 1rjk7l-0001cm-HE for guix-patches@HIDDEN; Mon, 11 Mar 2024 14:11:46 -0400 Received: from mugam.systemreboot.net ([139.59.75.54]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <arunisaac@HIDDEN>) id 1rjk7g-00054M-Uz for guix-patches@HIDDEN; Mon, 11 Mar 2024 14:11:45 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=systemreboot.net; s=default; h=Content-Transfer-Encoding:MIME-Version: Message-ID:Date:Subject:Cc:To:From:Sender:Reply-To:Content-Type:Content-ID: Content-Description:Resent-Date:Resent-From:Resent-Sender:Resent-To:Resent-Cc :Resent-Message-ID:In-Reply-To:References:List-Id:List-Help:List-Unsubscribe: List-Subscribe:List-Post:List-Owner:List-Archive; bh=JizUg2PTHzKguqbdRXiFFMylA1YhcnQByy/5VlEDi0Q=; b=AYdeZqF1wCjOz3DD2RZG4QMOfN tQ5W5VT9NwPmeXtIKhUUAiNuyFCwgnj6mH0PgPPdWBDHuDMPWyr3GyhWRA0rmzVbeMx2pfvNihRog etdt8v4LKIg5fZZm8/bD9xMpB1NphaFsC7Zdmwa23LBQR2chp5lT3+/6y3PatE2K5smGYWsTeEZ7E pbTQKtVIdhKdbbNtMvh44YqvAtZYyL33zSOhTFLzFdsDNPmVoRKpehqNZgeQjKMWxwbTB+qXWmOaZ IUArhflLzzO8mQ1DTlZ1B51EohzyfG5hnlUMuT/LeQabkJxxSvt3xcktXeGc7LkNau/d9lSRY1Qus uZaVndTw==; Received: from [192.168.2.1] (port=57298 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96.1) (envelope-from <arunisaac@HIDDEN>) id 1rjk5r-0007VG-0r; Mon, 11 Mar 2024 18:09:47 +0000 From: Arun Isaac <arunisaac@HIDDEN> Date: Mon, 11 Mar 2024 18:11:18 +0000 Message-ID: <cover.1710180345.git.arunisaac@HIDDEN> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=139.59.75.54; envelope-from=arunisaac@HIDDEN; helo=mugam.systemreboot.net X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.4 (-) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -2.4 (--) This patchset adds toil. The linter warns that there is a collision between different versions of python-pyparsing. However, it is not possible to avoid that collision without upgrading python-pyparsing. And, the python-pyparsing upgrade is very complex. It requires rebuilding the world. It also introduces a dependency cycle since the latest version of python-pyparsing switches to the pyproject-build-system. Arun Isaac (7): gnu: Add python-typing-extensions-4.10. gnu: Add python-pypubsub. gnu: Add python-addict. gnu: Add python-prefixed. gnu: Add python-enlighten. gnu: Add python-cwltool. gnu: Add python-toil. gnu/packages/bioinformatics.scm | 74 +++++++++++++++++++++++++++++ gnu/packages/python-build.scm | 13 ++++++ gnu/packages/python-xyz.scm | 83 +++++++++++++++++++++++++++++++++ 3 files changed, 170 insertions(+) base-commit: 001dfb89579856b8695b33b59f484f36e313347f -- 2.41.0
Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) Content-Type: text/plain; charset=utf-8 X-Loop: help-debbugs@HIDDEN From: help-debbugs@HIDDEN (GNU bug Tracking System) To: Arun Isaac <arunisaac@HIDDEN> Subject: bug#69736: Acknowledgement ([PATCH 0/7] Add toil) Message-ID: <handler.69736.B.17101807443586.ack <at> debbugs.gnu.org> References: <cover.1710180345.git.arunisaac@HIDDEN> X-Gnu-PR-Message: ack 69736 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 69736 <at> debbugs.gnu.org Date: Mon, 11 Mar 2024 18:13:02 +0000 Thank you for filing a new bug report with debbugs.gnu.org. This is an automatically generated reply to let you know your message has been received. Your message is being forwarded to the package maintainers and other interested parties for their attention; they will reply in due course. Your message has been sent to the package maintainer(s): guix-patches@HIDDEN If you wish to submit further information on this problem, please send it to 69736 <at> debbugs.gnu.org. Please do not send mail to help-debbugs@HIDDEN unless you wish to report a problem with the Bug-tracking system. --=20 69736: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D69736 GNU Bug Tracking System Contact help-debbugs@HIDDEN with problems
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