X-Loop: help-debbugs@HIDDEN Subject: [bug#70535] [Patch] gnu: Add r-lpsolveapi, r-roi, r-roi-plugin-lpsolve, r-detectseparation and r-metadeconfoundr. 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Thread-Index: AQHalW/SWgo/Hxr5FE66apuSaHmrjw== Date: Tue, 23 Apr 2024 11:20:14 +0000 Message-ID: <3c33811b4b1e44449256d3ffc64f33d8@HIDDEN> Accept-Language: en-US, de-DE Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.52] x-tm-as-product-ver: SMEX-14.0.0.3152-9.1.2019-28338.007 x-tm-as-result: No-10--3.815000-5.000000 x-tmase-matchedrid: SD3TfnVbAUrZmVIfLFnK1Ft1REfIxIf4sJRTReM07cw2GdmZM3HbIOv6 z0cEnHUdQSU0V5iF0OGOQ4Wb5/9GQqN+RqZu8M+1YTsQp+n72DorGV73AsU0Z+aRO9WDjl4hUOO sc/slMqNEKZlqWQag3tJzJOBIupPXgb7nR2R/5qUarEv/I2gPyguBdp4gUd1lUMGXjkLjQIf4Dr I1UwEkONkALSJb7SMtDLyAMT5IWwXVrVmL23yTxeiIWAiG856AobPQ7oVMNw+DpGjuFiRSWDWe/ rF557XfKdR/U4tRr/DYSvnsojaQCBClUEUt1OUIYDttQUGqHZU= x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--3.815000-5.000000 x-tmase-version: SMEX-14.0.0.3152-9.1.2019-28338.007 x-tm-snts-smtp: 1ED195BF3579AE9D707C82DCB08B51BC009C092C9B16CA262CE336151D02C1192000:F Content-Type: multipart/alternative; boundary="_000_3c33811b4b1e44449256d3ffc64f33d8mdcberlinde_" MIME-Version: 1.0 Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@HIDDEN; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, HTML_MESSAGE=0.001, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, TVD_SPACE_RATIO=0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -0.1 (/) --_000_3c33811b4b1e44449256d3ffc64f33d8mdcberlinde_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable * gnu/packages/cran.scm (r-lpsolveapi, r-roi, r-roi-plugin-lpsolve, r-detec= tseparation and r-metadeconfoundr): New variables. --_000_3c33811b4b1e44449256d3ffc64f33d8mdcberlinde_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable <html> <head> <meta http-equiv=3D"Content-Type" content=3D"text/html; charset=3Diso-8859-= 1"> <style type=3D"text/css" style=3D"display:none;"><!-- P {margin-top:0;margi= n-bottom:0;} --></style> </head> <body dir=3D"ltr"> <div id=3D"divtagdefaultwrapper" style=3D"font-size:12pt;color:#000000;font= -family:Calibri,Helvetica,sans-serif;" dir=3D"ltr"> <p><span>* gnu/packages/cran.scm (r-lpsolveapi,<span> r-roi, r-roi-plu= gin-lpsolve, r-detectseparation and r-metadeconfoundr</span>): New variable= s.</span></p> </div> </body> </html> --_000_3c33811b4b1e44449256d3ffc64f33d8mdcberlinde_--
Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) Content-Type: text/plain; charset=utf-8 X-Loop: help-debbugs@HIDDEN From: help-debbugs@HIDDEN (GNU bug Tracking System) To: "MadalinIonel.Patrascu@HIDDEN" <MadalinIonel.Patrascu@HIDDEN> Subject: bug#70535: Acknowledgement ([Patch] gnu: Add r-lpsolveapi, r-roi, r-roi-plugin-lpsolve, r-detectseparation and r-metadeconfoundr.) Message-ID: <handler.70535.B.171387132332258.ack <at> debbugs.gnu.org> References: <3c33811b4b1e44449256d3ffc64f33d8@HIDDEN> X-Gnu-PR-Message: ack 70535 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 70535 <at> debbugs.gnu.org Date: Tue, 23 Apr 2024 11:23:04 +0000 Thank you for filing a new bug report with debbugs.gnu.org. This is an automatically generated reply to let you know your message has been received. Your message is being forwarded to the package maintainers and other interested parties for their attention; they will reply in due course. Your message has been sent to the package maintainer(s): guix-patches@HIDDEN If you wish to submit further information on this problem, please send it to 70535 <at> debbugs.gnu.org. Please do not send mail to help-debbugs@HIDDEN unless you wish to report a problem with the Bug-tracking system. --=20 70535: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D70535 GNU Bug Tracking System Contact help-debbugs@HIDDEN with problems
X-Loop: help-debbugs@HIDDEN Subject: [bug#70535] [PATCH 1/5] gnu: Add r-lpsolveapi. 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Change-Id: I6a93603a5814df0eb43a214b5c2a0f4865901bcd --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ee0aac7f7a..4b6ece1eb1 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -8191,6 +8191,26 @@ (define-public r-lpsolve transportation problems.") (license license:lgpl2.0))) +(define-public r-lpsolveapi + (package + (name "r-lpsolveapi") + (version "5.5.2.0-17.11") + (source + (origin + (method url-fetch) + (uri (cran-uri "lpSolveAPI" version)) + (sha256 + (base32 "191zjgyap3kcsvh8fygqqyr9p0agbzm160fzynnpaxf19yp6r3dh")))) + (properties `((upstream-name . "lpSolveAPI"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=lpSolveAPI") + (synopsis "Interface to lp_solve") + (description + "The lpSolveAPI package provides an R interface to lp_solve, a @acronym{MILP, +Mixed Integer Linear Programming}, solver with support for pure linear, (mixed) +integer/binary, semi-continuous and @acronym{SOS, special ordered sets} models.") + (license license:lgpl2.0))) + (define-public r-limsolve (package (name "r-limsolve") base-commit: 2d19e505f6f9f82aebc9ba8c74ba223818acd9bc -- 2.41.0
X-Loop: help-debbugs@HIDDEN Subject: [bug#70535] [PATCH 2/5] gnu: Add r-roi. Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= <madalinionel.patrascu@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: rekado@HIDDEN, guix-patches@HIDDEN Resent-Date: Tue, 23 Apr 2024 11:28:11 +0000 Resent-Message-ID: <handler.70535.B70535.17138716493482 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: followup 70535 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <70535 <at> debbugs.gnu.org> Cc: Ricardo Wurmus <rekado@HIDDEN> X-Debbugs-Original-Xcc: Ricardo Wurmus <rekado@HIDDEN> Received: via spool by 70535-submit <at> debbugs.gnu.org id=B70535.17138716493482 (code B ref 70535); Tue, 23 Apr 2024 11:28:11 +0000 Received: (at 70535) by debbugs.gnu.org; 23 Apr 2024 11:27:29 +0000 Received: from localhost ([127.0.0.1]:51578 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1rzEJ1-0000t7-LI for submit <at> debbugs.gnu.org; Tue, 23 Apr 2024 07:27:28 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:58229) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <MadalinIonel.Patrascu@HIDDEN>) id 1rzEIu-0000qP-C0 for 70535 <at> debbugs.gnu.org; Tue, 23 Apr 2024 07:27:17 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1713871613; x=1715686014; bh=0JUcW75NmMLvuKshEmKNwn50y+N/31awcSEwps1LhO8=; b=iGKtOpS1jzQd zxPiuCjzwlNOgZw/VACrxH/LtKs4YLJ+2FwBP3T9riqc4a4ASL9V1pO3FhVBhENH rzcnQqj/VE8SQ58xn2PelC3HhpcUFxwhO7v5X8uTxHjme6cujqbbfYMBtn9vdkDO 2MsWPxE4sEK0DefWfVHX7/R8RLuyv8U= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id CCCF6A02B6 for <70535 <at> debbugs.gnu.org>; Tue, 23 Apr 2024 13:26:53 +0200 (CEST) Received: from cl-akalin11.mdc-berlin.net (141.80.219.20) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 13:26:53 +0200 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= <madalinionel.patrascu@HIDDEN> Date: Tue, 23 Apr 2024 13:25:43 +0200 Message-ID: <d4a15b3e6caf7bd9da7cb6fd9327fdca66bb79ec.1713871546.git.madalinionel.patrascu@HIDDEN> X-Mailer: git-send-email 2.41.0 In-Reply-To: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@HIDDEN> References: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@HIDDEN> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.219.20] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-AS-Result: No-10--1.594400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcMEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BuP2uihwIy0iu5Y9WGrdMHhV9IJL+D0rbju2XlcEx9HRI3RrBc0CPBXPRq1nQ3qMAKWZ HUg8RxwZiQ8UF7auKdIWUB/KD7fQo8CsHqdsq1hfYeXOEzfM22XiBfPQ+YIRHv9rSd36EgULQoH BWslVIiLKzgxCMDbfQleisCNgs6EF7Eoj104jLm2hrElF6nP31bzPMZzHjmt5g4XQBx7jkzJT4k QUVO9eHmwaw7KkwtOEphMAr6ZaoMfXwhvLZYSPUx6Xh3Vy4y2+O91s7FwLn8xC2a7GIAOqG8ody TXpQo3UZHwBcdw5+Mg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--1.594400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-SNTS-SMTP: D57FCE6495BDC35492259D8C71DE95D451305F23C66EA45EA9B0B83E5E00C4DF2000:F X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-roi): New variable. Change-Id: I58cbb4be238a5cc9f861ee9dafea03a133f7c0f1 --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 4b6ece1eb1..53a964e60a 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -12211,6 +12211,26 @@ (define-public r-randomizr experimental designs and random samples for common sampling designs.") (license license:expat))) +(define-public r-roi + (package + (name "r-roi") + (version "1.0-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ROI" version)) + (sha256 + (base32 "05hnj9fskfm2klz7zv97lb0r60akjq4a1cay8p62whpi0hri9zyl")))) + (properties `((upstream-name . "ROI"))) + (build-system r-build-system) + (propagated-inputs (list r-checkmate r-registry r-slam)) + (home-page "https://roi.r-forge.r-project.org/") + (synopsis "R optimization infrastructure") + (description + "The @acronym{ROI, R Optimization Infrastructure} is a framework for handling +optimization problems in R.") + (license license:gpl3))) + (define-public r-roptim (package (name "r-roptim") -- 2.41.0
X-Loop: help-debbugs@HIDDEN Subject: [bug#70535] [PATCH 3/5] gnu: Add r-roi-plugin-lpsolve. Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= <madalinionel.patrascu@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: rekado@HIDDEN, guix-patches@HIDDEN Resent-Date: Tue, 23 Apr 2024 11:28:16 +0000 Resent-Message-ID: <handler.70535.B70535.17138716623619 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: followup 70535 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <70535 <at> debbugs.gnu.org> Cc: Ricardo Wurmus <rekado@HIDDEN> X-Debbugs-Original-Xcc: Ricardo Wurmus <rekado@HIDDEN> Received: via spool by 70535-submit <at> debbugs.gnu.org id=B70535.17138716623619 (code B ref 70535); Tue, 23 Apr 2024 11:28:16 +0000 Received: (at 70535) by debbugs.gnu.org; 23 Apr 2024 11:27:42 +0000 Received: from localhost ([127.0.0.1]:51582 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1rzEJK-0000wI-68 for submit <at> debbugs.gnu.org; Tue, 23 Apr 2024 07:27:42 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:41669) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <MadalinIonel.Patrascu@HIDDEN>) id 1rzEIu-0000qU-S9 for 70535 <at> debbugs.gnu.org; Tue, 23 Apr 2024 07:27:20 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1713871614; x=1715686015; bh=WlcUp6vLLJkjY0Ncdf0i/dDcBMhb5uuYc2HgYihyAKg=; b=Vi+YB8XNIhRL ZRektPzJjxIudUiY68qM6OdPSv/5WcpMjoCTKgz24fBtnaOsy6+9aY63XFUOyvj1 2t2m8a6/yG9TButfNW13250wh2ZSy7R+h7hQQKWPEgV5wESVDdgfJMFVPaD/OfRp zh2dbrwi0XD8MeD6el238m8UqqeSooM= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 7098FA02B9 for <70535 <at> debbugs.gnu.org>; Tue, 23 Apr 2024 13:26:54 +0200 (CEST) Received: from cl-akalin11.mdc-berlin.net (141.80.219.20) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 13:26:53 +0200 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= <madalinionel.patrascu@HIDDEN> Date: Tue, 23 Apr 2024 13:25:44 +0200 Message-ID: <6e334ad253559aa7d65529fca177c4aa7e01b53f.1713871546.git.madalinionel.patrascu@HIDDEN> X-Mailer: git-send-email 2.41.0 In-Reply-To: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@HIDDEN> References: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@HIDDEN> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.219.20] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-AS-Result: No-10--3.075400-5.000000 X-TMASE-MatchedRID: I6rpFm0lrcMEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BuP2uihwIy0iu5Y9WGrdMHhV9IJL+D0rbju2XlcEx9HRj5v3GQstxVQLbwVZWOSEXgwc XAXhG85fmyKOv7+2sE8q80Y2YbRJTr54JIx46I6QKjLWrARtscyaSuBfcJyImVGpM/94x8OywHX nHVkAsxUbR9GX4qnwRs+seg3+tFV6PJinDlR90er33NopZlLJVNpMKhNMrOKhq8q0rcNoVzIFsc MwAjCz4l2SIFRzaaBlB/YaCPpWnV2v7tbktQlBGWSgmpbFZnEI1kD2KtSTmq2Pbt5Stv2K5/Ox0 TU9Ci5I= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--3.075400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-SNTS-SMTP: B7CCDCA1D9B4592084BB4C7C940C366CC9E53BAF01F31175FD7C6B9A120EA4FB2000:F X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-roi-plugin-lpsolve): New variable. Change-Id: Ia3f47ba0b414ecd9273c101977ec8d14916fa656 --- gnu/packages/cran.scm | 20 ++++++++++++++++++++ 1 file changed, 20 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 53a964e60a..1fdd5eb685 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1680,6 +1680,26 @@ (define-public r-rocit metrics.") (license license:gpl3))) +(define-public r-roi-plugin-lpsolve + (package + (name "r-roi-plugin-lpsolve") + (version "1.0-2") + (source + (origin + (method url-fetch) + (uri (cran-uri "ROI.plugin.lpsolve" version)) + (sha256 + (base32 "0xgg1fzq5sba3yvvrci3iw97p31walpnhv4zwnd39gw8v5z6f9dj")))) + (properties `((upstream-name . "ROI.plugin.lpsolve"))) + (build-system r-build-system) + (propagated-inputs (list r-lpsolveapi r-roi)) + (home-page "https://roigrp.gitlab.io") + (synopsis "Plugin of lp_solve for the R optimization infrastructure") + (description + "This package enhances the @acronym{ROI, R Optimization Infrastructure} with +the lp_solve solver.") + (license license:gpl3))) + (define-public r-rorcid (package (name "r-rorcid") -- 2.41.0
X-Loop: help-debbugs@HIDDEN Subject: [bug#70535] [PATCH 4/5] gnu: Add r-detectseparation. 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Change-Id: I6c795719c22a6ff929785e799f749ce053e83fbe --- gnu/packages/cran.scm | 32 ++++++++++++++++++++++++++++++++ 1 file changed, 32 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1fdd5eb685..57dabc8ec3 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4253,6 +4253,38 @@ (define-public r-depmixs4 mixture models.") (license license:gpl2+))) +(define-public r-detectseparation + (package + (name "r-detectseparation") + (version "0.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "detectseparation" version)) + (sha256 + (base32 "05z3p1z5mhmdj5qdknz1b8f6fwbghzckl88pv79v59cfwpbvgmz8")))) + (properties `((upstream-name . "detectseparation"))) + (build-system r-build-system) + (propagated-inputs (list r-lpsolveapi r-pkgload r-roi r-roi-plugin-lpsolve)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/ikosmidis/detectseparation") + (synopsis + "Detect and check for separation and infinite maximum likelihood estimates") + (description + "This package provides pre-fit and post-fit methods for detecting separation +and infinite maximum likelihood estimates in generalized linear models with +categorical responses. The pre-fit methods apply on binomial-response generalized +liner models such as logit, probit and cloglog regression, and can be directly +supplied as fitting methods to the @code{glm()} function. The post-fit methods +apply to models with categorical responses, including binomial-response +generalized linear models and multinomial-response models, such as baseline +category logits and adjacent category logits models; for example, the models +implemented in the brglm2 package. The post-fit methods successively refit the +model with increasing number of iteratively reweighted least squares iterations, +and monitor the ratio of the estimated standard error for each parameter to what +it has been in the first iteration.") + (license license:gpl3))) + (define-public r-readxl (package (name "r-readxl") -- 2.41.0
X-Loop: help-debbugs@HIDDEN Subject: [bug#70535] [PATCH 5/5] gnu: Add r-metadeconfoundr. Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= <madalinionel.patrascu@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: rekado@HIDDEN, guix-patches@HIDDEN Resent-Date: Tue, 23 Apr 2024 11:28:20 +0000 Resent-Message-ID: <handler.70535.B70535.17138716643644 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: followup 70535 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: <70535 <at> debbugs.gnu.org> Cc: Ricardo Wurmus <rekado@HIDDEN> X-Debbugs-Original-Xcc: Ricardo Wurmus <rekado@HIDDEN> Received: via spool by 70535-submit <at> debbugs.gnu.org id=B70535.17138716643644 (code B ref 70535); Tue, 23 Apr 2024 11:28:20 +0000 Received: (at 70535) by debbugs.gnu.org; 23 Apr 2024 11:27:44 +0000 Received: from localhost ([127.0.0.1]:51586 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1rzEJL-0000wV-5z for submit <at> debbugs.gnu.org; Tue, 23 Apr 2024 07:27:44 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]:48133) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <MadalinIonel.Patrascu@HIDDEN>) id 1rzEIv-0000qn-VK for 70535 <at> debbugs.gnu.org; Tue, 23 Apr 2024 07:27:23 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1713871615; x=1715686016; bh=9t/mnNAUXvhSpDTMmFA+119bdyv2dDOX9o/3WgZtyEc=; b=dpdZDXfTiY/m 6ke2J1P0ZGQXP/OlWCUU4BdnunCu6DcdUoi8DaJDGYp6x4cVxtH+J2DBuVSaVYv2 l3h6fWmTu2jMaPbY+O7mYsqXA4rzESQeAqYqs0+zEntDMW2kgZDu+KT4t/15UPKL UAhpOBFCI/WFAWySm663NZp/9Cywkm8= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 7294CA02D0 for <70535 <at> debbugs.gnu.org>; Tue, 23 Apr 2024 13:26:55 +0200 (CEST) Received: from cl-akalin11.mdc-berlin.net (141.80.219.20) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 13:26:54 +0200 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= <madalinionel.patrascu@HIDDEN> Date: Tue, 23 Apr 2024 13:25:46 +0200 Message-ID: <bda80f881fb9f31f0c0a694237c7876c6d36dea9.1713871546.git.madalinionel.patrascu@HIDDEN> X-Mailer: git-send-email 2.41.0 In-Reply-To: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@HIDDEN> References: <169f518d77f20df0bfa5f59d5e4a6d4cd7d2282b.1713871546.git.madalinionel.patrascu@HIDDEN> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.219.20] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-AS-Result: No-10--2.755500-5.000000 X-TMASE-MatchedRID: ZAkTtSyZ7B4EZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhT8G rOCpEVPfd3WaQ3GsfAGQd7hqnnHt1D8QN0j0kvfBFm7cDHk2CrxR3UkpERYmZG+JnhV8fY5sAxI +UWxLhU3b6BScdt0umD4dyzxrPSnIj0JAXfvDdWvJtoyGVE0N8AjIhAT2d4YV7KCoGDogSW/QED 4DCZd1zNVodJeFGnl2oPM6HIwpXhTM/fxBPasX2BTQh4VYEDfkDV6Iiby24ZdVzqjGDXmIZhEuO qgkm3/1uSW68VCdRGSiWLhmiI4dP+5bqUkQKW6WzEVb/qxkUfiBZin66arg6fp0hsR5QB1hmgTL YtH9/xC6POz5YTgkbl4AKspTZB2XEHfFTNZUGCovmZjuVz/eq84nHbRF8bTqndYJGDelwst0CfP GRz/A475iX+rqLWae/WY7WJgskOpPhxsEgoy4er7rweoAIK8o X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.755500-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-SNTS-SMTP: B4BA6CC67418246CB6DA85051D653877924FB33C82015C9C216CB0DAFD21970B2000:F X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-metadeconfoundr): New variable. Change-Id: I733fb464d2a3c7fd1335826be9f23e2610e6fd60 --- gnu/packages/cran.scm | 41 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 41 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 57dabc8ec3..46749aa714 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -41612,6 +41612,47 @@ (define-public r-metadat analyses.") (license license:gpl2+))) +(define-public r-metadeconfoundr + ;; There are some consistent updates after the release of version 0.3.0. + (let ((commit "90aec0226c5128bfcbbc08903452eff460d21424") + (revision "1")) + (package + (name "r-metadeconfoundr") + (version (git-version "0.3.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/TillBirkner/metadeconfoundR") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0zkqar27p5qwq46xbxsw5x1pl50xbkgqiizw5bydlyhwb0ga2f3h")))) + (properties `((upstream-name . "metadeconfoundR"))) + (build-system r-build-system) + (propagated-inputs (list r-bigmemory + r-detectseparation + r-doparallel + r-dosnow + r-foreach + r-futile-logger + r-ggplot2 + r-lme4 + r-lmtest + r-reshape2 + r-snow)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/TillBirkner/metadeconfoundR") + (synopsis "Check multiple covariates for potenial confounding effects") + (description + "This package detects naive associations between omics features and +metadata in cross-sectional data-sets using non-parametric tests. In a second +step, confounding effects between metadata associated to the same omics feature +are detected and labeled using nested post-hoc model comparison tests. The +generated output can be graphically summarized using the built-in plotting +function.") + (license license:gpl2)))) + (define-public r-mathjaxr (package (name "r-mathjaxr") -- 2.41.0
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