Received: (at 73304) by debbugs.gnu.org; 14 Oct 2024 11:12:22 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon Oct 14 07:12:22 2024 Received: from localhost ([127.0.0.1]:35549 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1t0Izt-0002BU-KF for submit <at> debbugs.gnu.org; Mon, 14 Oct 2024 07:12:21 -0400 Received: from eggs.gnu.org ([209.51.188.92]:53154) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <ludo@HIDDEN>) id 1t0Izr-0002BB-Jv for 73304 <at> debbugs.gnu.org; Mon, 14 Oct 2024 07:12:20 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1t0IzU-0000yh-CS; Mon, 14 Oct 2024 07:11:56 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:Date:References:In-Reply-To:Subject:To: From; bh=FWcXBZK3GlbRL7N0xbduCCaXyEVF/cal8Nj70oqrVr8=; b=X4il2AgOY5/vxNi/XR0E fQWPpyvW/q92YfHXqtPdtD2k4rJV3ZT7Z9aQYEqfnybSTl9HnY4fItJG8LN6f/PvCbOYcVjFblli4 ksnaGeF05mZGY08FH0S/AINafRxzupsGPt30oSZvXRaW3kiuhL9IGtfIfIvXGn3dS+91TeXQx0YeD Jck8BGU+38TZN0V2owaX+aEURU0BYWWtNcFmVlIGgkxeuPbJ2z3+tZ2G/moLbsrMWQowt75qKh7jl 9nTYx8liZveBaoad+XcgKW+rWi1/mnvaCXVAYfShs98ltbZ5qrX0RiHImXMZ/rqg+FECDpyQb+4sS Nxtck2/xOiEnDw==; From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN> To: Konrad Hinsen <konrad.hinsen@HIDDEN> Subject: Re: bug#73304: Python in relocatable guix pack leads to wrong sys.path In-Reply-To: <m1bjzxeisd.fsf@HIDDEN> (Konrad Hinsen's message of "Sun, 06 Oct 2024 10:29:22 +0200") References: <87ed5j1jzd.fsf@HIDDEN> <87zfno3l4i.fsf@HIDDEN> <m15xqbqb3w.fsf@HIDDEN> <m1jzeq4sw3.fsf@HIDDEN> <m1bjzxeisd.fsf@HIDDEN> X-URL: http://www.fdn.fr/~lcourtes/ X-Revolutionary-Date: Tridi 23 =?utf-8?Q?Vend=C3=A9miaire?= an 233 de la =?utf-8?Q?R=C3=A9volution=2C?= jour du Navet X-PGP-Key-ID: 0x090B11993D9AEBB5 X-PGP-Key: http://www.fdn.fr/~lcourtes/ludovic.asc X-PGP-Fingerprint: 3CE4 6455 8A84 FDC6 9DB4 0CFB 090B 1199 3D9A EBB5 X-OS: x86_64-pc-linux-gnu Date: Mon, 14 Oct 2024 13:11:36 +0200 Message-ID: <87a5f73pnb.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 73304 Cc: Rutherther <rutherther@HIDDEN>, 73304 <at> debbugs.gnu.org, Josselin Poiret <dev@HIDDEN>, Maxim Cournoyer <maxim.cournoyer@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) Hello, Konrad Hinsen <konrad.hinsen@HIDDEN> skribis: > Konrad Hinsen <konrad.hinsen@HIDDEN> writes: > >> I have changed my mind. In the sys.path outputs shown, there are no >> paths from add-on packages. It's just the Python standard library. >> Maybe our sitecustomize.py is not run at all, but if it is, it didn't do >> anything to sys.path. There must be a bug somewhere else. > > Our sitecustomize.py is indeed not run at all, so this definitely is a > different problem. > > Evidence: Run Rutherther's example, adding the -v option. The long > output is attached, both for "./profile/bin/python3 -v" and "$(realpath > ./profile/bin/python3) -v". Search for "site-packages" to find the > interesting parts. If you don't use realpath, large parts of the > initialization are not done. > > There are lots of ../../ in the path shown in these log files. If Python > resolves them lexically, as the normpath function does, that would > probably explain most of these issues. Ouch. Any idea where to look for solutions here? Ludo=E2=80=99.
bug-guix@HIDDEN:bug#73304; Package guix.
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Sun, 6 Oct 2024 04:29:24 -0400 (EDT) From: Konrad Hinsen <konrad.hinsen@HIDDEN> To: Ludovic =?utf-8?Q?Court=C3=A8s?= <ludo@HIDDEN>, Rutherther <rutherther@HIDDEN> Subject: Re: bug#73304: Python in relocatable guix pack leads to wrong sys.path In-Reply-To: <m1jzeq4sw3.fsf@HIDDEN> References: <87ed5j1jzd.fsf@HIDDEN> <87zfno3l4i.fsf@HIDDEN> <m15xqbqb3w.fsf@HIDDEN> <m1jzeq4sw3.fsf@HIDDEN> Date: Sun, 06 Oct 2024 10:29:22 +0200 Message-ID: <m1bjzxeisd.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="=-=-=" X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 73304 Cc: 73304 <at> debbugs.gnu.org, Josselin Poiret <dev@HIDDEN>, Maxim Cournoyer <maxim.cournoyer@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.7 (-) --=-=-= Content-Type: text/plain Konrad Hinsen <konrad.hinsen@HIDDEN> writes: > I have changed my mind. In the sys.path outputs shown, there are no > paths from add-on packages. It's just the Python standard library. > Maybe our sitecustomize.py is not run at all, but if it is, it didn't do > anything to sys.path. There must be a bug somewhere else. Our sitecustomize.py is indeed not run at all, so this definitely is a different problem. Evidence: Run Rutherther's example, adding the -v option. The long output is attached, both for "./profile/bin/python3 -v" and "$(realpath ./profile/bin/python3) -v". Search for "site-packages" to find the interesting parts. If you don't use realpath, large parts of the initialization are not done. There are lots of ../../ in the path shown in these log files. If Python resolves them lexically, as the normpath function does, that would probably explain most of these issues. 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bug-guix@HIDDEN:bug#73304; Package guix.
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Wed, 2 Oct 2024 07:59:57 -0400 (EDT) From: Konrad Hinsen <konrad.hinsen@HIDDEN> To: Ludovic =?utf-8?Q?Court=C3=A8s?= <ludo@HIDDEN>, Rutherther <rutherther@HIDDEN> Subject: Re: bug#73304: Python in relocatable guix pack leads to wrong sys.path In-Reply-To: <m15xqbqb3w.fsf@HIDDEN> References: <87ed5j1jzd.fsf@HIDDEN> <87zfno3l4i.fsf@HIDDEN> <m15xqbqb3w.fsf@HIDDEN> Date: Wed, 02 Oct 2024 13:59:56 +0200 Message-ID: <m1jzeq4sw3.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 73304 Cc: 73304 <at> debbugs.gnu.org, Josselin Poiret <dev@HIDDEN>, Maxim Cournoyer <maxim.cournoyer@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.7 (-) Konrad Hinsen <konrad.hinsen@HIDDEN> writes: > This problem clearly looks like it's caused by our sitecustomize.py. > One indicator is "When I add both python and a python package": if there > is no additional package, only python by itself, our sitecustomize > doesn't do anything. I have changed my mind. In the sys.path outputs shown, there are no paths from add-on packages. It's just the Python standard library. Maybe our sitecustomize.py is not run at all, but if it is, it didn't do anything to sys.path. There must be a bug somewhere else. Cheers, Konrad.
bug-guix@HIDDEN:bug#73304; Package guix.
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From: Konrad Hinsen <konrad.hinsen@HIDDEN>
To: Ludovic =?utf-8?Q?Court=C3=A8s?= <ludo@HIDDEN>, Rutherther
<rutherther@HIDDEN>
Subject: Re: bug#73304: Python in relocatable guix pack leads to wrong sys.path
In-Reply-To: <87zfno3l4i.fsf@HIDDEN>
References: <87ed5j1jzd.fsf@HIDDEN> <87zfno3l4i.fsf@HIDDEN>
Date: Wed, 02 Oct 2024 08:20:51 +0200
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Cc: 73304 <at> debbugs.gnu.org, Josselin Poiret <dev@HIDDEN>,
Maxim Cournoyer <maxim.cournoyer@HIDDEN>
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Ludovic Court=C3=A8s <ludo@HIDDEN> writes:
> Rutherther <rutherther@HIDDEN> skribis:
>
>> When I add both python and a python package (seems like any) to a
>> relocatable guix pack, the resulting python in the merged profile seems
>> to be broken. Specifically its `sys.path` contains missing paths.
> Commit d5e0180805f52ef38a03ff9d6c11dd6174e3526b fixed a similar issue I
> think, discussed at <https://issues.guix.gnu.org/53258>.
>
> Not sure whether it=E2=80=99s a new problem here. Konrad, Maxim, Josseli=
n,
> WDYT? :-)
This problem clearly looks like it's caused by our sitecustomize.py.
One indicator is "When I add both python and a python package": if there
is no additional package, only python by itself, our sitecustomize
doesn't do anything.
However, I don't see how the recent patch (see
https://issues.guix.gnu.org/68241) could be responsible for this new
problem. It should have happened before as well.
Here is what sitecustomize.py does:
1. Collect the "site-packages" subdirectories of everything on
$GUIX_PYTHONPATH.
2. Normalize them via sys.normpath()
3. Add them to sys.path
4. Re-arrange the elements in sys.path such that the add-on
packages come before Python's standard library.
The recent patch fixes a bug in the last step, which wasn't executed at
all (and generated an error message). So the difference between the
current and the previous behavior is only the order of entries in
sys.path.
The current problem is that even the standard library's paths are wrong.
I suspect that this is due to sys.normpath not implementing the correct
POSIX semantics for dot-dot.
Cheers,
Konrad.
bug-guix@HIDDEN:bug#73304; Package guix.
Full text available.Received: (at 73304) by debbugs.gnu.org; 2 Oct 2024 01:08:31 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue Oct 01 21:08:31 2024 Received: from localhost ([127.0.0.1]:54772 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1svnqw-000477-Bu for submit <at> debbugs.gnu.org; Tue, 01 Oct 2024 21:08:31 -0400 Received: from ditigal.xyz ([78.46.201.50]:59286 helo=mail.ditigal.xyz) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <rutherther@HIDDEN>) id 1sviib-0006v7-7U for 73304 <at> debbugs.gnu.org; Tue, 01 Oct 2024 15:39:35 -0400 Received: by cerebrum (OpenSMTPD) with ESMTPSA id 3bc40d8e (TLSv1.3:TLS_CHACHA20_POLY1305_SHA256:256:NO); Tue, 1 Oct 2024 19:39:25 +0000 (UTC) From: Rutherther <rutherther@HIDDEN> To: Ludovic =?utf-8?Q?Court=C3=A8s?= <ludo@HIDDEN> Subject: Re: bug#73304: Python in relocatable guix pack leads to wrong sys.path In-Reply-To: <87zfno3l4i.fsf@HIDDEN> References: <87zfno3l4i.fsf@HIDDEN> Date: Tue, 01 Oct 2024 21:39:23 +0200 Message-ID: <87ttdv8vf8.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=ditigal.xyz; i=@ditigal.xyz; q=dns/txt; s=20240917; t=1727811565; h=from : to : cc : subject : in-reply-to : references : date : message-id : mime-version : content-type : content-transfer-encoding : from; bh=yigFF9Bn4UZBxrRQFcbY6bntlKpcx9V1K4+jo2jpeTw=; b=pmEXZXfszOAhIqByR6slvEWPfWNfV+lkaU0z5W5qTG5kwQsJVBDdpUU21fHnnBG1YSRsd rWTU3+c5ahr7yLzoQAmfN9k2dQm8vCeiBHLZP2bTeSVBKt3aQZfoW3MFo5s0dc8lQk6WNMf outnZ+AXG/23S+G3ToFe0XU+UuoDZIg= X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 73304 X-Mailman-Approved-At: Tue, 01 Oct 2024 21:08:29 -0400 Cc: Josselin Poiret <dev@HIDDEN>, 73304 <at> debbugs.gnu.org, Konrad Hinsen <konrad.hinsen@HIDDEN>, Maxim Cournoyer <maxim.cournoyer@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Ludovic Court=C3=A8s <ludo@HIDDEN> writes: > Commit d5e0180805f52ef38a03ff9d6c11dd6174e3526b fixed a similar issue I > think, discussed at <https://issues.guix.gnu.org/53258>. > > Not sure whether it=E2=80=99s a new problem here. Konrad, Maxim, Josseli= n, > WDYT? :-) Hello Ludovic, if I understand correctly this commit was merged to master with the quite-recent core-updates merge? The experiment I did was after this. Moreover, I tried with newest master now to make sure, and still the same behavior. I will try to investigate this myself after I get some time (which may be quite a while) if no one else will get to it until that time. Regards, Rutherther. PS: sorry for the e-mail change, I recently set up self-hosted one, so let's see how well it works with debbugs / your gnu.org address. :)
bug-guix@HIDDEN:bug#73304; Package guix.
Full text available.Received: (at 73304) by debbugs.gnu.org; 30 Sep 2024 21:09:15 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon Sep 30 17:09:15 2024 Received: from localhost ([127.0.0.1]:47159 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1svNdr-0006vU-1U for submit <at> debbugs.gnu.org; Mon, 30 Sep 2024 17:09:15 -0400 Received: from eggs.gnu.org ([209.51.188.92]:39474) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <ludo@HIDDEN>) id 1svNdp-0006vH-Jw for 73304 <at> debbugs.gnu.org; Mon, 30 Sep 2024 17:09:14 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1svNdC-0004LZ-OM; Mon, 30 Sep 2024 17:08:34 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:Date:References:In-Reply-To:Subject:To: From; bh=djJSjsmB+S+EQBdoG63qd/54r4T76r2bla/2KzmYHaU=; b=ELb1qwBYZ1OcZ7shYxJ8 jTQSeunZyTHTiqH0yVb1ShQekRCWkJF+LwEjOMjxdx1ab5HCu/5fCUl5PPGJ8a/o1DT33vXS6wmug SCgfGZz1kIMH1OHXzlyWNykrPWUdxLO0+o5ZflW4XD266xDLCV3o0owZRAGFVC4rAdffGSE0/vreY Sip0mK4PRifsdjmrur8eyUEVRWJCZpkdjq+8kA28I3b7x8xm2sW4s4J2pkwGQy+Cy8qoKKUIgzwVh LL8u8ai/HqkrDrY1IiM/om5JF5InLgg/jEBlZo94uiVpp2yx0/uiqwJe9n14BpTlt7DPo1Cn+LUYT tdHPC2cmlYhMig==; From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN> To: Rutherther <rutherther@HIDDEN> Subject: Re: bug#73304: Python in relocatable guix pack leads to wrong sys.path In-Reply-To: <87ed5j1jzd.fsf@HIDDEN> (rutherther@HIDDEN's message of "Mon, 16 Sep 2024 19:23:04 +0000") References: <87ed5j1jzd.fsf@HIDDEN> Date: Mon, 30 Sep 2024 23:08:29 +0200 Message-ID: <87zfno3l4i.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 73304 Cc: Josselin Poiret <dev@HIDDEN>, 73304 <at> debbugs.gnu.org, Konrad Hinsen <konrad.hinsen@HIDDEN>, Maxim Cournoyer <maxim.cournoyer@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) Hello, Rutherther <rutherther@HIDDEN> skribis: > When I add both python and a python package (seems like any) to a > relocatable guix pack, the resulting python in the merged profile seems > to be broken. Specifically its `sys.path` contains missing paths. > > To replicate: > ``` > mkdir -p /tmp/b && cd /tmp/b > tar xzvf $(guix pack -RR python python-pyflakes -S /profile=3D)` > ``` > > Then try executing the python from merged profile, and see sys.path output > > ./profile/bin/python3 >>>> import sys >>>> print(sys.path) > ['', '/tmp/b/pwajwfiygrkmag8fm1wzn3cf362j7sri-python-3.10.7R/lib/python31= 0.zip', '/tmp/b/pwajwfiygrkmag8fm1wzn3cf362j7sri-python-3.10.7R/lib/python3= .10', '/tmp/b/pwajwfiygrkmag8fm1wzn3cf362j7sri-python-3.10.7R/lib/python3.1= 0/lib-dynload', '/tmp/b/pwajwfiygrkmag8fm1wzn3cf362j7sri-python-3.10.7R/lib= /python3.10/site-packages'] > > > Now if you instead use the realpath of this python > > $(realpath ./profile/bin/python3) >>>> import sys >>>> print(sys.path) > ['', '/tmp/b/gnu/store/pwajwfiygrkmag8fm1wzn3cf362j7sri-python-3.10.7R/li= b/python310.zip', '/tmp/b/gnu/store/pwajwfiygrkmag8fm1wzn3cf362j7sri-python= -3.10.7R/lib/python3.10', '/tmp/b/gnu/store/pwajwfiygrkmag8fm1wzn3cf362j7sr= i-python-3.10.7R/lib/python3.10/lib-dynload', '/tmp/b/gnu/store/pwajwfiygrk= mag8fm1wzn3cf362j7sri-python-3.10.7R/lib/python3.10/site-packages'] > > As can be observed, the first instance misses "gnu/store" in the path, > and instead points to a path that does not exist. Commit d5e0180805f52ef38a03ff9d6c11dd6174e3526b fixed a similar issue I think, discussed at <https://issues.guix.gnu.org/53258>. Not sure whether it=E2=80=99s a new problem here. Konrad, Maxim, Josselin, WDYT? :-) Thanks, Ludo=E2=80=99.
bug-guix@HIDDEN:bug#73304; Package guix.
Full text available.Received: (at 73304) by debbugs.gnu.org; 16 Sep 2024 19:29:18 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon Sep 16 15:29:18 2024 Received: from localhost ([127.0.0.1]:53318 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1sqHPS-0003Hu-BP for submit <at> debbugs.gnu.org; Mon, 16 Sep 2024 15:29:18 -0400 Received: from mail-40131.protonmail.ch ([185.70.40.131]:33225) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <rutherther@HIDDEN>) id 1sqHPQ-0003He-6j for 73304 <at> debbugs.gnu.org; Mon, 16 Sep 2024 15:29:16 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=protonmail.com; s=protonmail3; t=1726514936; x=1726774136; bh=mbtZAy8ZkKiiPlx+wmF8cf/VMU7r1XpRs9nyOekk9PA=; h=Date:To:From:Subject:Message-ID:Feedback-ID:From:To:Cc:Date: Subject:Reply-To:Feedback-ID:Message-ID:BIMI-Selector; b=Kojn3VdshWsRCpHoppwVHTPsDIJ961+LNaTsdOolzX6kq4123NXBDXMMMFiR6uzgH IpndEp60p+UZaRcRCmmjHDH7slMRdNcGL6UYUqWvN+y2NCHRDXPRODhT9D2xtH86LE 2bBKP4CXShQGrM7qSujQ2yresCxCGS2CPRwhByEUZoWg5nKrCk0a/znJAqw7wAd07h GCASYqg+NJcG3IrYsKAsC8TDvttlOqfx7N2//5PkaDtcx2OwAqIKFgLSDcDZHUjo27 Ypd6WFDlPSBmYBALIEqL2Ld0MSwfoAMHsE5i7/zCKmu2mseSEmBfPdcAcUWaBItKTD pYWMlCuUfCsLQ== Date: Mon, 16 Sep 2024 19:28:51 +0000 To: 73304 <at> debbugs.gnu.org From: Rutherther <rutherther@HIDDEN> Subject: Re: Python in relocatable guix pack leads to wrong sys.path Message-ID: <87bk0n1jps.fsf@HIDDEN> Feedback-ID: 8107604:user:proton X-Pm-Message-ID: d4cb9c763c00ac35d4ef14cc52679cf9d6fb3c6f MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 73304 X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) As a workaround, the profile in gnu/store can be used instead of the one exposed by -S symlink. Specifically, getting `realpath ./profile` and using that as the profile instead of `./profile` directly resolves the issue.
bug-guix@HIDDEN:bug#73304; Package guix.
Full text available.Received: (at submit) by debbugs.gnu.org; 16 Sep 2024 19:23:37 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon Sep 16 15:23:37 2024 Received: from localhost ([127.0.0.1]:53301 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1sqHJw-0002z5-JY for submit <at> debbugs.gnu.org; Mon, 16 Sep 2024 15:23:36 -0400 Received: from lists.gnu.org ([209.51.188.17]:33472) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <rutherther@HIDDEN>) id 1sqHJu-0002yx-II for submit <at> debbugs.gnu.org; Mon, 16 Sep 2024 15:23:35 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <rutherther@HIDDEN>) id 1sqHJe-0003t6-6S for bug-guix@HIDDEN; Mon, 16 Sep 2024 15:23:18 -0400 Received: from mail-4322.protonmail.ch ([185.70.43.22]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <rutherther@HIDDEN>) id 1sqHJZ-0005qE-I9 for bug-guix@HIDDEN; Mon, 16 Sep 2024 15:23:17 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=protonmail.com; s=protonmail3; t=1726514589; x=1726773789; bh=aUqyT85b9lNJdX699rTvLhMjVDFd5uugtf5P82bCnug=; h=Date:To:From:Subject:Message-ID:Feedback-ID:From:To:Cc:Date: Subject:Reply-To:Feedback-ID:Message-ID:BIMI-Selector; b=vcrr9MWi/mj5+Ko1Rs+MLrEg1lFVlIncDDIJd7bz0Caq2UsZ/7Y/x5RiGRVHuh15a 2VpJy3GgJLGIWIdr/TadkLYSLE9e9n1+cQMUxlcWQ8N4tKscBJKAaF6jZjNtU0SsF0 si/MyZhrP8mN053EMJmKplo9eBRACUSYVFmsvRLC1DG7s4K69mYuM7XMBghrbNdpQt tDAl92DdkzZZx0alcNv6yZtFfPQLWGfAZMyVaeyCd6Ucps8BykEzinsTF04qVtDLv8 XX2Xy7WEZtM+AGK1ZbGlNtEcLwcZRcPblkpqSsMBEkECrV1qMQbPodoaVkLtQ6ac7w qNuDf3beIstAQ== Date: Mon, 16 Sep 2024 19:23:04 +0000 To: bug-guix@HIDDEN From: Rutherther <rutherther@HIDDEN> Subject: Python in relocatable guix pack leads to wrong sys.path Message-ID: <87ed5j1jzd.fsf@HIDDEN> Feedback-ID: 8107604:user:proton X-Pm-Message-ID: c9efd0637c333d35c1f16874564cb84ea6cbc489 MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=185.70.43.22; envelope-from=rutherther@HIDDEN; helo=mail-4322.protonmail.ch X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_MSPIKE_H4=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -2.3 (--) When I add both python and a python package (seems like any) to a relocatable guix pack, the resulting python in the merged profile seems to be broken. Specifically its `sys.path` contains missing paths. To replicate: ``` mkdir -p /tmp/b && cd /tmp/b tar xzvf $(guix pack -RR python python-pyflakes -S /profile=3D)` ``` Then try executing the python from merged profile, and see sys.path output --8<---------------cut here---------------start------------->8--- ./profile/bin/python3 >>> import sys >>> print(sys.path) ['', '/tmp/b/pwajwfiygrkmag8fm1wzn3cf362j7sri-python-3.10.7R/lib/python310.= zip', '/tmp/b/pwajwfiygrkmag8fm1wzn3cf362j7sri-python-3.10.7R/lib/python3.1= 0', '/tmp/b/pwajwfiygrkmag8fm1wzn3cf362j7sri-python-3.10.7R/lib/python3.10/= lib-dynload', '/tmp/b/pwajwfiygrkmag8fm1wzn3cf362j7sri-python-3.10.7R/lib/p= ython3.10/site-packages'] --8<---------------cut here---------------end--------------->8--- Now if you instead use the realpath of this python --8<---------------cut here---------------start------------->8--- $(realpath ./profile/bin/python3) >>> import sys >>> print(sys.path) ['', '/tmp/b/gnu/store/pwajwfiygrkmag8fm1wzn3cf362j7sri-python-3.10.7R/lib/= python310.zip', '/tmp/b/gnu/store/pwajwfiygrkmag8fm1wzn3cf362j7sri-python-3= .10.7R/lib/python3.10', '/tmp/b/gnu/store/pwajwfiygrkmag8fm1wzn3cf362j7sri-= python-3.10.7R/lib/python3.10/lib-dynload', '/tmp/b/gnu/store/pwajwfiygrkma= g8fm1wzn3cf362j7sri-python-3.10.7R/lib/python3.10/site-packages'] --8<---------------cut here---------------end--------------->8--- As can be observed, the first instance misses "gnu/store" in the path, and instead points to a path that does not exist. I have not investigated, at least not yet, where this discrepancy comes from. I was not able to replicate this with anything else than relocatable pack. So my guess would be something strange happens when making bwrap/fakechroot etc. Regards, Rutherther
Rutherther <rutherther@HIDDEN>:bug-guix@HIDDEN.
Full text available.bug-guix@HIDDEN:bug#73304; Package guix.
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