Received: (at 73649) by debbugs.gnu.org; 11 Dec 2024 23:35:40 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Wed Dec 11 18:35:40 2024 Received: from localhost ([127.0.0.1]:36808 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1tLWF1-0001a7-L0 for submit <at> debbugs.gnu.org; Wed, 11 Dec 2024 18:35:39 -0500 Received: from sender4-op-o12.zoho.com ([136.143.188.12]:17273) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <mail@HIDDEN>) id 1tLWEy-0001Zs-3r for 73649 <at> debbugs.gnu.org; Wed, 11 Dec 2024 18:35:38 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1733960132; cv=none; d=zohomail.com; s=zohoarc; b=LuCLZM9PVtt+VmoLdvELYGiBymlR5gdHZwViX043BnsP/10RGTuk4oxoVmILPaaBKJVqGlXsWbfJXb8cm0jqCPp/PGGFSjU4Q/YE25bW2yYMCm8PL/ILmjXlh06pKm/+renR7WR8P5WTTyomIqacvA87EWo3r56xgzp3wARWP50= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1733960132; h=Content-Type:Cc:Cc:Date:Date:From:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:Subject:To:To:Message-Id:Reply-To; bh=Xe2TwEikpF9YW8hI1YETLEfyfjwqg8Dc+g8/O1ekS0g=; b=ayfPMj35VqaxAGQ40c3j9AmuiPGLSiMa+X24y9M8d1dwz0dU3BfwICF1/1CyNJTAZio5ZE6lSwSpt0bpxlv+3wmzQeP/KXQhmjTfWP2FO0owp9h8ceXiKke3NNMh2GfhL5cs8BOfNxycEjIT+2nykkKRxTDjuLK6X6ntWi4aNIQ= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=antr.me; spf=pass smtp.mailfrom=mail@HIDDEN; dmarc=pass header.from=<mail@HIDDEN> DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1733960132; s=zmail; d=antr.me; i=mail@HIDDEN; h=From:From:To:To:Cc:Cc:Subject:Subject:In-Reply-To:References:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To; bh=Xe2TwEikpF9YW8hI1YETLEfyfjwqg8Dc+g8/O1ekS0g=; b=d0q+dCAWkBHufIL3Jxv2bjSziWjYKcipn8uaMjntKYiutmq3eUMw9ZoJbVlpaw9q XDToLTOUP2NK4oxfyrzVY9f8DNymMRIi+LlKkwvy3RaoIt3EhMM3JnS5aVBXIF+h4gi I/oEG7kGTwuPd2P16+8V4gPHc5Y8H8vsyF9peV0Y= Received: by mx.zohomail.com with SMTPS id 1733960129560518.8553283750031; Wed, 11 Dec 2024 15:35:29 -0800 (PST) From: Antero Mejr <mail@HIDDEN> To: Lars Bilke <lars.bilke@HIDDEN> Subject: Re: bug#73649: OpenMPI + mpi4py broken: rank=0 In-Reply-To: <B416E6A1-3198-4433-AF5C-C3EDE3A2B7EA@HIDDEN> (Lars Bilke's message of "Tue, 10 Dec 2024 14:03:44 +0100") References: <B416E6A1-3198-4433-AF5C-C3EDE3A2B7EA@HIDDEN> Date: Wed, 11 Dec 2024 18:35:27 -0500 Message-ID: <871pydrdxc.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 73649 Cc: 73649 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -0.3 (/) Lars Bilke <lars.bilke@HIDDEN> writes: > The issue seems that openmpi is version 5.x but mpi4py is compiled against > version 4.x. That does fix it, thanks. Maybe packages built against MPI 4.x should be upgraded to the default MPI version, because the docs say: "The Open MPI v5.0.x series shared libraries are ABI compatible with Open MPI v4.0.x and v4.1.x, with a few exceptions for Fortran." https://docs.open-mpi.org/en/v5.0.x/version-numbering.html
bug-guix@HIDDEN:bug#73649; Package guix.
Full text available.Received: (at 73649) by debbugs.gnu.org; 10 Dec 2024 13:03:49 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue Dec 10 08:03:49 2024 Received: from localhost ([127.0.0.1]:57294 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1tKzu0-0003fp-Kk for submit <at> debbugs.gnu.org; Tue, 10 Dec 2024 08:03:48 -0500 Received: from mailgate5.ufz.de ([141.65.7.212]:38626 helo=mailgate.ufz.de) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <lars.bilke@HIDDEN>) id 1tKzty-0003fa-5D for 73649 <at> debbugs.gnu.org; Tue, 10 Dec 2024 08:03:47 -0500 Received: from imap.intranet.ufz.de (dcs1.intranet.ufz.de [141.65.125.135]) by mailgate.ufz.de (Mailgate5-UFZ) with ESMTP id C5A271602E7; Tue, 10 Dec 2024 14:03:44 +0100 (CET) MIME-version: 1.0 Content-transfer-encoding: 7BIT Content-type: text/plain; markup=markdown Received: from conversion-daemon.imap.intranet.ufz.de by imap.intranet.ufz.de (Oracle Communications Messaging Server 8.0.2.6.20200227 64bit (built Feb 27 2020)) id <0SOA0070048QBU00@HIDDEN>; Tue, 10 Dec 2024 14:03:44 +0100 (CET) Received: from smtp1.ufz.de ([141.65.7.217]) by imap.intranet.ufz.de (Oracle Communications Messaging Server 8.0.2.6.20200227 64bit (built Feb 27 2020)) with ESMTPS id <0SOA00HH44A84320@HIDDEN>; Tue, 10 Dec 2024 14:03:44 +0100 (CET) Received: from [100.88.251.128] (unknown [141.65.34.101]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by smtp1.ufz.de (smtp2-UFZ) with ESMTPSA id A07EEE004F; Tue, 10 Dec 2024 14:03:44 +0100 (CET) Date: Tue, 10 Dec 2024 14:03:44 +0100 From: Lars Bilke <lars.bilke@HIDDEN> Subject: Re: bug#73649: OpenMPI + mpi4py broken: rank=0 In-reply-to: <87ttdqjb82.fsf@HIDDEN> To: mail@HIDDEN Message-id: <B416E6A1-3198-4433-AF5C-C3EDE3A2B7EA@HIDDEN> X-Mailer: MailMate (1.14r5937) X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 73649 Cc: 73649 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) The issue seems that openmpi is version 5.x but mpi4py is compiled against version 4.x. You can get a consistent version by using this flag: --with-input=openmpi=openmpi@HIDDEN I could fix the issue with this call: guix shell python python-mpi4py openmpi \ --with-input=openmpi=openmpi@HIDDEN -- \ mpirun -n 12 python3 ...
bug-guix@HIDDEN:bug#73649; Package guix.
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Antero Mejr <mail@HIDDEN>:bug-guix@HIDDEN.
Full text available.bug-guix@HIDDEN:bug#73649; Package guix.
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