GNU bug report logs - #75742
[PATCH 00/27] Astro update 2025/01

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: guix-patches <at> gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 00/27] Astro update 2025/01
Date: Tue, 21 Jan 2025 23:15:16 +0000

Hi Guix!

Just after python-team branch has been merged, during DDoS to GNU
infrastructure, before Guix unconference on FOSDEM 2025 and go-team branch
merge on horizon - the first astrosoft for this year (it's 2025 already!) is
ready for review.

The main highlights:
- Stellarium is upgraded to it's latest commit due to issue with INDI
  (24.3->24.4-0.60b6bec)
- More lower level projects are finally packaged, some of them depend on
  HEALPix: python-pixell
- Finally, packaged ducc - a numerical library with binding in C++, Rust,
  Python, Julia and Fortran

The log:
 - added [6/6]
   - [X] python-agnpy :: Modelling Active Galactic Nuclei radiative processes
     with python
   - [X] python-ducc0 :: Distinctly Useful Code Collection
   - [X] python-mapsims :: Map based simulations software for CMB Experiments
   - [X] python-pixell :: Tectangular pixel map manipulation and harmonic
     analysis
   - [X] python-pysm3 :: Sky emission simulations for Cosmic Microwave
     Background experiments
   - [X] ska-sdp-func :: SDP Processing Function Library
 - updated [20/20]
   - [X] calceph :: 4.0.3->4.0.4
   - [X] python-ads :: 0.12.6->0.12.77
   - [X] python-asdf-compression :: 0.0.1-0.57cc7e7->0.0.1-1.7cfd07c
   - [X] python-astropy-iers-data :: 0.2024.11.18.0.35.2->0.2025.1.20.0.32.27
   - [X] python-astroquery :: 0.4.7->0.4.8
   - [X] python-ccdproc :: 2.4.2->2.4.3
   - [X] python-cdflib :: 1.3.2->1.3.3
   - [X] python-crds :: 12.0.8->12.0.9
   - [X] python-czml3 :: 1.0.2->2.3.0.
   - [X] python-ndcube :: 2.2.4->2.3.0
   - [X] python-poppy :: 1.1.1->1.1.2
   - [X] python-rad :: 0.22.0->0.23.0
   - [X] python-roman-datamodels :: 0.22.0->0.23.0
   - [X] python-spectral-cube :: 0.6.5->0.6.6
   - [X] python-statmorph :: 0.6.0->0.6.1
   - [X] python-numexpr :: 2.8.4->2.9.0; starting from 2.10.0, NumPy 2+ is
     required
   - [X] python-sunpy-soar :: 1.10->1.11.0
   - [X] python-viresclient :: 0.12.0->0.12.1
   - [X] sextractor :: 2.28.0->2.28.2
   - [X] stellarium :: 24.3->24.4-0.60b6bec

Hand of help is need here.
 - issues [5/5][100%]
   - [X] python-astropy :: would be upgraded from 6.1.7 to 7.0.0; Python3.11
     is required
   - [X] python-stcal :: would be upgraded from 1.10.0 to 1.11.0; failed to
     build with numpy 1.24
     - [X] python-jwst
     - [X] python-jwst-reffiles
   - [X] python-naima :: would be upgraded from 0.10.0 to 0.10.2; NumPy 2 or
     later
   - [X] python-photutils :: would be upgraded from 1.10.0 to 1.11.0; NumPy
     1.25+
   - [X] python-poliastro :: failed to build, not maintained there is an
     alternative fork to wich we may migrate
     <https://github.com/pleiszenburg/hapsira>

The build stats for x86_64-linux:

#+begin_src shell
> ./pre-inst-env guix build calceph python-ads python-asdf-compression
  python-astropy-iers-data python-astroquery python-ccdproc python-cdflib
  python-crds python-czml3 python-ducc0 python-mapsims python-ndcube
  python-numexpr python-pixell python-poppy python-pysm3 python-rad
  python-roman-datamodels python-so-noise-models python-spectral-cube
  python-statmorph python-sunpy-soar python-viresclient sextractor ska-sdp-func
  stellarium

/gnu/store/8117y20155rrlxdpdwf1fv0378jq5lf3-calceph-4.0.4
/gnu/store/vlsp69is3zl9fygf29if310hqrn9cqn7-python-ads-0.12.7
/gnu/store/7q6cy40d4n9j7qq6irhvqp50syrhw6qy-python-asdf-compression-0.0.1-1.7cfd07c
/gnu/store/3wby3h12g8rs3gp001s32g50r71ssn8i-python-astropy-iers-data-0.2025.1.20.0.32.27
/gnu/store/xisipx93la5v021sfkkp7mhjb5m6b6ay-python-astroquery-0.4.8
/gnu/store/3fm9ic2sc9y1zvm0dp57yh1k8fwkskcg-python-ccdproc-2.4.3
/gnu/store/rqzj1h5r6fj82ycw77c0576jac1c4lrs-python-cdflib-1.3.3
/gnu/store/mrabslkj2cdrwfmikjas5vkxgb5af3nw-python-crds-12.0.9
/gnu/store/iwlin46pkd0kh8ihf6iakcbmrg2xp1sc-python-czml3-2.3.0
/gnu/store/bbdhcysdn39m205mm52vsnpvyck1xwiz-python-ducc0-0.36.0
/gnu/store/x7ywqh573xs3jzj3kfhll4f9blagwcgk-python-mapsims-2.6.0
/gnu/store/aj7xda4624g26f2varkjj731z2fvwzwd-python-ndcube-2.3.0
/gnu/store/s5zqqdri6969ixbxmw66354kh15yqmyx-python-numexpr-2.9.0
/gnu/store/pscp7qm569g35035nfcnrjym8qa7m681-python-pixell-0.28.0
/gnu/store/ww7zm8pc9wxvgkmg3askhk4pv9yd1ln6-python-poppy-1.1.2
/gnu/store/9ya2i65kq0jqg9pa39wqfn4ybrd644kw-python-pysm3-3.4.1a1
/gnu/store/9y40q58hmcdmkaz84ca82ndgc7bnljk5-python-rad-0.23.0
/gnu/store/rg6ks17zijb0yy40psxwq2ihlvjyb703-python-roman-datamodels-0.23.0
/gnu/store/d1qig8wq4l4mnk7x2zzc3x96g0dxirn7-python-so-noise-models-0.0.0-0.fac881e
/gnu/store/3f63pv6xx1lm3pygbqs6z4955pw2nqhq-python-spectral-cube-0.6.6
/gnu/store/3hzg0m82qn3p4d3bvzalih36b5cbn6gk-python-statmorph-0.6.1
/gnu/store/hmdjc16wsn9mnw935jxs51jqg1bcbsvj-python-sunpy-soar-1.11.0
/gnu/store/6wznz1xldpcmqjj78czj7c2h5dxvrlbl-python-viresclient-0.12.1
/gnu/store/2vaks8h599zyzk6qyxc4ln47ldxd71vw-sextractor-2.28.2
/gnu/store/2iwfw2zw99n0sca6j8pkyzdcc5hkfh5z-ska-sdp-func-1.2.2
/gnu/store/86ddzf3xvi8r8sx115na7dsmzk14a190-stellarium-24.4-0.60b6bec
#+end_src

#+begin_example
> ./pre-inst-env guix refresh --list-dependent calceph python-ads
python-asdf-compression python-astropy-iers-data python-astroquery
python-ccdproc python-cdflib python-crds python-czml3 python-ducc0
python-mapsims python-ndcube python-numexpr python-pixell python-poppy
python-pysm3 python-rad python-roman-datamodels python-so-noise-models
python-spectral-cube python-statmorph python-sunpy-soar python-viresclient
sextractor ska-sdp-func stellarium

Building the following 59 packages would ensure 146 dependent packages are
rebuilt: python-zodipy <at> 1.1.0 python-spisea <at> 2.1.13 python-cesium <at> 0.12.1
python-naima <at> 0.10.0 python-kanon <at> 0.6.6 python-sncosmo <at> 2.11.2
python-halotools <at> 0.9.2 python-coolest <at> 0.1.9 scamp <at> 2.10.0
python-regularizepsf <at> 1.0.2 python-holodeck <at> 1.5.2
python-asdf-compression <at> 0.0.1-1.7cfd07c python-statmorph <at> 0.6.1
python-asdf-zarr <at> 0.0.4 ginga-qt5 <at> 5.2.0 python-astroplan <at> 0.10.1
python-astroalign <at> 2.6.1 python-sunkit-image <at> 0.5.1 python-poliastro <at> 0.17.0
python-scikit-allel <at> 1.3.13 python-scikit-survival <at> 0.22.2-1.bceb53e
python-viresclient <at> 0.12.1 variant-tools <at> 3.1.2 python-hicexplorer <at> 3.7.4
python-fanc <at> 0.9.28 python-hotspotsc <at> 1.1.1 python-celltypist <at> 1.6.2
python-muon <at> 0.1.6 scregseg <at> 0.1.3 r-doubletcollection <at> 1.1.0-1.c0d62f1
python-ikarus <at> 0.0.2 python-multivelo <at> 0.1.2 python-episcanpy <at> 0.4.0
python-liana-py <at> 1.4.0 python-metacells <at> 0.9.5 python-pynrrd <at> 1.0.0
python-sphinx-autodoc-typehints <at> 1.23.0 python-cellbender <at> 0.2.2 onionshare <at> 2.6
python-lsp-black <at> 1.3.0 python-pylsp-mypy <at> 0.6.9 python-pandera <at> 0.18.0
python-modin <at> 0.32.0 python-brian2tools <at> 0.3 python-gpy <at> 1.13.1
python-deepdish <at> 0.3.7 python-omero-py <at> 5.13.1 python-pyrodigal <at> 3.3.0
python-pyct <at> 0.5.0 python-mapsims <at> 2.6.0 python-webbpsf <at> 1.5.0
python-acstools <at> 3.7.2 python-jwst-reffiles <at> 1.0.1 python-sbpy <at> 0.5.0
python-pyxsim <at> 4.4.2 python-yt-astro-analysis <at> 1.1.3 python-glue-qt <at> 0.3.2
python-glue-astronomy <at> 0.10.0 python-radiospectra <at> 0.6.0c
#+end_example

Sharlatan Hellseher (27):
  gnu: calceph: Update to 4.0.4.
  gnu: sextractor: Update to 2.28.2.
  gnu: stellarium: Update to 24.4-0.60b6bec.
  gnu: python-ads: Update to 0.12.7.
  gnu: python-asdf-compression: Update to 0.0.1-1.7cfd07c.
  gnu: python-astropy-iers-data: Update to 0.2025.1.20.0.32.27.
  gnu: python-astroquery: Update to 0.4.8.
  gnu: python-ccdproc: Update to 2.4.3.
  gnu: python-cdflib: Update to 1.3.3.
  gnu: python-czml3: Update to 2.3.0.
  gnu: python-crds: Update to 12.0.9.
  gnu: python-ndcube: Update to 2.3.0.
  gnu: python-numexpr: Update to 2.9.0.
  gnu: python-poppy: Update to 1.1.2.
  gnu: python-rad: Update to 0.23.0.
  gnu: python-roman-datamodels: Update to 0.23.0.
  gnu: Add python-pvextractor-bootstrap.
  gnu: python-spectral-cube: Update to 0.6.6.
  gnu: python-statmorph: Update to 0.6.1.
  gnu: python-sunpy-soar: Update to 1.11.0.
  gnu: python-viresclient: Update to 0.12.1.
  gnu: Add ska-sdp-func.
  gnu: Add python-ducc0.
  gnu: Add python-pixell.
  gnu: Add python-pysm3.
  gnu: Add python-so-noise-models.
  gnu: Add python-mapsims.

 gnu/packages/astronomy.scm  | 568 ++++++++++++++++++++++++++++--------
 gnu/packages/maths.scm      |  40 +++
 gnu/packages/python-xyz.scm |  19 +-
 3 files changed, 504 insertions(+), 123 deletions(-)


base-commit: ae217b7159ee202229eab39cd49adb9254cd4a96
-- 
2.47.1

Message #8 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 01/27] gnu: calceph: Update to 4.0.4.
Date: Tue, 21 Jan 2025 23:21:49 +0000

* gnu/packages/astronomy.scm (calceph): Update to 4.0.4.

Change-Id: Idffb093376dc4c5d9bc9b3691dccafeb9ffa7e46
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index f2d5bb2fe92..4512493402f 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -262,7 +262,7 @@ (define-public aoflagger
 (define-public calceph
   (package
     (name "calceph")
-    (version  "4.0.3")
+    (version  "4.0.4")
     (source
      (origin
        (method git-fetch)
@@ -271,7 +271,7 @@ (define-public calceph
              (commit (string-append name "_"
                                     (string-replace-substring version "." "_")))))
        (sha256
-        (base32 "1985ihkpxr0vra5xr664yxg9llby88j3zkbhqn38lh8wn0gwivj9"))
+        (base32 "0cs34iwrgja7f47l8cvpxzgljxay5x4bx80hdpclaksilysvlyk0"))
        (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (native-inputs
-- 
2.47.1

Message #11 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 02/27] gnu: sextractor: Update to 2.28.2.
Date: Tue, 21 Jan 2025 23:21:50 +0000

* gnu/packages/astronomy.scm (sextractor): Update to 2.28.2.

Change-Id: I1af48d5656e8f5a8425f6e8928a86742f2620a74
---
 gnu/packages/astronomy.scm | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4512493402f..2bd8fecf754 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6823,7 +6823,7 @@ (define-public scamp
 (define-public sextractor
   (package
     (name "sextractor")
-    (version "2.28.0")
+    (version "2.28.2")
     (source
      (origin
        (method git-fetch)
@@ -6832,12 +6832,8 @@ (define-public sextractor
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "15v7brjiraj2rdyxiidcgb58b3dqzdd363j31cjrfqhd1wc8ii5j"))))
+        (base32 "05i2q1665y4hv0dymgcwraq7ixwr706gwfb88vyvi8hazgym2iaq"))))
     (build-system gnu-build-system)
-    ;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing
-    ;; due to missing shared library which required on configure phase. Switch
-    ;; build to use `openblas' instead. It requires FFTW with single precision
-    ;; `fftwf'.
     (arguments
      (list
       #:configure-flags
-- 
2.47.1

Message #14 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 03/27] gnu: stellarium: Update to 24.4-0.60b6bec.
Date: Tue, 21 Jan 2025 23:21:51 +0000

* gnu/packages/astronomy.scm (stellarium): Update to 24.4-0.60b6bec.
[source]: Use the latest commit containing the build fix.
[inputs]: Remove indi, add indi-2.0.

Change-Id: Ic35bb032bd56d1a00e7de5d6de57946e25325a69
---
 gnu/packages/astronomy.scm | 17 +++++++++++------
 1 file changed, 11 insertions(+), 6 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 2bd8fecf754..545a7434e69 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -7127,18 +7127,23 @@ (define-public stackistry
     (license license:gpl3+)))
 
 (define-public stellarium
-  (package
+  ;; XXX fatal error: libs/indiclient/baseclient.h: No such file or directory
+  ;; <https://github.com/Stellarium/stellarium/issues/4019>, using the latest
+  ;; commit.
+  (let ((commit "60b6becd4147dd7c731ed0be790b1a30cdc0039b")
+        (revision "0"))
+    (package
     (name "stellarium")
-    (version "24.3")
+    (version (git-version "24.4" revision commit))
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/Stellarium/stellarium")
-             (commit (string-append "v" version))))
+             (commit commit)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0wwaddbqcia6jaz3lc1cf63pvi9bqj2cglp428i77jlfs3dfj45j"))))
+        (base32 "1i00f63pmyy55mwagab4pv419agzmg2c4075hc8cgbhhhfr6gm8d"))))
     (build-system cmake-build-system)
     ;; TODO: Complete documentation build and split into dedicated outputs.
     (arguments
@@ -7162,7 +7167,7 @@ (define-public stellarium
     (inputs
      (list calcmysky-qt5
            gpsd
-           indi
+           indi-2.0
            libnova
            nlopt
            openssl
@@ -7192,7 +7197,7 @@ (define-public stellarium
 3D, just like what you see with the naked eye, binoculars, or a telescope.  It
 can be used to control telescopes over a serial port for tracking celestial
 objects.")
-    (license license:gpl2+)))
+    (license license:gpl2+))))
 
 (define-public stuff
   (package
-- 
2.47.1

Message #17 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 08/27] gnu: python-ccdproc: Update to 2.4.3.
Date: Tue, 21 Jan 2025 23:21:56 +0000

* gnu/packages/astronomy.scm (python-ccdproc): Update to 2.4.3.
[native-inputs]: Add python-hatch-vcs and python-hatchling.

Change-Id: I28517fd7e02dbfce0655a528b6aa90ad0ef82500
---
 gnu/packages/astronomy.scm | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5970421ae30..0cecabc4b8b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1998,16 +1998,18 @@ (define-public python-casa-formats-io
 (define-public python-ccdproc
   (package
     (name "python-ccdproc")
-    (version "2.4.2")
+    (version "2.4.3")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "ccdproc" version))
        (sha256
-        (base32 "14faivm9nihpdwzg0jx1c9zr7jk22gjfjw78raq6h63ypl10i6yx"))))
+        (base32 "1crc565n0x1krd59cjm2vnmzyi0p83yc8vpxq6hldj7vdnqgl8yq"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-memory-profiler
+     (list python-hatch-vcs
+           python-hatchling
+           python-memory-profiler
            python-pytest-astropy))
     (propagated-inputs
      (list python-astropy
-- 
2.47.1

Message #20 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 06/27] gnu: python-astropy-iers-data: Update to
 0.2025.1.20.0.32.27.
Date: Tue, 21 Jan 2025 23:21:54 +0000

* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to 0.2025.1.20.0.32.27.
[native-inptus]: Remove python-hypothesis.

Change-Id: I75bd9bfd5199741c3df98240439ef2d5302e6510
---
 gnu/packages/astronomy.scm | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a80c6fee941..9dc026ece3a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3520,19 +3520,18 @@ (define-public python-astropy-healpix
 (define-public python-astropy-iers-data
   (package
     (name "python-astropy-iers-data")
-    (version "0.2024.11.18.0.35.2")
+    (version "0.2025.1.20.0.32.27")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "astropy_iers_data" version))
        (sha256
-        (base32 "1n6j5pa5whcpx2hn7n78a7k2xllwgj5gq4lkb9jimrdvx7p0hl5i"))))
+        (base32 "1r4vdg90kk4d84vd0gjhnqlwazccsa1w53lj0d1dlkfnbhlkdfmi"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f)) ; no tests
     (native-inputs
-     (list python-hypothesis
-           python-setuptools
+     (list python-setuptools
            python-setuptools-scm
            python-wheel))
     (home-page "https://docs.astropy.org/en/latest/utils/iers.html")
-- 
2.47.1

Message #23 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 21/27] gnu: python-viresclient: Update to 0.12.1.
Date: Tue, 21 Jan 2025 23:22:09 +0000

* gnu/packages/astronomy.scm (python-viresclient): Update to 0.12.1.

Change-Id: I3b46ba1c97e4fcda7338c1234850c52c223c62db
---
 gnu/packages/astronomy.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 85ff0dd9322..f1ae519c25c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6467,16 +6467,17 @@ (define-public python-tweakwcs
 (define-public python-viresclient
   (package
     (name "python-viresclient")
-    (version "0.12.0")
+    (version "0.12.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "viresclient" version))
        (sha256
-        (base32 "1y3g59yh3ic5288f2n9r6bj7b0w3vfdfcnqfg1va0z7w9jnk55j1"))))
+        (base32 "04micg72jag8zyvszc9hhi5p0zr8j3k93chhd5gkl20bvk69l3fp"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-flit-core python-pytest))
+     (list python-flit-core
+           python-pytest))
     (propagated-inputs
      (list python-cdflib
            python-jinja2
-- 
2.47.1

Message #26 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 11/27] gnu: python-crds: Update to 12.0.9.
Date: Tue, 21 Jan 2025 23:21:59 +0000

* gnu/packages/astronomy.scm (python-crds): Update to 12.0.9.

Change-Id: I107a874f3e2c8d9a7e019fc592c8d67d1d4f2810
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 1cb57aa09fb..5ad39ff879c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2146,13 +2146,13 @@ (define-public python-cosmopy
 (define-public python-crds
   (package
     (name "python-crds")
-    (version "12.0.8")
+    (version "12.0.9")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "crds" version))
        (sha256
-        (base32 "09kdpaywj88n31jard4wbqmb9132qf6fk0ar2z6ca9vswavivfk8"))))
+        (base32 "0cf6pr6lixqhmvig9ajhh68yd1ri7dninamakvs728mjd5nswmw3"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.47.1

Message #29 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 13/27] gnu: python-numexpr: Update to 2.9.0.
Date: Tue, 21 Jan 2025 23:22:01 +0000

* gnu/packages/python-xyz.scm (python-numexpr): Update to 2.9.0.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: I352536175d71e29c55c9ad71a96dbfd2b9b66759
---
 gnu/packages/python-xyz.scm | 19 ++++++++++++++-----
 1 file changed, 14 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 41735a78ead..14ceb3b0fa5 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -9955,16 +9955,25 @@ (define-public python-numpydoc
 (define-public python-numexpr
   (package
     (name "python-numexpr")
-    (version "2.8.4")
+    (version "2.9.0") ; starting from 2.10.0, NumPy 2+ is required
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "numexpr" version))
        (sha256
-        (base32
-         "0iv1h1lvry5vmzqyvwxfbckyhzm1vbb1bmhmj4dnj64d84vjahym"))))
-    (build-system python-build-system)
-    (arguments `(#:tests? #f))          ; no tests included
+        (base32 "1w5ampdamlwj8ix1ipzxngmrlqpnmcmk95gbi6839kijqkv147gj"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'build-extensions
+            (lambda _
+              (invoke "python" "setup.py" "build_ext" "--inplace"))))))
+    (native-inputs
+     (list python-pytest
+           python-setuptools
+           python-wheel))
     (propagated-inputs
      (list python-numpy))
     (home-page "https://github.com/pydata/numexpr")
-- 
2.47.1

Message #32 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 23/27] gnu: Add python-ducc0.
Date: Tue, 21 Jan 2025 23:22:11 +0000

* gnu/packages/maths.scm (python-ducc0): New variable.

Change-Id: Icb8990b32d25f4ad9bd2391f7745b6c298758efa
---
 gnu/packages/maths.scm | 40 ++++++++++++++++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index ed9c7bfa0e9..f702603d3d4 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -4045,6 +4045,46 @@ (define-public python-cvxopt
 programming language.")
     (license license:gpl3+)))
 
+(define-public python-ducc0
+  (package
+    (name "python-ducc0")
+    (version "0.36.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://gitlab.mpcdf.mpg.de/mtr/ducc")
+             (commit (string-append
+                      "ducc0_" (string-replace-substring version "." "_")))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1pfj7k5s3d237r7diqrd7cgvf8p5zms6pp64nfdildx49kwggwab"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags #~(list "python/test")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'set-env
+            (lambda _
+              (setenv "DUCC0_OPTIMIZATION" "portable-strip"))))))
+    (native-inputs
+     (list pybind11
+           python-pytest
+           python-setuptools
+           python-wheel))
+    (propagated-inputs
+     (list python-numpy))
+    (home-page "https://gitlab.mpcdf.mpg.de/mtr/ducc")
+    (synopsis "Distinctly Useful Code Collection")
+    (description
+     "This package provides a collection of basic programming tools for
+numerical computation, including Fast Fourier Transforms, Spherical Harmonic
+Transforms, non-equispaced Fourier transforms, as well as some concrete
+applications like 4pi convolution on the sphere and gridding/degridding of
+radio interferometry data.")
+    (license license:gpl2+)))
+
 (define-public python-kiwisolver
   (package
     (name "python-kiwisolver")
-- 
2.47.1

Message #35 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 14/27] gnu: python-poppy: Update to 1.1.2.
Date: Tue, 21 Jan 2025 23:22:02 +0000

* gnu/packages/astronomy.scm (python-poppy): Update to 1.1.2.
[propagated-inputs]: Add python-numexpr.
[native-inputs]: Remove python-h5py, python-pandas, python-scikit-image, and
python-sphinx; add python-wheel.

Change-Id: I87bd37fc3001d6f341ff7b2751d15533f6a0295d
---
 gnu/packages/astronomy.scm | 32 +++++++++++++++-----------------
 1 file changed, 15 insertions(+), 17 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4e1b091bb21..4cc69af058e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4386,36 +4386,34 @@ (define-public python-poliastro
 (define-public python-poppy
   (package
     (name "python-poppy")
-    (version "1.1.1")
-    (source (origin
-              (method url-fetch)
-              (uri (pypi-uri "poppy" version))
-              (sha256
-               (base32
-                "0s8rb61q8dz66s8d3qg44kb6bb5gi40zl41ik9wyccgb4kyf3brp"))))
+    (version "1.1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "poppy" version))
+       (sha256
+        (base32 "0mvnd9rlglb1cqhaavd2lyxnvi4xmc133x50rzzlh00xn0gyxgfq"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:test-flags
       #~(list "--numprocesses" (number->string (parallel-job-count)))))
+    (native-inputs
+     (list python-docutils
+           python-pytest
+           python-pytest-astropy
+           python-pytest-xdist
+           python-setuptools-scm
+           python-wheel))
     (propagated-inputs
      ;; XXX: With python-synphot (marked as optional) package added to the list
      ;; it tries to download from remote host during tests and fails. Overall
      ;; tests take up to 5-8min to pass.
      (list python-astropy
            python-matplotlib
+           python-numexpr
            python-numpy
            python-scipy))
-    (native-inputs
-     (list python-docutils
-           python-h5py
-           python-pandas
-           python-pytest
-           python-pytest-astropy
-           python-pytest-xdist
-           python-scikit-image
-           python-setuptools-scm
-           python-sphinx))
     (home-page "https://poppy-optics.readthedocs.io/")
     (synopsis "Physical Optics Propagation in Python")
     (description
-- 
2.47.1

Message #38 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 16/27] gnu: python-roman-datamodels: Update to 0.23.0.
Date: Tue, 21 Jan 2025 23:22:04 +0000

* gnu/packages/astronomy.scm (python-roman-datamodels): Update to 0.23.0.
[propagated-inputs]: Remove python-asdf-3 and python-psutil; add python-asdf,
python-asdf-standard, and python-lz4.

Change-Id: I7fc02f43be6eb29d3c492325628e7e759b7e8254
---
 gnu/packages/astronomy.scm | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index dc0938fb550..fde482f0868 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6296,13 +6296,13 @@ (define-public python-radiospectra
 (define-public python-roman-datamodels
   (package
     (name "python-roman-datamodels")
-    (version "0.22.0")
+    (version "0.23.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "roman_datamodels" version))
        (sha256
-        (base32 "0n50pgs7y0nmrx86qlny27mas2zgx708gm3xfkl7an2nwkdfwfld"))))
+        (base32 "1r7l93z89d93kkpfcxcy12g1ijy2q942j4g4s1d62rzdcz11gann"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -6322,12 +6322,13 @@ (define-public python-roman-datamodels
            python-setuptools-scm
            python-wheel))
     (propagated-inputs
-     (list python-asdf-3
+     (list python-asdf
            python-asdf-astropy
+           python-asdf-standard
            python-astropy
            python-gwcs
+           python-lz4
            python-numpy
-           python-psutil
            python-rad))
     (home-page "https://github.com/spacetelescope/roman_datamodels")
     (synopsis "Roman Datamodels Support")
-- 
2.47.1

Message #41 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 10/27] gnu: python-czml3: Update to 2.3.0.
Date: Tue, 21 Jan 2025 23:21:58 +0000

The project's maintainer has been changed, see
<https://github.com/poliastro/czml3/issues/112>.

* gnu/packages/astronomy.scm (python-czml3): Update to 2.3.0.
[source] <url>: Adjust it as project's owner has been changed.
[native-inputs]: Remove python-astropy-minimal, and python-pytest-mypy.
[propagated-inputs]: Remove python-attrs. Add python-numpy,
python-pydantic-2, python-strenum, and python-typing-extensions.
[home-page]: Adjust it as project's owner has been changed.
[license]: Likewise.

Change-Id: I71116eaf53ce87ff72a4f238362cd2669e6e9ddb
---
 gnu/packages/astronomy.scm | 23 +++++++++++++----------
 1 file changed, 13 insertions(+), 10 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ff879490409..1cb57aa09fb 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2193,34 +2193,37 @@ (define-public python-crds
 (define-public python-czml3
   (package
     (name "python-czml3")
-    (version "1.0.2")
+    (version "2.3.0")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
-             (url "https://github.com/poliastro/czml3")
+             ;; Maintainer of the project has been changed, see
+             ;; <https://github.com/poliastro/czml3/issues/112>.
+             (url "https://github.com/Stoops-ML/czml3")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0gsdffn5w7j1aridvmx4xh6axvmbmqjwawacc8fnshpcyh4md5pn"))))
+        (base32 "1125239knl4w2njnrqvdc5qzjvq80zlf247z72za7qz6k0rnv3rw"))))
     (build-system pyproject-build-system)
     (native-inputs
-     (list python-astropy-minimal
-           python-pytest
-           python-pytest-mypy
+     (list python-pytest
            python-setuptools
            python-wheel))
     (propagated-inputs
-     (list python-attrs
-           python-dateutil
+     (list python-dateutil
+           python-numpy
+           python-pydantic-2
+           python-strenum
+           python-typing-extensions
            python-w3lib))
-    (home-page "https://github.com/poliastro/czml3")
+    (home-page "https://github.com/Stoops-ML/czml3")
     (synopsis "Python library to write CZML")
     (description
      "CZML3 is a Python library to write CZML, a JSON format for describing
 a time-dynamic graphical scene, primarily for display in a web browser running
 Cesium.")
-    (license license:expat)))
+    (license license:bsd-3)))
 
 (define-public python-drizzle
   (package
-- 
2.47.1

Message #44 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 20/27] gnu: python-sunpy-soar: Update to 1.11.0.
Date: Tue, 21 Jan 2025 23:22:08 +0000

* gnu/packages/astronomy.scm (python-sunpy-soar): Update to 1.11.0.
[source] <uri>: Adjust it as PyPI archive name has been changed.
[arguments] <test-flags>: Skip more tests.
[propagated-inputs]: Add python-astropy, python-matplotlib, and
python-requests.
[native-inputs]: Add python-pytest-doctestplus, python-responses,
python-setuptools, and python-wheel.

Change-Id: Icf3a4450f6f7898b85d93f83f7ca40c412c12c6f
---
 gnu/packages/astronomy.scm | 56 ++++++++++++++++++++++++++------------
 1 file changed, 38 insertions(+), 18 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ea9cbcd79b7..85ff0dd9322 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4783,29 +4783,42 @@ (define-public python-sunpy
 (define-public python-sunpy-soar
   (package
     (name "python-sunpy-soar")
-    (version "1.10")
+    (version "1.11.0")
     (source
      (origin
        (method url-fetch)
-       (uri (pypi-uri "sunpy-soar" version))
+       (uri (pypi-uri "sunpy_soar" version))
        (sha256
-        (base32 "0pb7dr06n20hdhlqf8npb4j1qb5034cgwqi3iciqdi1wxyy5pjc6"))))
+        (base32 "015pc6m7bdmgyw2inmjv84fgsjj8x90f91gphyv9ql4xn6yspnc2"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:test-flags
-      ;; Disabe tests requireing network access.
-      #~(list "-k" (string-append
-                    "not test_search"
-                    " and not test_search_low_latency"
-                    " and not test_insitu_search"
-                    " and not test_no_results"
-                    " and not test_no_instrument"
-                    " and not test_download_path"
-                    " and not test_search_soop"
-                    " and not test_when_soar_provider_passed"
-                    " and not test_when_sdac_provider_passed"
-                    " and not test_when_wrong_provider_passed"))
+      ;; Disable tests requiring network access to download test data from
+      ;; <http://soar.esac.esa.int> and <http://docs.virtualsolar.org>.
+      #~(list "-k" (string-join
+                    (list "not test_distance_out_of_bounds_warning"
+                          "test_distance_search_insitu"
+                          "test_distance_search_remote_sensing"
+                          "test_distance_time_search"
+                          "test_download_path"
+                          "test_insitu_search"
+                          "test_invalid_detector"
+                          "test_no_instrument"
+                          "test_no_results"
+                          "test_search"
+                          "test_search_detector_instrument_dimension_2"
+                          "test_search_detector_instrument_dimension_4"
+                          "test_search_low_latency"
+                          "test_search_soop"
+                          "test_search_wavelength_detector_column"
+                          "test_wavelength_column_wavelength_exists"
+                          "test_wavelength_range"
+                          "test_wavelength_single"
+                          "test_when_sdac_provider_passed"
+                          "test_when_soar_provider_passed"
+                          "test_when_wrong_provider_passed")
+                    " and not "))
       #:phases
       #~(modify-phases %standard-phases
           (add-before 'check 'set-home-env
@@ -4813,10 +4826,17 @@ (define-public python-sunpy-soar
               ;; Tests require HOME to be set.
               ;;  Permission denied: '/homeless-shelter'
               (setenv "HOME" "/tmp"))))))
-    (propagated-inputs
-     (list python-sunpy))
     (native-inputs
-     (list python-pytest))
+     (list python-pytest
+           python-pytest-doctestplus
+           python-responses
+           python-setuptools
+           python-wheel))
+    (propagated-inputs
+     (list python-astropy
+           python-matplotlib
+           python-requests
+           python-sunpy))
     (home-page "https://docs.sunpy.org/projects/soar")
     (synopsis "Solar Orbiter Archive plugin for SunPy")
     (description
-- 
2.47.1

Message #47 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 25/27] gnu: Add python-pysm3.
Date: Tue, 21 Jan 2025 23:22:13 +0000

* gnu/packages/astronomy.scm (python-pysm3): New variable.

Change-Id: I5d3ff6e14af22ff3ef0e5e95fea4eb9842deb045
---
 gnu/packages/astronomy.scm | 82 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 82 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c4d7936e3dd..0797c76a02f 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3065,6 +3065,88 @@ (define-public python-pysiril
 natively in Siril.")
     (license license:gpl3)))
 
+(define-public python-pysm3
+  (package
+    (name "python-pysm3")
+    (version "3.4.1a1")
+    (source
+     (origin
+       (method git-fetch) ; no tests data in the PyPI tarball
+       (uri (git-reference
+             (url "https://github.com/galsci/pysm")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0rp22d1ckln9j490ga5snk0xb28qal1i10m4kqmhg7sfkw7dnnzs"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; Tests requiring additinal FITS files.
+      ;; <https://healpy.github.io/healpy-data>
+      ;; <https://portal.nersc.gov/project/cmb/pysm-data>
+      #~(list "-k" (string-join
+                    (list "not test_model"
+                          "test_bandpass_unit_conversion_CMB2MJysr"
+                          "test_bandpass_unit_conversion_MJysr2KRJ"
+                          "test_cmb_lensed"
+                          "test_cmb_map"
+                          "test_cmb_map_bandpass"
+                          "test_co"
+                          "test_co_model"
+                          "test_dust_model"
+                          "test_model_d12"
+                          "test_d10_vs_d11"
+                          "test_dust_model_353"
+                          "test_gnilc_857"
+                          "test_highfreq_dust_model"
+                          "test_presmoothed"
+                          "test_sky_max_nside"
+                          "test_sky_max_nside_highres"
+                          "test_read_map_unit"
+                          "test_read_map_unit_dimensionless"
+                          "test_healpix_output_nside"
+                          "test_smoothing_healpix"
+                          "test_smoothing_healpix_beamwindow"
+                          "test_s6_vs_s5"
+                          "test_synch_44"
+                          "test_synch_model_noscaling"
+                          "test_synch_model_s7_44"
+                          "test_synch_model_s7_noscaling"
+                          "test_synchrotron_model"
+                          "test_bandpass_unit_conversion")
+                    " and not "))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'set-version
+            (lambda _
+              (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))))))
+    (native-inputs
+     (list nss-certs-for-test
+           python-hatch-vcs
+           python-hatchling
+           python-netcdf4
+           python-pixell
+           python-psutil
+           python-pytest
+           python-pytest-astropy
+           python-setuptools-scm
+           python-xarray))
+    (propagated-inputs
+     (list python-astropy
+           python-healpy
+           python-numba
+           python-toml))
+    (home-page "https://pysm3.readthedocs.io/")
+    (synopsis "Sky emission simulations for Cosmic Microwave Background experiments")
+    (description
+     "PySM generates full-sky simulations of Galactic emissions in intensity
+and polarization relevant to @acronym{Cosmic Microwave Background, CMB}
+experiments.  It is a large refactor of
+@url{https://github.com/bthorne93/PySM_public, PySM 2} focused on reducing
+memory usage, improving performance and run in parallel with MPI.")
+    (license license:bsd-3)))
+
 (define-public python-pyxsim
   (package
     (name "python-pyxsim")
-- 
2.47.1

Message #50 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 17/27] gnu: Add python-pvextractor-bootstrap.
Date: Tue, 21 Jan 2025 23:22:05 +0000

* gnu/packages/astronomy.scm (python-pvextractor-bootstrap): New variable.

Change-Id: I2020fdb58b325056b41ea1038fe79c245c3fec60
---
 gnu/packages/astronomy.scm | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index fde482f0868..aa9c9d2b111 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2982,6 +2982,19 @@ (define-public python-pvextractor
 position-frequency slice.")
     (license license:bsd-3)))
 
+(define-public python-pvextractor-bootstrap
+  (hidden-package
+   (package
+     (inherit python-pvextractor)
+     (arguments
+      (list #:tests? #f
+            #:phases #~(modify-phases %standard-phases
+                         (delete 'sanity-check))))
+     (propagated-inputs '())
+     (native-inputs
+      (list python-setuptools
+            python-wheel)))))
+
 (define-public python-pysiril
   (package
     (name "python-pysiril")
-- 
2.47.1

Message #53 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 27/27] gnu: Add python-mapsims.
Date: Tue, 21 Jan 2025 23:22:15 +0000

* gnu/packages/astronomy.scm (python-mapsims): New variable.

Change-Id: I2bc0941d80d2e0be81ec6a05636c59fc2edc0479
---
 gnu/packages/astronomy.scm | 65 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 65 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 2c549c43bb8..5eb98834642 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2935,6 +2935,71 @@ (define-public python-holodeck
 observationally-derived galaxy merger catalogs.")
     (license license:expat)))
 
+(define-public python-mapsims
+  (package
+    (name "python-mapsims")
+    (version "2.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "mapsims" version))
+       (sha256
+        (base32 "15mkdbmcys42vh46wzvaw8avx54dicav3dazflpfr634jw9bd8hs"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; Tests requiring additinal FITS files.
+      ;; <https://portal.nersc.gov/project/cmb>
+      ;; <https://portal.nersc.gov/project/sobs>
+      #~(list "-k" (string-join
+                    (list "not test_noise_simulator[ST0]"
+                          "test_noise_simulator[ST3]"
+                          "test_homogeneous_noise"
+                          "test_from_classes_car_healpix"
+                          "test_from_config_v02"
+                          "test_from_classes"
+                          "test_s4sim_202222_ame_high")
+                    " and not "))
+      #:phases
+      #~(modify-phases %standard-phases
+         (add-after 'unpack 'relax-requirements
+           (lambda _
+             (substitute* "pyproject.toml"
+               ;; pixell==0.17.3
+               (("==0.17.3") ">=0.17.3")))))))
+    (native-inputs
+     (list nss-certs-for-test
+           python-flit-core
+           python-nbformat
+           python-nbval
+           python-pytest
+           python-pytest-astropy))
+    (propagated-inputs
+     (list python-astropy
+           python-healpy
+           python-numpy
+           python-pixell
+           python-pysm3
+           python-pyyaml
+           python-so-noise-models
+           python-toml))
+    (home-page "https://github.com/galsci/mapsims")
+    (synopsis "Map based simulations software for CMB Experiments")
+    (description
+     "This package implements a functionality to produce map based simulations
+for the @url{https://simonsobservatory.org/, Simons Observatory} or other CMB
+experiments.  It creates simulated maps in HEALPix and CAR pixelization based
+on:
+@itemize
+@item foreground models included in PySM
+@item custom foregrounds models from the so_pysm_models package
+@item precomputed Cosmic Microwave Background simulations
+@item noise simulations based on expected performance and simulated hitmaps
+@item effect of gaussian beam convolution
+@end itemize")
+    (license license:bsd-2)))
+
 (define-public python-pixell
   (package
     (name "python-pixell")
-- 
2.47.1

Message #56 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 26/27] gnu: Add python-so-noise-models.
Date: Tue, 21 Jan 2025 23:22:14 +0000

* gnu/packages/astronomy.scm (python-so-noise-models): New variable.

Change-Id: Ic07bdd4cd0f115ec80594a24b58cb1b0629b7f0f
---
 gnu/packages/astronomy.scm | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0797c76a02f..2c549c43bb8 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3323,6 +3323,39 @@ (define-public python-sncosmo
 to make such analysis both as flexible and clear as possible.")
     (license license:bsd-3)))
 
+(define-public python-so-noise-models
+  (let ((commit "fac881eb5ee012673d8994443caa3c6ad7fac2b6")
+        (revision "0"))
+    (package
+      (name "python-so-noise-models")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch) ; no release on PyPI
+         (uri (git-reference
+               (url "https://github.com/simonsobs/so_noise_models")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "02ridxr3a8dx2nwsv386fxin4qs5f7h6q5sk28n9jprgnmgzzsfa"))))
+      (build-system pyproject-build-system)
+      (arguments
+       (list
+        #:tests? #f)) ; no tests
+      (native-inputs
+       (list python-setuptools
+             python-wheel))
+      (propagated-inputs
+       (list python-matplotlib
+             python-numpy))
+      (home-page "https://github.com/simonsobs/so_noise_models")
+      (synopsis "Simons Observatory N(ell) noise models")
+      (description
+       "This package provides N(ell) noise curve projection code for the
+Simons Observatory.  The intention is that the full history of noise models
+will be provided to supplement published projections and simulations.")
+      (license license:bsd-2))))
+
 (define-public python-soxs
   (package
     (name "python-soxs")
-- 
2.47.1

Message #59 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 05/27] gnu: python-asdf-compression: Update to 0.0.1-1.7cfd07c.
Date: Tue, 21 Jan 2025 23:21:53 +0000

* gnu/packages/astronomy.scm (python-asdf-compression): Update to
0.0.1-1.7cfd07c.

Change-Id: I93c820df700dfd9360f40d90b86a81a8a21327f8
---
 gnu/packages/astronomy.scm | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index eda8ca325b1..a80c6fee941 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5899,8 +5899,8 @@ (define-public python-synphot
 
 (define-public python-asdf-compression
   ;; TODO: No release, change to tag when it's ready.
-  (let ((commit "57cc7e76fb4163be3e99fb740b36b5ec5ae96e49")
-        (revision "0"))
+  (let ((commit "7cfd07c6f789d4919e5730e0cda150fb20da4139")
+        (revision "1"))
     (package
       (name "python-asdf-compression")
       (version (git-version "0.0.1" revision commit))
@@ -5912,7 +5912,7 @@ (define-public python-asdf-compression
                (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "1g6iiyls950k66dmd0pbqqdvz74kksc4j191n0ik6fhjnkiwifgs"))))
+          (base32 "198y3mnl9kvhva479k6g9zbynjg8apsrwy7lq26g5q6v55s16hgc"))))
       (build-system pyproject-build-system)
       (arguments
        (list
@@ -5932,7 +5932,7 @@ (define-public python-asdf-compression
              python-blosc
              python-lz4
              python-zstandard))
-      (home-page "https://github.com/asdf-format/asdf-fits-schemas")
+      (home-page "https://github.com/asdf-format/asdf-compression")
       (synopsis "ASDF extension to support various compression algorithms")
       (description
        "This package includes a plugin for the Python library ASDF to add
-- 
2.47.1

Message #62 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 09/27] gnu: python-cdflib: Update to 1.3.3.
Date: Tue, 21 Jan 2025 23:21:57 +0000

* gnu/packages/astronomy.scm (python-cdflib): Update to 1.3.3.
[native-inputs]: Remove python-astropy and python-hypothesis; add
python-astropy-minimal.

Change-Id: I71192f39ac63152bd919a9ba9acdd3475d744e1e
---
 gnu/packages/astronomy.scm | 14 ++++++--------
 1 file changed, 6 insertions(+), 8 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0cecabc4b8b..ff879490409 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2028,7 +2028,7 @@ (define-public python-ccdproc
 (define-public python-cdflib
   (package
     (name "python-cdflib")
-    (version "1.3.2")
+    (version "1.3.3")
     (source
      (origin
        (method git-fetch)               ; no tests in PyPI release
@@ -2037,28 +2037,26 @@ (define-public python-cdflib
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0g723s5xg7vd37vlbjpgpiljd3vxwccslwzcf619zvdnc2xbcw2c"))))
+        (base32 "1b7r3hfkb3ldi02a6pzdcm4vrnz2ywsxy7zgg5jn903i4686wnsb"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:phases
            #~(modify-phases %standard-phases
                (add-before 'build 'set-env-version
                  (lambda _
-                   (setenv "SETUPTOOLS_SCM_PRETEND_VERSION"
-                           #$version)))
+                   (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))
                (add-before 'check 'set-home-env
                  (lambda _
                    (setenv "HOME" (getcwd)))))))
     (native-inputs
-     (list python-astropy
-           python-hypothesis
+     (list python-astropy-minimal
            python-pytest
            python-pytest-cov
            python-pytest-remotedata
            python-setuptools
            python-setuptools-scm
-           python-xarray
-           python-wheel))
+           python-wheel
+           python-xarray))
     (propagated-inputs
      (list python-numpy))
     (home-page "https://github.com/MAVENSDC/cdflib")
-- 
2.47.1

Message #65 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 19/27] gnu: python-statmorph: Update to 0.6.1.
Date: Tue, 21 Jan 2025 23:22:07 +0000

* gnu/packages/astronomy.scm (python-statmorph): Update to 0.6.1.
[arguments] <tests>: Skip 3 failing tests, reported upstream.
<phases>: Add 'relax-requirements.
[native-inputs]: Add python-wheel.

Change-Id: I2a794c585cf9ed3c484fbdc761c7426425965dba
---
 gnu/packages/astronomy.scm | 23 ++++++++++++++++++++---
 1 file changed, 20 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 1ad0bd4dc8c..ea9cbcd79b7 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5062,17 +5062,34 @@ (define-public python-spisea
 (define-public python-statmorph
   (package
     (name "python-statmorph")
-    (version "0.6.0")
+    (version "0.6.1")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "statmorph" version))
        (sha256
-        (base32 "1575vmk4kl06yxyid7mb1r7llbrmraagvx2b0h5x335ha7irnkjk"))))
+        (base32 "0q9h8yqd8w8ckakn3hx7r5mag3vpgaah077rvi3bdmkmix5ky7r9"))))
     (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      ;; See <https://github.com/vrodgom/statmorph/issues/13>.
+      #~(list "-k" (string-join
+                    (list "not test_no_psf"
+                          "test_psf"
+                          "test_weightmap")
+                    " and not "))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "setup.py"
+                ;; scikit-image>=0.25.0
+                ((">=0.25.0") ">=0.23.2")))))))
     (native-inputs
      (list python-pytest
-           python-setuptools))
+           python-setuptools
+           python-wheel))
     (propagated-inputs
      (list python-astropy
            python-numpy
-- 
2.47.1

Message #68 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 12/27] gnu: python-ndcube: Update to 2.3.0.
Date: Tue, 21 Jan 2025 23:22:00 +0000

* gnu/packages/astronomy.scm (python-ndcube): Update to 2.3.0.
[arguments] <test-flags>: Run tests in parallel, it's supported by
upstream.
[native-inputs]: Add python-pytest-xdist.

Change-Id: I92cfb35e22434226711de80b923ca02f865afaf1
---
 gnu/packages/astronomy.scm | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5ad39ff879c..4e1b091bb21 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4157,18 +4157,19 @@ (define-public python-naima
 (define-public python-ndcube
   (package
     (name "python-ndcube")
-    (version "2.2.4")
+    (version "2.3.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "ndcube" version))
        (sha256
-        (base32 "08l4nq43igpic6v3zjnyjq3yy44czg79798rmv5la52hbzbz1kj3"))))
+        (base32 "1pza5g38gn941dwy8yahkd37lb7z80czs1yj38xhn2cf0s69779h"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:test-flags
-      #~(list "-k" (string-append
+      #~(list "--numprocesses" (number->string (parallel-job-count))
+              "-k" (string-append
                     ;; Break cycle: python-ndcube -> python-specutils ->
                     ;; python-ndcube, see
                     ;; <https://github.com/sunpy/ndcube/issues/733>.
@@ -4200,6 +4201,8 @@ (define-public python-ndcube
            python-pytest
            python-pytest-astropy
            python-pytest-mpl
+           ;; python-pytest-memray ; not packaged yet
+           python-pytest-xdist
            python-scipy
            python-setuptools
            python-setuptools-scm
-- 
2.47.1

Message #71 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 04/27] gnu: python-ads: Update to 0.12.7.
Date: Tue, 21 Jan 2025 23:21:52 +0000

* gnu/packages/astronomy.scm (python-ads): Update to 0.12.7.

Change-Id: I54bda0030109e2d3c36eb6620f8cf50e19e1a4f0
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 545a7434e69..eda8ca325b1 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -1511,13 +1511,13 @@ (define-public python-acstools
 (define-public python-ads
   (package
     (name "python-ads")
-    (version "0.12.6")
+    (version "0.12.7")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "ads" version))
        (sha256
-        (base32 "18aizbsmhwz99flz8n101mi0n0lk3m3qqzfvmxrmjwqvydfypjml"))))
+        (base32 "156y3zp0nm77976rwsxjjdh7yvggas8s6m0nm523khvn4lq8f9n0"))))
     (build-system pyproject-build-system)
     (native-inputs
      (list nss-certs-for-test
-- 
2.47.1

Message #74 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 07/27] gnu: python-astroquery: Update to 0.4.8.
Date: Tue, 21 Jan 2025 23:21:55 +0000

* gnu/packages/astronomy.scm (python-astroquery): Update to 0.4.8.

Change-Id: I460b98ebf5a3ccc025fa9138ff72e33224a09a14
---
 gnu/packages/astronomy.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9dc026ece3a..5970421ae30 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3633,13 +3633,13 @@ (define-public python-astroplan
 (define-public python-astroquery
   (package
     (name "python-astroquery")
-    (version "0.4.7")
+    (version "0.4.8")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "astroquery" version))
        (sha256
-        (base32 "1jbyfhqk74wsdjxzqi0hcrgc7ha4q8cyjx96nv6w9bjg1b5vlzq4"))))
+        (base32 "1dgc792xp6bpb63kqhwqpmc7ck9ifr6wlcqqgl091mfrjy40h4aw"))))
     (build-system pyproject-build-system)
     (arguments
      (list
-- 
2.47.1

Message #77 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 24/27] gnu: Add python-pixell.
Date: Tue, 21 Jan 2025 23:22:12 +0000

* gnu/packages/astronomy.scm (python-pixell): New variable.

Change-Id: If854e44edbfccf8dfb03b5354893196ef9b1b789
---
 gnu/packages/astronomy.scm | 43 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 43 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4057feac8f8..c4d7936e3dd 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -39,6 +39,7 @@ (define-module (gnu packages astronomy)
   #:use-module (gnu packages bash)
   #:use-module (gnu packages bison)
   #:use-module (gnu packages boost)
+  #:use-module (gnu packages build-tools)
   #:use-module (gnu packages certs)
   #:use-module (gnu packages check)
   #:use-module (gnu packages cmake)
@@ -2934,6 +2935,48 @@ (define-public python-holodeck
 observationally-derived galaxy merger catalogs.")
     (license license:expat)))
 
+(define-public python-pixell
+  (package
+    (name "python-pixell")
+    (version "0.28.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pixell" version))
+       (sha256
+        (base32 "11xd0ld329vr3spg5nzszn0bxzahnvkrh2akkd7qff33ndf75hkk"))))
+    (build-system pyproject-build-system)
+    (native-inputs
+     (list gfortran
+           meson-python
+           perl ; fortran/Makefile
+           pkg-config
+           python-cython
+           python-pytest))
+    (propagated-inputs
+     (list python-astropy
+           python-coveralls
+           python-cython ; check why it needs in installation
+           python-dateutil
+           python-ducc0
+           python-h5py
+           python-healpy
+           python-matplotlib
+           python-numba
+           python-numpy
+           python-pillow
+           python-pyyaml
+           python-scipy))
+    (home-page "https://pixell.readthedocs.io/")
+    (synopsis "Tectangular pixel map manipulation and harmonic analysis")
+    (description
+     "pixell is a library for loading, manipulating and analyzing maps stored
+in rectangular pixelization.  It is mainly intended for use with maps of the
+sky (e.g. CMB intensity and polarization maps, stacks of 21 cm intensity maps,
+binned galaxy positions or shear) in cylindrical projection, but its core
+functionality is more general.")
+    (license license:bsd-3)))
+
 (define-public python-pvextractor
   (package
     (name "python-pvextractor")
-- 
2.47.1

Message #80 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 15/27] gnu: python-rad: Update to 0.23.0.
Date: Tue, 21 Jan 2025 23:22:03 +0000

* gnu/packages/astronomy.scm (python-rad): Update to 0.23.0.
[propagated-inputs]: Remove python-asdf-3; add python-asdf.
[native-inputs]: Add python-pytest-doctestplus.

Change-Id: I0fa85403b34024d13c668b43aa56b5046955b6e2
---
 gnu/packages/astronomy.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4cc69af058e..dc0938fb550 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6179,13 +6179,13 @@ (define python-asdf-wcs-schemas
 (define-public python-rad
   (package
     (name "python-rad")
-    (version "0.22.0")
+    (version "0.23.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "rad" version))
        (sha256
-        (base32 "1p6v49gzbzishy1kdd5g8nbl97qp459s1smb6j94wvif4262zkm8"))))
+        (base32 "1c771lxj45iakj4ynjmfg332cm10yllmwniigs9zzjnb02kmaks5"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -6194,11 +6194,12 @@ (define-public python-rad
       #:test-flags #~(list "--ignore=tests/test_schemas.py")))
     (native-inputs
      (list python-pytest
+           python-pytest-doctestplus
            python-setuptools
            python-setuptools-scm
            python-wheel))
     (propagated-inputs
-     (list python-asdf-3
+     (list python-asdf
            python-asdf-astropy))
     (home-page "https://github.com/spacetelescope/rad")
     (synopsis "Roman Attribute Dictionary")
-- 
2.47.1

Message #83 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 22/27] gnu: Add ska-sdp-func.
Date: Tue, 21 Jan 2025 23:22:10 +0000

* gnu/packages/astronomy.scm ska-sdp-func, python-ska-sdp-func): New
variables.

Change-Id: I98bf7d29aaaa0a37fc0eaa4c421f26f8b0af3844
---
 gnu/packages/astronomy.scm | 61 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 61 insertions(+)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index f1ae519c25c..4057feac8f8 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -7032,6 +7032,67 @@ (define-public siril
 large number of image formats.")
     (license license:gpl3+)))
 
+(define-public ska-sdp-func
+  (package
+    (name "ska-sdp-func")
+    (version "1.2.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://gitlab.com/ska-telescope/sdp/ska-sdp-func")
+             (commit version)))
+       (sha256
+        (base32 "0blk4sfy2kl544d7iahcd9awvlg3xvwcm5qmis6h4xiw7xgj7psf"))
+       (file-name (git-file-name name version))))
+    (build-system cmake-build-system)
+    (arguments
+     (list
+      #:configure-flags
+      #~(list "-DBUILD_INFO=ON"
+              "-DFIND_CUDA=OFF")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'disable-failing-tests
+            (lambda _
+              ;; Two tests fail with SegFAilt: "Cannot allocate GPU memory:
+              ;; The processing function library was compiled without CUDA
+              ;; support".
+              (substitute* "tests/CMakeLists.txt"
+                (("clean") "# clean")))))))
+    (home-page "https://developer.skao.int/projects/ska-sdp-func/en/latest/")
+    (synopsis "SDP Processing Function Library")
+    (description
+     "This package provides a Square Kilometre Array (SKA) Science Data
+Processor (SDP) function libary for radio astronomy.")
+    (license license:bsd-3)))
+
+(define-public python-ska-sdp-func
+  (package/inherit ska-sdp-func
+    (name "python-ska-sdp-func")
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list
+         ;; Ignore tests requiring CUDA.
+         "--ignore=tests/visibility/test_tiled_functions.py"
+         "--ignore=tests/visibility/test_opt_weighting.py"
+         ;; We don't want benchmark tests.
+         "--ignore=tests/fourier_transforms/test_swiftly_bench.py"
+         ;; Skip tests failing with errors:
+         ;; UnboundLocalError: local variable 'psf' referenced before assignment
+         ;; AttributeError: 'NoneType' object has no attribute 'asnumpy'
+         "-k" "not test_hogbom_clean and not test_ms_clean_cornwell")))
+    (native-inputs
+     (list cmake
+           python-pytest
+           python-scipy
+           python-setuptools
+           python-wheel))
+    (propagated-inputs
+     (list python-numpy))))
+
 (define-public skymaker
   (package
     (name "skymaker")
-- 
2.47.1

Message #86 received at 75742 <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742 <at> debbugs.gnu.org
Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Subject: [PATCH 18/27] gnu: python-spectral-cube: Update to 0.6.6.
Date: Tue, 21 Jan 2025 23:22:06 +0000

* gnu/packages/astronomy.scm (python-spectral-cube): Update to 0.6.6.
[source] <uri>: Adjust it as the name of PyPI archive has been changed.
[propagated-inputs]: Remove python-six; add python-aplpy,
python-packaging, python-pvextractor-bootstrap, and python-tqdm.
[native-inputs]: Remove python-pytest-astropy and python-pytest-xdist.

Change-Id: Idf63ee22a289cedd6f6ba7122a62ff93cf64571f
---
 gnu/packages/astronomy.scm | 27 +++++++++------------------
 1 file changed, 9 insertions(+), 18 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index aa9c9d2b111..1ad0bd4dc8c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4827,13 +4827,13 @@ (define-public python-sunpy-soar
 (define-public python-spectral-cube
   (package
     (name "python-spectral-cube")
-    (version "0.6.5")
+    (version "0.6.6")
     (source
      (origin
        (method url-fetch)
-       (uri (pypi-uri "spectral-cube" version))
+       (uri (pypi-uri "spectral_cube" version))
        (sha256
-        (base32 "0cqxgmk46gv2qa2kls8fph105lgwbwf13hvizh6w85mzgypyp740"))))
+        (base32 "0hz2pxc7fnxd1xr1n74ljjc84j25plnclp3y6jwg1banps360c3f"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -4842,33 +4842,24 @@ (define-public python-spectral-cube
       #:test-flags
       #~(list "--numprocesses" (number->string (parallel-job-count)))))
     (propagated-inputs
-     (list python-astropy
-           ;; XXX: Currently failing in upstream as it's optional silent
-           ;; until a new version is released, see:
-           ;; <https://github.com/aplpy/aplpy/issues/492>.
-           ;;
-           ;; python-aplpy
+     (list python-aplpy
+           python-astropy
            python-casa-formats-io
            python-dask
            python-distributed
            python-fsspec
-           ;; python-glue-core ; Not packed http://glueviz.org/, optional.
            python-joblib
            python-matplotlib
            python-numpy
+           python-packaging
+           python-pvextractor-bootstrap
            python-radio-beam
            python-reproject
            python-scipy
-           python-six
-           ;; python-yt ; Not packed https://yt-project.org/, optional.
+           python-tqdm
            python-zarr))
     (native-inputs
-     (list ;; XXX: Introduce cycle with pvextractor, listed as extra requiremnts
-           ;; in [noviz] option.
-           ;; python-pvextractor
-           python-pytest-astropy
-           python-pytest-xdist
-           python-regions
+     (list python-regions
            python-setuptools-scm
            python-wheel))
     (home-page "https://spectral-cube.readthedocs.io/en/latest/")
-- 
2.47.1

Message #91 received at 75742-done <at> debbugs.gnu.org (full text, mbox):

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 75742-done <at> debbugs.gnu.org
Subject: [PATCH 00/27] Astro update 2025/01
Date: Wed, 29 Jan 2025 23:05:34 +0000

[Message part 1 (text/plain, inline)]

Pushed to master as:

9d99efa2256 * master gnu: Add python-mapsims.
82ea580d831 * gnu: Add python-so-noise-models.
041994a0654 * gnu: Add python-pysm3.
eaf76118bbf * gnu: Add python-pixell.
7a3bb5b1c6d * gnu: Add python-ducc0.
3d8e67f12c5 * gnu: Add ska-sdp-func.
5d401e5fd7e * gnu: python-viresclient: Update to 0.12.1.
a4a6cb417dc * gnu: python-sunpy-soar: Update to 1.11.0.
62b40076383 * gnu: python-statmorph: Update to 0.6.1.
666df6dabc3 * gnu: python-spectral-cube: Update to 0.6.6.
50f1837c594 * gnu: Add python-pvextractor-bootstrap.
5a06e109fe4 * gnu: python-roman-datamodels: Update to 0.23.0.
3d4d49eef68 * gnu: python-rad: Update to 0.23.0.
8fb8a63e683 * gnu: python-poppy: Update to 1.1.2.
3627d497c31 * gnu: python-numexpr: Update to 2.9.0.
4ace0faf470 * gnu: python-ndcube: Update to 2.3.0.
9f0ca1578ef * gnu: python-crds: Update to 12.0.9.
be0060b5bd5 * gnu: python-czml3: Update to 2.3.0.
85eb135cb34 * gnu: python-cdflib: Update to 1.3.3.
1e836312466 * gnu: python-ccdproc: Update to 2.4.3.
f8e37a74f25 * gnu: python-astroquery: Update to 0.4.8.
425eb973c20 * gnu: python-astropy-iers-data: Update to 0.2025.1.20.0.32.27.
7a1267266ab * gnu: python-asdf-compression: Update to 0.0.1-1.7cfd07c.
bd49bb46c36 * gnu: python-ads: Update to 0.12.7.
c228d5df3ce * gnu: stellarium: Update to 24.4-0.60b6bec.
509e2f43bb2 * gnu: sextractor: Update to 2.28.2.
3ef0fb0d768 * gnu: calceph: Update to 4.0.4.

--
Oleg

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