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* gnu/packages/python-build.scm (python-setuptools-57): Delete variable.
---
gnu/packages/python-build.scm | 12 ------------
1 file changed, 12 deletions(-)
diff --git a/gnu/packages/python-build.scm b/gnu/packages/python-build.scm
index 6bea44fee6..85115afe25 100644
--- a/gnu/packages/python-build.scm
+++ b/gnu/packages/python-build.scm
@@ -344,18 +344,6 @@ (define-public python-setuptools
license:asl2.0 ;packaging is dual ASL2/BSD-2
license:bsd-2))))
-;; This is the last version with use_2to3 support.
-(define-public python-setuptools-57
- (package
- (inherit python-setuptools)
- (version "57.5.0")
- (source (origin
- (inherit (package-source python-setuptools))
- (uri (pypi-uri "setuptools" version))
- (sha256
- (base32
- "091sp8lrin7qllrhhx7y0iiv5gdb1d3l8a1ip5knk77ma1njdlyr"))))))
-
(define-public python-wheel
(package
(name "python-wheel")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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Subject: [PATCH v2 23/24] gnu: python-louvain: Use pyproject-build-system.
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* gnu/packages/graph.scm (python-louvain)
[build-system]: Switch from python-build-system to
pyproject-build-system.
[native-inputs]: Replace python-setuptools-57 by
python-setuptools. Add python-wheel.
---
gnu/packages/graph.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index f29a71c0d7..22fbf07229 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -388,9 +388,9 @@ (define-public python-louvain
(patches (search-patches "python-louvain-fix-test.patch"))
(sha256
(base32 "0sx53l555rwq0z7if8agirjgw4ddp8r9b949wwz8vlig03sjvfmp"))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(native-inputs
- (list python-setuptools-57)) ;for use_2to3 support
+ (list python-setuptools python-wheel))
(propagated-inputs
(list python-networkx python-numpy))
(home-page "https://github.com/taynaud/python-louvain")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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To: 76835 <at> debbugs.gnu.org
Subject: [PATCH v2 22/24] gnu: python-importlib-resources: Update
python-setuptools input.
Date: Sun, 9 Mar 2025 23:11:30 +0100
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* gnu/packages/python-xyz.scm (python-importlib-resource)
[native-inputs]: Replace python-setuptools-57 by python-setuptools.
---
gnu/packages/python-xyz.scm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 72906d7b37..ace13dd419 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -12913,7 +12913,7 @@ (define-public python-importlib-resources
python-pytest-enabler
python-pytest-flake8
python-pytest-mypy
- python-setuptools-57
+ python-setuptools
python-setuptools-scm))
(propagated-inputs
(list python-zipp))
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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Subject: [PATCH v2 20/24] gnu: python-docutils-0.15: Update to 0.16.
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* gnu/packages/python-xyz.scm (python-docutils-0.15): Update to 0.16.
[native-inputs]: Replace python-setuptools-57 by python-setuptools.
* gnu/packages/python-web.scm (awscli)[inputs]: Update accordingly.
* gnu/packages/sphinx.scm (python-sphinx-panels)[propagated-inputs]:
Update accordingly.
---
gnu/packages/python-web.scm | 2 +-
gnu/packages/python-xyz.scm | 10 +++++-----
gnu/packages/sphinx.scm | 2 +-
3 files changed, 7 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 77a4e5c8f1..42f98df644 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -5165,7 +5165,7 @@ (define-public awscli
(list groff-minimal
python-botocore
python-colorama
- python-docutils-0.15
+ python-docutils-0.16
python-pyyaml
python-rsa
python-s3transfer))
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 558131fee6..72906d7b37 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -7835,21 +7835,21 @@ (define-public python-docutils
;; licensed under the PFSL, BSD 2-clause, and GPLv3+ licenses.
(license (list license:public-domain license:psfl license:bsd-2 license:gpl3+))))
-;; awscli refuses to be built with docutils < 0.16.
-(define-public python-docutils-0.15
+;; awscli refuses to be built with docutils < 0.17.
+(define-public python-docutils-0.16
(package
(inherit python-docutils)
- (version "0.15")
+ (version "0.16")
(source (origin
(method url-fetch)
(uri (pypi-uri "docutils" version))
(sha256
(base32
- "0ja8q6mdj6xv62jjw3phv8j5nfqi5x8hnfy4pqfcjcgz4b34k8sl"))))
+ "1z3qliszqca9m719q3qhdkh0ghh90g500avzdgi7pl77x5h3mpn2"))))
;; tests contain Python 2 syntax.
(arguments '(#:tests? #false))
(native-inputs
- (list python-setuptools-57))))
+ (list python-setuptools))))
(define-public python-docx
(package
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 58952049a1..239a2cc780 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -597,7 +597,7 @@ (define-public python-sphinx-panels
(substitute* "setup.py"
(("sphinx>=2,<5")
"sphinx>=2,<6")))))))
- (propagated-inputs (list python-docutils-0.15 python-sphinx-5))
+ (propagated-inputs (list python-docutils-0.16 python-sphinx-5))
(native-inputs
(list python-pytest
python-pytest-regressions
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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* gnu/packages/sphinx.scm (sphinx-5)[arguments]{test-flags}: Ignore
test test_autodoc_default_options (also ignored in sphinx@6).
---
gnu/packages/sphinx.scm | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 239a2cc780..4b3e598e38 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -197,7 +197,10 @@ (define-public python-sphinx-5
" and not test_viewcode"
;; These fail with pygments 2.10+. They are harmless.
" and not test_additional_targets_should_not_be_translated"
- " and not test_additional_targets_should_be_translated"))
+ " and not test_additional_targets_should_be_translated"
+ ;; As in Sphinx@6:
+ ;; AssertionError: assert...list of weak references to the object...
+ " and not test_autodoc_default_options"))
#:phases
'(modify-phases %standard-phases
(add-before 'check 'pre-check
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76835 <at> debbugs.gnu.org
Subject: [PATCH v2 19/24] gnu: gdal: Update to 3.10.2.
Date: Sun, 9 Mar 2025 23:11:27 +0100
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* gnu/packages/geo.scm (gdal): Update to 3.10.2.
[source]: Bundle zlib back, as it's now using a custom fork.
[arguments]: Add 'patch-runpath phase and {modules} in order to patch
the runpaths of the swig generated python bindings. Improve style.
[inputs]: Add gcc:lib, hdf5, librasterlite2, libspatialite.
[native-inputs]: Add bison.
---
gnu/packages/geo.scm | 66 ++++++++++++++++++++++++++++++--------------
1 file changed, 45 insertions(+), 21 deletions(-)
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index 251ef5ced9..7e9b1da2e3 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -1408,46 +1408,69 @@ (define-public pdal
(define-public gdal
(package
(name "gdal")
- (version "3.6.1")
+ (version "3.10.2")
(source (origin
(method url-fetch)
(uri (string-append
- "http://download.osgeo.org/gdal/" version "/gdal-"
- version ".tar.gz"))
+ "http://download.osgeo.org/gdal/" version "/gdal-"
+ version ".tar.gz"))
(sha256
(base32
- "1qckwnygszxkkq40bf87s3m1sab6jj9jyakdvskh0qf7dq8zjarf"))
+ "1nmh92vbcrp9qnld98vkxsvaw0mrska06kxxbn7n6kgbh6mhlwfa"))
(modules '((guix build utils)))
(snippet
- `(begin
- ;; TODO: frmts contains a lot more bundled code.
- (for-each delete-file-recursively
- ;; bundled code
- '("frmts/png/libpng"
- "frmts/gif/giflib"
- "frmts/jpeg/libjpeg"
- "frmts/jpeg/libjpeg12"
- "frmts/gtiff/libtiff"
- "frmts/gtiff/libgeotiff"
- "frmts/zlib"
- "ogr/ogrsf_frmts/geojson/libjson"))))))
+ `(begin
+ ;; TODO: frmts contains a lot more bundled code.
+ (for-each delete-file-recursively
+ ;; bundled code
+ '("frmts/png/libpng"
+ "frmts/gif/giflib"
+ "frmts/jpeg/libjpeg"
+ "frmts/jpeg/libjpeg12"
+ "frmts/gtiff/libtiff"
+ "frmts/gtiff/libgeotiff"
+ "ogr/ogrsf_frmts/geojson/libjson"))))))
(build-system cmake-build-system)
(arguments
- `(#:tests? #f
- #:configure-flags
- (list "-DGDAL_USE_INTERNAL_LIBS=WHEN_NO_EXTERNAL"
- "-DGDAL_USE_JPEG12_INTERNAL=OFF")))
+ (list
+ #:tests? #f
+ #:configure-flags '(list "-DGDAL_USE_INTERNAL_LIBS=WHEN_NO_EXTERNAL"
+ "-DGDAL_USE_JPEG12_INTERNAL=OFF")
+ #:modules '((guix build cmake-build-system)
+ (guix build gremlin)
+ (guix build utils)
+ (srfi srfi-26))
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'strip 'patch-runpath
+ (lambda* (#:key inputs #:allow-other-keys)
+ (for-each
+ (cut set-file-runpath <>
+ (list (string-append #$output "/lib")
+ (dirname (search-input-file
+ inputs "/lib/libgcc_s.so"))
+ (dirname (search-input-file
+ inputs "/lib/libc.so.6"))))
+ (find-files
+ #$output
+ (lambda (file stat)
+ (and (string-suffix? ".so" file)
+ (string-contains file "site-packages"))))))))))
(inputs
(list curl
expat
freexl
+ `(,gcc "lib")
geos
giflib
+ hdf5
json-c
libgeotiff
libjpeg-turbo
libjxl
libpng
+ librasterlite2
+ libspatialite
libtiff
libwebp
lz4
@@ -1463,7 +1486,8 @@ (define-public gdal
zlib
zstd))
(native-inputs
- (list pkg-config
+ (list bison
+ pkg-config
python))
(propagated-inputs
(list python-numpy))
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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Subject: [PATCH v2 18/24] gnu: python-pyvcf: Rename package to python-pyvcf3.
Date: Sun, 9 Mar 2025 23:11:26 +0100
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* gnu/packages/bioinformatics.scm (python-pyvcf): Define in terms of
'deprecated-package'.
(python-pyvcf3): New variable, formerly known as "python-pyvcf".
---
gnu/packages/bioinformatics.scm | 65 +++++++++++----------------------
1 file changed, 21 insertions(+), 44 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6f4c5053b6..c593c37d35 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -23715,50 +23715,27 @@ (define-public tombo
;; Some parts may be BSD-3-licensed.
(license license:mpl2.0)))
-(define-public python-pyvcf
- (let ((commit "476169cd457ba0caa6b998b301a4d91e975251d9")
- (revision "0"))
- (package
- (name "python-pyvcf")
- (version (git-version "0.6.8" revision commit))
- ;; Use git, because the PyPI tarballs lack test data.
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/jamescasbon/PyVCF.git")
- ;; Latest release is not tagged.
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0qf9lwj7r2hjjp4bd4vc7nayrhblfm4qcqs4dbd43a6p4bj2jv5p"))))
- (build-system python-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'patch-sample-script
- (lambda _
- ;; Add Python 3 compatibility to this sample script.
- (substitute* "scripts/vcf_sample_filter.py"
- (("print (.*)\n" _ arg)
- (string-append "print(" arg ")\n")))))
- (add-after 'install 'remove-installed-tests
- ;; Do not install test files.
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (delete-file-recursively (string-append
- (site-packages inputs outputs)
- "/vcf/test")))))))
- (native-inputs
- ;; Older setuptools is needed for use_2to3.
- (list python-cython python-setuptools-57))
- (propagated-inputs
- (list python-pysam python-rpy2))
- (home-page "https://github.com/jamescasbon/PyVCF")
- (synopsis "Variant Call Format parser for Python")
- (description "This package provides a @acronym{VCF,Variant Call Format}
+;; This is a fork of the original unmaintained python-pyvcf.
+(define-public python-pyvcf3
+ (package
+ (name "python-pyvcf3")
+ (version "1.0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "PyVCF3" version))
+ (sha256
+ (base32 "0783pb2p5qx3vgwksc9b9vxbpdq7ax6znff9wa3h80cpicfdf5jb"))))
+ (build-system pyproject-build-system)
+ (propagated-inputs (list python-setuptools))
+ (native-inputs (list python-setuptools python-wheel))
+ (home-page "https://github.com/dridk/PyVCF3")
+ (synopsis "Variant Call Format parser for Python")
+ (description "This package provides a @acronym{VCF,Variant Call Format}
parser for Python.")
- (license license:expat))))
+ (license license:expat)))
+
+(define-deprecated/public-alias python-pyvcf python-pyvcf3)
(define-public nanosv
(package
@@ -23772,7 +23749,7 @@ (define-public nanosv
"1wl2daj0bwrl8fx5xi8j8hfs3mp3vg3qycy66538n032v1qkc6xg"))))
(build-system python-build-system)
(inputs
- (list python-configparser python-pysam python-pyvcf))
+ (list python-configparser python-pysam python-pyvcf3))
(home-page "https://github.com/mroosmalen/nanosv")
(synopsis "Structural variation detection tool for Oxford Nanopore data")
(description "NanoSV is a software package that can be used to identify
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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To: 76835 <at> debbugs.gnu.org
Subject: [PATCH v2 17/24] gnu: Remove python-parameterizedtestcase.
Date: Sun, 9 Mar 2025 23:11:25 +0100
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This package is a leaf package in Guix, has been abandonned for 11
years (aside from a License change).
* gnu/packages/python-check.scm (python-parameterizedtestcase): Delete variable.
---
gnu/packages/python-check.scm | 19 -------------------
1 file changed, 19 deletions(-)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 1138e287f1..d8fa37b9f6 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -2925,25 +2925,6 @@ (define-public python-pandas-vet
in an opinionated way.")
(license license:expat)))
-(define-public python-parameterizedtestcase
- (package
- (name "python-parameterizedtestcase")
- (version "0.1.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "parameterizedtestcase" version))
- (sha256
- (base32 "0zhjmsd16xacg4vd7zb75kw8q9khn52wvad634v1bvz7swaivk2c"))))
- (build-system python-build-system)
- (native-inputs (list python-setuptools-57)) ;for use_2to3
- (home-page
- "https://github.com/msabramo/python_unittest_parameterized_test_case")
- (synopsis "Parameterized tests for Python's unittest module")
- (description "This package provides parameterized tests for Python's
-@code{unittest} module taking inspiration from pytest.")
- (license license:expat)))
-
(define-public python-pytest-rerunfailures
(package
(name "python-pytest-rerunfailures")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76835 <at> debbugs.gnu.org
Subject: [PATCH v2 16/24] gnu: Remove python-anyjson.
Date: Sun, 9 Mar 2025 23:11:24 +0100
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This package is a leaf package in Guix, is stale for 13 years, and its
upstream repository is not even up anymore.
* gnu/packages/python-xyz.scm (python-anyjson): Delete variable.
---
gnu/packages/python-xyz.scm | 28 ----------------------------
1 file changed, 28 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 6054a88562..558131fee6 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -21048,34 +21048,6 @@ (define-public python-pyquery
fast xml and html manipulation.")
(license license:bsd-3)))
-(define-public python-anyjson
- (package
- (name "python-anyjson")
- (version "0.3.3")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "anyjson" version))
- (sha256
- (base32
- "1fjph4alvcscsl5d4b6qpv1yh31jy05jxi1l0xff7lws7j32v09p"))))
- (build-system python-build-system)
- (arguments
- `(;; We could possibly get tests working, but on Python 3 it's not so easy.
- ;; Very strangely, 2to3 is run *during setup.py install* (or bdist, or
- ;; whatever) so this transformation needs to be done before the tests
- ;; can be run. Maybe we could add a build step to transform beforehand
- ;; but it could be annoying/difficult.
- #:tests? #f))
- (native-inputs (list python-setuptools-57)) ;for use_2to3 support
- (home-page "https://bitbucket.org/runeh/anyjson/")
- (synopsis
- "Wraps best available JSON implementation in a common interface")
- (description
- "Anyjson loads whichever is the fastest JSON module installed
-and provides a uniform API regardless of which JSON implementation is used.")
- (license license:bsd-3)))
-
(define-public python-amqp
(package
(name "python-amqp")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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* gnu/packages/sphinx.scm (python-sphinx-4): Delete variable.
---
gnu/packages/sphinx.scm | 19 -------------------
1 file changed, 19 deletions(-)
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 024bfe986a..58952049a1 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -267,25 +267,6 @@ (define-public python-sphinx-5
(texlive-updmap.cfg
(list texlive-cm-super texlive-tex-gyre))))))
-;; Some packages do not support Sphinx 5 yet. Remove when unused.
-(define-public python-sphinx-4
- (package
- (inherit python-sphinx-5)
- (version "4.5.0")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "Sphinx" version))
- (sha256
- (base32
- "1rp28jryxwy24y8vpacclqihbizyi6b1s6id86pibvm46ybcmy3v"))))
- (propagated-inputs
- (modify-inputs (package-propagated-inputs python-sphinx)
- (replace "python-docutils" python-docutils-0.15)))
- (native-inputs
- (modify-inputs (package-native-inputs python-sphinx)
- (delete python-flit-core)
- (append python-setuptools python-wheel)))))
-
(define-public python-sphinxcontrib-apidoc
(package
(name "python-sphinxcontrib-apidoc")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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Subject: [PATCH v2 14/24] gnu: python-numpy-documentation: Update
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* gnu/packages/python-xyz.scm (python-numpy-documentation):
[arguments]{phases}: Add phase 'avoid-external-deps. Adapt phase
'install by removing sphinx.ext.autodoc extension.
[native-inputs]: Replace python-sphinx-4 by python-sphinx. Add
python-sphinx-design.
---
gnu/packages/python-xyz.scm | 14 +++++++++++++-
1 file changed, 13 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index bacfac6c42..6054a88562 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -9684,6 +9684,16 @@ (define-public python-numpy-documentation
#:tests? #f ;we're only generating the documentation
#:phases
#~(modify-phases %standard-phases
+ (add-after 'unpack 'avoid-external-deps
+ (lambda _
+ ;; XXX: Avoid theme-switcher to avoid sphinx error
+ ;; TemplateNotFound('theme-switcher.html')
+ ;; XXX: Avoid version-switcher because it depends on the value
+ ;; of external https://numpy.org/doc/_static/versions.json
+ (substitute* "doc/source/conf.py"
+ (("\
+\"navbar_end\": \\[\"theme-switcher\", \"version-switcher\", ")
+ "\"navbar_end\": ["))))
(add-before 'build 'add-gnu-freefont-to-texmf
(lambda _
;; XXX: The Sphinx-generated tex output specifies the GNU
@@ -9729,6 +9739,7 @@ (define-public python-numpy-documentation
(("\"contents\"") "'index'")
;; Disable Sphinx extensions that produce broken Texinfo.
((".*'numpydoc'.*") "")
+ ((".*'sphinx.ext.autodoc'.*") "")
((".*'sphinx.ext.autosummary'.*") ""))
(invoke "make" "info" sphinxopts)
;; Install the HTML documentation.
@@ -9752,7 +9763,8 @@ (define-public python-numpy-documentation
python-pandas
python-pydata-sphinx-theme
python-scipy ;used by matplotlib
- python-sphinx-4
+ python-sphinx
+ python-sphinx-design
python-sphinx-panels
texinfo
(texlive-updmap.cfg
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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Subject: [PATCH v2 13/24] gnu: python-sphinx-panels: Update input to
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* gnu/packages/sphinx.scm (python-sphinx-panels):
[arguments]{phases}: Add 'loosen-requirements phase.
[propagated-inputs]: Replace python-sphinx-4 by python-sphinx-5.
---
gnu/packages/sphinx.scm | 10 +++++++++-
1 file changed, 9 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 5f06cb04f5..024bfe986a 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -608,7 +608,15 @@ (define-public python-sphinx-panels
(sha256
(base32 "1ivqz6yv96a2jp59kylg1gbkrmzq6zwilppz3ij0zrkjn25zb97k"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-docutils-0.15 python-sphinx-4))
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'loosen-requirements
+ (lambda _
+ (substitute* "setup.py"
+ (("sphinx>=2,<5")
+ "sphinx>=2,<6")))))))
+ (propagated-inputs (list python-docutils-0.15 python-sphinx-5))
(native-inputs
(list python-pytest
python-pytest-regressions
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints-5): Delete variable.
---
gnu/packages/sphinx.scm | 7 -------
1 file changed, 7 deletions(-)
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 6847592a99..5f06cb04f5 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -1234,13 +1234,6 @@ (define-public python-sphinx-autodoc-typehints
documenting acceptable argument types and return value types of functions.")
(license license:expat)))
-(define-public python-sphinx-autodoc-typehints-5
- (package/inherit python-sphinx-autodoc-typehints
- (propagated-inputs
- (modify-inputs
- (package-propagated-inputs python-sphinx-autodoc-typehints)
- (replace "python-sphinx" python-sphinx-5)))))
-
(define-public python-sphinx-pytest
(package
(name "python-sphinx-pytest")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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Subject: [PATCH v2 11/24] gnu: python-uqbar: Update to 7.0.0.
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* gnu/packages/graphviz.scm (python-uqbar): Update to 7.0.0.
[propagated-inputs]: Replace python-sphinx-5 by python-sphinx,
recursively.
---
gnu/packages/graphviz.scm | 11 +++--------
1 file changed, 3 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index defd53df73..c23369acc4 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -208,7 +208,7 @@ (define-public python-pygraphviz
(define-public python-uqbar
(package
(name "python-uqbar")
- (version "0.6.9")
+ (version "7.0.0")
(source
(origin
(method git-fetch)
@@ -217,7 +217,7 @@ (define-public python-uqbar
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "037qj3rymm6xzdpklddfhmfp2p1bq9fi3jrvxj6gmharphd5z869"))))
+ (base32 "0qa32d2z7bg3h26r18dv55g9lghw59wln7rkcciavyyjh553q430"))))
(build-system pyproject-build-system)
(arguments ; XXX: Disable failing tests.
(list #:test-flags '(list "tests" "-k" "not test_find_executable \
@@ -232,12 +232,7 @@ (define-public python-uqbar
python-setuptools
python-wheel))
(propagated-inputs
- (list python-black python-sphinx-5 python-unidecode
- (package/inherit python-sphinx-rtd-theme
- (propagated-inputs
- (modify-inputs
- (package-propagated-inputs python-sphinx-rtd-theme)
- (replace "python-sphinx" python-sphinx-5))))))
+ (list python-black python-sphinx python-unidecode python-sphinx-rtd-theme))
(home-page "https://github.com/josiah-wolf-oberholtzer/uqbar")
(synopsis "Tools for building documentation with Sphinx, Graphviz and LaTeX")
(description
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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* gnu/packages/python-check.scm (python-nptyping)[arguments]
{test-flags}: Ignore failing test.
---
gnu/packages/python-check.scm | 2 ++
1 file changed, 2 insertions(+)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index c969499521..1138e287f1 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -2601,6 +2601,8 @@ (define-public python-nptyping
(list
#:test-flags
#~(list
+ ;; This one started failing with the last update of Numpy.
+ "--ignore=tests/test_beartype.py"
;; Multiple failures due to undefined names (typing package must be
;; too outdated, or perhaps they use a newer pandas).
"--ignore=tests/test_mypy.py"
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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* gnu/packages/django.scm (python-django-3.2): Delete variable.
---
gnu/packages/django.scm | 20 ++------------------
1 file changed, 2 insertions(+), 18 deletions(-)
diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index cb9df0d2df..20522231ac 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -148,26 +148,10 @@ (define-public python-django-4.2
;; This CVE seems fixed since 4.2.1.
(lint-hidden-cve . ("CVE-2023-31047"))))))
-(define-public python-django-3.2
- (package
- (inherit python-django-4.2)
- (version "3.2.21")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "Django" version))
- (sha256
- (base32
- "0g3zm2glh76g31q06g6fwkwvkrphjj3mnap5sgk1hx3v9r44rpm5"))))
- (native-search-paths '()) ;no need for TZDIR
- (propagated-inputs
- (modify-inputs (package-propagated-inputs python-django-4.2)
- ;; Django 4.0 deprecated pytz in favor of Pythons built-in zoneinfo.
- (append python-pytz)))))
-
;; archivebox requires django>=3.1.3,<3.2
(define-public python-django-3.1.14
(package
- (inherit python-django-3.2)
+ (inherit python-django-4.2)
(version "3.1.14")
(source (origin
(method url-fetch)
@@ -176,7 +160,7 @@ (define-public python-django-3.1.14
(base32
"0ix3v2wlnplv78zxjrlw8z3hiap2d5mxvk0ny2fc65526shsb93j"))))
(propagated-inputs
- (modify-inputs (package-propagated-inputs python-django-3.2)
+ (modify-inputs (package-propagated-inputs python-django-4.2)
;; Django 4.0 deprecated pytz in favor of Pythons built-in zoneinfo.
(append python-pytz)))))
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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* gnu/packages/patchutils.scm (patchwork): Update to 3.2.1.
---
gnu/packages/patchutils.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/patchutils.scm b/gnu/packages/patchutils.scm
index 3cd3507b07..b2b84046b4 100644
--- a/gnu/packages/patchutils.scm
+++ b/gnu/packages/patchutils.scm
@@ -370,7 +370,7 @@ (define-public meld
(define-public patchwork
(package
(name "patchwork")
- (version "3.1.1")
+ (version "3.2.1")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -379,7 +379,7 @@ (define-public patchwork
(file-name (git-file-name name version))
(sha256
(base32
- "0is9d4gf93jcbyshyj2k3kjyrjnvimrm6bai6dbcx630md222j5w"))))
+ "04ikawdyhjwspxvhazbp5f5vym672y0jcw8rd2m75h9ipcpnyxim"))))
(build-system python-build-system)
(arguments
`(;; TODO: Tests require a running database
@@ -503,7 +503,7 @@ (define pythonpath
(inputs
(list python-wrapper))
(propagated-inputs
- (list python-django-3.2
+ (list python-django
;; TODO: Make this configurable
python-psycopg2
python-mysqlclient
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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Subject: [PATCH v2 08/24] gnu: python-cfn-lint: Update to 1.28.0.
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* gnu/packages/python-web.scm (python-cfn-lint): Update to 1.28.0.
---
gnu/packages/python-web.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 2438fba134..77a4e5c8f1 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1659,7 +1659,7 @@ (define-public python-cbor2
(define-public python-cfn-lint
(package
(name "python-cfn-lint")
- (version "1.22.1")
+ (version "1.28.0")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -1668,7 +1668,7 @@ (define-public python-cfn-lint
(file-name (git-file-name name version))
(sha256
(base32
- "1zz121r9yv1irwdbk07s7958fh43h3r3q39qcj0gv4kpgb0vdf32"))))
+ "0n1v05516s0zy64v1a7f7pj5h9lscvbkkwnlgmys7g8lydlgf0v4"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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To: 76835 <at> debbugs.gnu.org
Subject: [PATCH v2 06/24] gnu: graphite-web: Update to 1.1.10-2.49c28e2.
Date: Sun, 9 Mar 2025 23:11:14 +0100
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* gnu/packages/monitoring.scm (graphite-web): Update to 1.1.10-2.49c28e2.
---
gnu/packages/monitoring.scm | 99 +++++++++++++++++++++++--------------
1 file changed, 62 insertions(+), 37 deletions(-)
diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm
index b75500fc08..1009c32783 100644
--- a/gnu/packages/monitoring.scm
+++ b/gnu/packages/monitoring.scm
@@ -69,6 +69,7 @@ (define-module (gnu packages monitoring)
#:use-module (gnu packages prometheus)
#:use-module (gnu packages python)
#:use-module (gnu packages python-build)
+ #:use-module (gnu packages python-science)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages rrdtool)
@@ -461,45 +462,69 @@ (define-public python-carbon
(license license:asl2.0)))
(define-public graphite-web
- (package
- (name "graphite-web")
- (version "1.1.10")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "graphite-web" version))
- (sha256
- (base32
- "0nnk3kwn0b6bq9xnmv9bac6hpcbdgpgwf283c1ck5nm80panh61z"))))
- (build-system python-build-system)
- (arguments
- `(#:tests? #f ;XXX: not in PyPI release & requires database
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'relax-requirements
- (lambda _
- (substitute* "setup.py"
- ;; Allow newer versions of django-tagging.
- (("django-tagging==") "django-tagging>=")
- ;; And Django.
- (("Django>=1\\.8,<3\\.1") "Django>=1.8,<4"))))
- ;; Don't install to /opt
- (add-after 'unpack 'do-not-install-to-/opt
- (lambda _ (setenv "GRAPHITE_NO_PREFIX" "1") #t)))))
- (propagated-inputs
- (list python-cairocffi
- python-django-3.2
- python-django-tagging
- python-pyparsing
- python-pytz
- python-six
- python-urllib3))
- (home-page "https://graphiteapp.org/")
- (synopsis "Scalable realtime graphing system")
- (description "Graphite is a scalable real-time graphing system that does
+ (let ((commit "49c28e2015d605ad9ec93524f7076dd924a4731a")
+ (revision "2"))
+ (package
+ (name "graphite-web")
+ (version (git-version "1.1.10" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/graphite-project/graphite-web")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0bcc6jh7gyp8f54dzy4zza1z46gk3530r952pi86irf834z106sg"))))
+ (build-system pyproject-build-system)
+ (arguments
+ `(#:tests? #f ;XXX: Requires database, unable to run now
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "setup.py"
+ ;; Allow newer versions of django-tagging.
+ (("django-tagging==") "django-tagging>=")
+ ;; And Django.
+ (("Django>=3\\.2,<4") "Django>=4,<5"))))
+ ;; Don't install to /opt
+ (add-after 'unpack 'do-not-install-to-/opt
+ (lambda _ (setenv "GRAPHITE_NO_PREFIX" "1")))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (mkdir-p "storage/log/webapp")
+ (with-directory-excursion "webapp"
+ (invoke "./manage.py" "test" "--pythonpath=." "tests"
+ "-k" (string-join
+ (list
+ "not test_dashboard_save_temporary_xss_key"
+ "test_dashboard_save_temporary_xss_name")
+ " and not ")))))))))
+ (native-inputs
+ (list python-carbon
+ python-mock
+ python-pytest
+ python-rrdtool
+ python-setuptools
+ python-tzdata
+ python-wheel
+ python-whisper))
+ (propagated-inputs
+ (list python-cairocffi
+ python-django-4.2
+ python-django-tagging
+ python-pyparsing
+ python-pytz
+ python-six
+ python-urllib3))
+ (home-page "https://graphiteapp.org/")
+ (synopsis "Scalable realtime graphing system")
+ (description "Graphite is a scalable real-time graphing system that does
two things: store numeric time-series data, and render graphs of this data on
demand.")
- (license license:asl2.0)))
+ (license license:asl2.0))))
(define-public python-prometheus-client
(package
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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Subject: [PATCH v2 05/24] gnu: python-h2: Fix test-flags.
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* gnu/packages/python-web.scm (python-h2)[arguments]{test-flags}:
Fix quoting.
---
gnu/packages/python-web.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 4765ab2358..2438fba134 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -2483,9 +2483,9 @@ (define-public python-h2
(string-join
(list "not test_remotesettingschanged_repr"
;; This test exceededs the Hypothesis deadline.
- ,@(if (target-riscv64?)
- `("test_changing_max_frame_size")
- '())
+ #$@(if (target-riscv64?)
+ #~("test_changing_max_frame_size")
+ #~())
"test_streamreset_repr"
"test_settingsacknowledged_repr"
"test_connectionterminated_repr[None-None]"
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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Subject: [PATCH v2 04/24] gnu: Add python-rrdtool.
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* gnu/packages/monitoring.scm (python-rrdtool): New variable.
---
gnu/packages/monitoring.scm | 20 ++++++++++++++++++++
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm
index 01b554d9aa..b75500fc08 100644
--- a/gnu/packages/monitoring.scm
+++ b/gnu/packages/monitoring.scm
@@ -14,6 +14,7 @@
;;; Copyright © 2022 Hartmut Goebel <h.goebel@HIDDEN>
;;; Copyright © 2022 ( <paren@HIDDEN>
;;; Copyright © 2022 Mathieu Laparie <mlaparie@HIDDEN>
+;;; Copyright © 2025 Nicolas Graves <ngraves@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -839,6 +840,25 @@ (define-public pw
@end itemize")
(license license:bsd-2)))
+(define-public python-rrdtool
+ (package
+ (name "python-rrdtool")
+ (version "0.1.16")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "rrdtool" version))
+ (sha256
+ (base32 "0l8lbarzfwbwnq9jm9gv4mmrxgjlb9hbz27sa8b703qa7s5zy2jz"))))
+ (build-system pyproject-build-system)
+ (arguments (list #:tests? #f)) ; No tests in pypi archive
+ (inputs (list rrdtool))
+ (native-inputs (list python-setuptools python-wheel))
+ (home-page "https://github.com/commx/python-rrdtool")
+ (synopsis "Python bindings for rrdtool")
+ (description "This package provides Python bindings for rrdtool.")
+ (license license:lgpl2.1)))
+
(define-public python-statsd
(package
(name "python-statsd")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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* gnu/packages/monitoring.scm (python-carbon): Update to 1.1.10.
---
gnu/packages/monitoring.scm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm
index 9813b5ca67..01b554d9aa 100644
--- a/gnu/packages/monitoring.scm
+++ b/gnu/packages/monitoring.scm
@@ -433,23 +433,24 @@ (define-public python-whisper
(define-public python-carbon
(package
(name "python-carbon")
- (version "1.1.8")
+ (version "1.1.10")
(source
(origin
(method url-fetch)
(uri (pypi-uri "carbon" version))
(sha256
(base32
- "1wb91fipk1niciffq5xwqbh8g7rl7ghdam4m97cjbig12i5qr4cm"))))
- (build-system python-build-system)
+ "0p6yjxif5ly5wkllnaw41w2zy9y0nffgfk91v861fn6c26lmnfy1"))))
+ (build-system pyproject-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
;; Don't install to /opt
(add-after 'unpack 'do-not-install-to-/opt
(lambda _ (setenv "GRAPHITE_NO_PREFIX" "1") #t)))))
+ (native-inputs (list python-setuptools python-wheel))
(propagated-inputs
- (list python-cachetools python-txamqp python-urllib3 python-whisper))
+ (list python-cachetools python-twisted python-txamqp python-urllib3))
(home-page "https://graphiteapp.org/")
(synopsis "Backend data caching and persistence daemon for Graphite")
(description "Carbon is a backend data caching and persistence daemon for
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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* gnu/packages/python-science.scm (python-unyt)[arguments]
{test-flags}: Ignore failing test.
---
gnu/packages/python-science.scm | 3 +++
1 file changed, 3 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 2fa57f0ab5..ca259356cf 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -2526,6 +2526,9 @@ (define-public python-unyt
(sha256
(base32 "0jrq2vhan2h280h6cw1sm5hys2nzmf19w4py64k3nrkc320z9mni"))))
(build-system pyproject-build-system)
+ (arguments
+ ;; This is a Numpy DeprecationWarning, remove it on next update.
+ (list #:test-flags ''("-k" "not test_h5_io")))
;; Pint is optional, but we do not propagate it due to its size.
(native-inputs
(list python-pint
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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* gnu/packages/python-web.scm (gunicorn)[arguments]
{phases}: Remove 'check phase and migrate its flags to...
{test-flags}: ...here.
---
gnu/packages/python-web.scm | 16 +++++-----------
1 file changed, 5 insertions(+), 11 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 7495616f2e..4765ab2358 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -7304,23 +7304,17 @@ (define-public gunicorn
(outputs '("out" "doc"))
(build-system pyproject-build-system)
(arguments
- `(#:phases
+ `(#:test-flags
+ ;; Disable the geventlet tests because eventlet uses dnspython, which
+ ;; does not work in the build container due to lack of /etc/resolv.conf
+ '("--ignore=tests/workers/test_geventlet.py")
+ #:phases
(modify-phases %standard-phases
(add-after 'build 'build-doc
(lambda _
(invoke "make" "-C" "docs" "PAPER=a4" "html" "info")
(delete-file "docs/build/texinfo/Makefile")
(delete-file "docs/build/texinfo/Gunicorn.texi")))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (if tests?
- (begin
- (invoke "pytest" "-vv"
- ;; Disable the geventlet tests because eventlet uses
- ;; dnspython, which does not work in the build
- ;; container due to lack of /etc/resolv.conf, etc.
- "--ignore=tests/workers/test_geventlet.py"))
- (format #t "test suite not run~%"))))
(add-after 'install 'install-doc
(lambda* (#:key outputs #:allow-other-keys)
(let* ((doc (string-append (assoc-ref outputs "doc")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76835 <at> debbugs.gnu.org
Subject: [PATCH 15/15] gnu: Remove python-sphinx-4.
Date: Fri, 7 Mar 2025 20:15:13 +0100
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From: Nicolas Graves via Guix-patches via <guix-patches@HIDDEN>
* gnu/packages/sphinx.scm (python-sphinx-4): Delete variable.
---
gnu/packages/sphinx.scm | 19 -------------------
1 file changed, 19 deletions(-)
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 024bfe986a..58952049a1 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -267,25 +267,6 @@ (define-public python-sphinx-5
(texlive-updmap.cfg
(list texlive-cm-super texlive-tex-gyre))))))
-;; Some packages do not support Sphinx 5 yet. Remove when unused.
-(define-public python-sphinx-4
- (package
- (inherit python-sphinx-5)
- (version "4.5.0")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "Sphinx" version))
- (sha256
- (base32
- "1rp28jryxwy24y8vpacclqihbizyi6b1s6id86pibvm46ybcmy3v"))))
- (propagated-inputs
- (modify-inputs (package-propagated-inputs python-sphinx)
- (replace "python-docutils" python-docutils-0.15)))
- (native-inputs
- (modify-inputs (package-native-inputs python-sphinx)
- (delete python-flit-core)
- (append python-setuptools python-wheel)))))
-
(define-public python-sphinxcontrib-apidoc
(package
(name "python-sphinxcontrib-apidoc")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76835 <at> debbugs.gnu.org
Subject: [PATCH 13/15] gnu: python-sphinx-panels: Update input to
python-sphinx-5.
Date: Fri, 7 Mar 2025 20:15:11 +0100
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From: Nicolas Graves via Guix-patches via <guix-patches@HIDDEN>
* gnu/packages/sphinx.scm (python-sphinx-panels):
[arguments]{phases}: Add 'loosen-requirements phase.
[propagated-inputs]: Replace python-sphinx-4 by python-sphinx-5.
---
gnu/packages/sphinx.scm | 10 +++++++++-
1 file changed, 9 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 5f06cb04f5..024bfe986a 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -608,7 +608,15 @@ (define-public python-sphinx-panels
(sha256
(base32 "1ivqz6yv96a2jp59kylg1gbkrmzq6zwilppz3ij0zrkjn25zb97k"))))
(build-system pyproject-build-system)
- (propagated-inputs (list python-docutils-0.15 python-sphinx-4))
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'loosen-requirements
+ (lambda _
+ (substitute* "setup.py"
+ (("sphinx>=2,<5")
+ "sphinx>=2,<6")))))))
+ (propagated-inputs (list python-docutils-0.15 python-sphinx-5))
(native-inputs
(list python-pytest
python-pytest-regressions
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76835 <at> debbugs.gnu.org
Subject: [PATCH 14/15] gnu: python-numpy-documentation: Update python-sphinx
native-input.
Date: Fri, 7 Mar 2025 20:15:12 +0100
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From: Nicolas Graves via Guix-patches via <guix-patches@HIDDEN>
* gnu/packages/python-xyz.scm (python-numpy-documentation):
[arguments]{phases}: Add phase 'avoid-external-deps. Adapt phase
'install by removing sphinx.ext.autodoc extension.
[native-inputs]: Replace python-sphinx-4 by python-sphinx. Add
python-sphinx-design.
---
gnu/packages/python-xyz.scm | 14 +++++++++++++-
1 file changed, 13 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index bacfac6c42..6054a88562 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -9684,6 +9684,16 @@ (define-public python-numpy-documentation
#:tests? #f ;we're only generating the documentation
#:phases
#~(modify-phases %standard-phases
+ (add-after 'unpack 'avoid-external-deps
+ (lambda _
+ ;; XXX: Avoid theme-switcher to avoid sphinx error
+ ;; TemplateNotFound('theme-switcher.html')
+ ;; XXX: Avoid version-switcher because it depends on the value
+ ;; of external https://numpy.org/doc/_static/versions.json
+ (substitute* "doc/source/conf.py"
+ (("\
+\"navbar_end\": \\[\"theme-switcher\", \"version-switcher\", ")
+ "\"navbar_end\": ["))))
(add-before 'build 'add-gnu-freefont-to-texmf
(lambda _
;; XXX: The Sphinx-generated tex output specifies the GNU
@@ -9729,6 +9739,7 @@ (define-public python-numpy-documentation
(("\"contents\"") "'index'")
;; Disable Sphinx extensions that produce broken Texinfo.
((".*'numpydoc'.*") "")
+ ((".*'sphinx.ext.autodoc'.*") "")
((".*'sphinx.ext.autosummary'.*") ""))
(invoke "make" "info" sphinxopts)
;; Install the HTML documentation.
@@ -9752,7 +9763,8 @@ (define-public python-numpy-documentation
python-pandas
python-pydata-sphinx-theme
python-scipy ;used by matplotlib
- python-sphinx-4
+ python-sphinx
+ python-sphinx-design
python-sphinx-panels
texinfo
(texlive-updmap.cfg
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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To: 76835 <at> debbugs.gnu.org
Subject: [PATCH 12/15] gnu: Remove python-sphinx-autodoc-typehints-5.
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* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints-5): Delete variable.
---
gnu/packages/sphinx.scm | 7 -------
1 file changed, 7 deletions(-)
diff --git a/gnu/packages/sphinx.scm b/gnu/packages/sphinx.scm
index 6847592a99..5f06cb04f5 100644
--- a/gnu/packages/sphinx.scm
+++ b/gnu/packages/sphinx.scm
@@ -1234,13 +1234,6 @@ (define-public python-sphinx-autodoc-typehints
documenting acceptable argument types and return value types of functions.")
(license license:expat)))
-(define-public python-sphinx-autodoc-typehints-5
- (package/inherit python-sphinx-autodoc-typehints
- (propagated-inputs
- (modify-inputs
- (package-propagated-inputs python-sphinx-autodoc-typehints)
- (replace "python-sphinx" python-sphinx-5)))))
-
(define-public python-sphinx-pytest
(package
(name "python-sphinx-pytest")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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Subject: [PATCH 11/15] gnu: python-uqbar: Update to 7.0.0.
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* gnu/packages/graphviz.scm (python-uqbar): Update to 7.0.0.
[propagated-inputs]: Replace python-sphinx-5 by python-sphinx,
recursively.
---
gnu/packages/graphviz.scm | 11 +++--------
1 file changed, 3 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index defd53df73..c23369acc4 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -208,7 +208,7 @@ (define-public python-pygraphviz
(define-public python-uqbar
(package
(name "python-uqbar")
- (version "0.6.9")
+ (version "7.0.0")
(source
(origin
(method git-fetch)
@@ -217,7 +217,7 @@ (define-public python-uqbar
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "037qj3rymm6xzdpklddfhmfp2p1bq9fi3jrvxj6gmharphd5z869"))))
+ (base32 "0qa32d2z7bg3h26r18dv55g9lghw59wln7rkcciavyyjh553q430"))))
(build-system pyproject-build-system)
(arguments ; XXX: Disable failing tests.
(list #:test-flags '(list "tests" "-k" "not test_find_executable \
@@ -232,12 +232,7 @@ (define-public python-uqbar
python-setuptools
python-wheel))
(propagated-inputs
- (list python-black python-sphinx-5 python-unidecode
- (package/inherit python-sphinx-rtd-theme
- (propagated-inputs
- (modify-inputs
- (package-propagated-inputs python-sphinx-rtd-theme)
- (replace "python-sphinx" python-sphinx-5))))))
+ (list python-black python-sphinx python-unidecode python-sphinx-rtd-theme))
(home-page "https://github.com/josiah-wolf-oberholtzer/uqbar")
(synopsis "Tools for building documentation with Sphinx, Graphviz and LaTeX")
(description
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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To: 76835 <at> debbugs.gnu.org
Subject: [PATCH 10/15] gnu: Remove python-django-3.2.
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* gnu/packages/django.scm (python-django-3.2): Delete variable.
---
gnu/packages/django.scm | 20 ++------------------
1 file changed, 2 insertions(+), 18 deletions(-)
diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index cb9df0d2df..20522231ac 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -148,26 +148,10 @@ (define-public python-django-4.2
;; This CVE seems fixed since 4.2.1.
(lint-hidden-cve . ("CVE-2023-31047"))))))
-(define-public python-django-3.2
- (package
- (inherit python-django-4.2)
- (version "3.2.21")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "Django" version))
- (sha256
- (base32
- "0g3zm2glh76g31q06g6fwkwvkrphjj3mnap5sgk1hx3v9r44rpm5"))))
- (native-search-paths '()) ;no need for TZDIR
- (propagated-inputs
- (modify-inputs (package-propagated-inputs python-django-4.2)
- ;; Django 4.0 deprecated pytz in favor of Pythons built-in zoneinfo.
- (append python-pytz)))))
-
;; archivebox requires django>=3.1.3,<3.2
(define-public python-django-3.1.14
(package
- (inherit python-django-3.2)
+ (inherit python-django-4.2)
(version "3.1.14")
(source (origin
(method url-fetch)
@@ -176,7 +160,7 @@ (define-public python-django-3.1.14
(base32
"0ix3v2wlnplv78zxjrlw8z3hiap2d5mxvk0ny2fc65526shsb93j"))))
(propagated-inputs
- (modify-inputs (package-propagated-inputs python-django-3.2)
+ (modify-inputs (package-propagated-inputs python-django-4.2)
;; Django 4.0 deprecated pytz in favor of Pythons built-in zoneinfo.
(append python-pytz)))))
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76835 <at> debbugs.gnu.org
Subject: [PATCH 09/15] gnu: patchwork: Update to 3.2.1.
Date: Fri, 7 Mar 2025 20:15:07 +0100
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* gnu/packages/patchutils.scm (patchwork): Update to 3.2.1.
---
gnu/packages/patchutils.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/patchutils.scm b/gnu/packages/patchutils.scm
index 3cd3507b07..b2b84046b4 100644
--- a/gnu/packages/patchutils.scm
+++ b/gnu/packages/patchutils.scm
@@ -370,7 +370,7 @@ (define-public meld
(define-public patchwork
(package
(name "patchwork")
- (version "3.1.1")
+ (version "3.2.1")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -379,7 +379,7 @@ (define-public patchwork
(file-name (git-file-name name version))
(sha256
(base32
- "0is9d4gf93jcbyshyj2k3kjyrjnvimrm6bai6dbcx630md222j5w"))))
+ "04ikawdyhjwspxvhazbp5f5vym672y0jcw8rd2m75h9ipcpnyxim"))))
(build-system python-build-system)
(arguments
`(;; TODO: Tests require a running database
@@ -503,7 +503,7 @@ (define pythonpath
(inputs
(list python-wrapper))
(propagated-inputs
- (list python-django-3.2
+ (list python-django
;; TODO: Make this configurable
python-psycopg2
python-mysqlclient
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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Subject: [PATCH 07/15] gnu: python-nptyping: Ignore failing test.
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* gnu/packages/python-check.scm (python-nptyping)[arguments]
{test-flags}: Ignore failing test.
---
gnu/packages/python-check.scm | 2 ++
1 file changed, 2 insertions(+)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index c969499521..1138e287f1 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -2601,6 +2601,8 @@ (define-public python-nptyping
(list
#:test-flags
#~(list
+ ;; This one started failing with the last update of Numpy.
+ "--ignore=tests/test_beartype.py"
;; Multiple failures due to undefined names (typing package must be
;; too outdated, or perhaps they use a newer pandas).
"--ignore=tests/test_mypy.py"
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76835 <at> debbugs.gnu.org
Subject: [PATCH 08/15] gnu: python-cfn-lint: Update to 1.28.0.
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* gnu/packages/python-web.scm (python-cfn-lint): Update to 1.28.0.
---
gnu/packages/python-web.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 2438fba134..77a4e5c8f1 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1659,7 +1659,7 @@ (define-public python-cbor2
(define-public python-cfn-lint
(package
(name "python-cfn-lint")
- (version "1.22.1")
+ (version "1.28.0")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -1668,7 +1668,7 @@ (define-public python-cfn-lint
(file-name (git-file-name name version))
(sha256
(base32
- "1zz121r9yv1irwdbk07s7958fh43h3r3q39qcj0gv4kpgb0vdf32"))))
+ "0n1v05516s0zy64v1a7f7pj5h9lscvbkkwnlgmys7g8lydlgf0v4"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
Full text available.
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* gnu/packages/monitoring.scm (graphite-web): Update to 1.1.10-2.49c28e2.
---
gnu/packages/monitoring.scm | 99 +++++++++++++++++++++++--------------
1 file changed, 62 insertions(+), 37 deletions(-)
diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm
index b75500fc08..1009c32783 100644
--- a/gnu/packages/monitoring.scm
+++ b/gnu/packages/monitoring.scm
@@ -69,6 +69,7 @@ (define-module (gnu packages monitoring)
#:use-module (gnu packages prometheus)
#:use-module (gnu packages python)
#:use-module (gnu packages python-build)
+ #:use-module (gnu packages python-science)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages rrdtool)
@@ -461,45 +462,69 @@ (define-public python-carbon
(license license:asl2.0)))
(define-public graphite-web
- (package
- (name "graphite-web")
- (version "1.1.10")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "graphite-web" version))
- (sha256
- (base32
- "0nnk3kwn0b6bq9xnmv9bac6hpcbdgpgwf283c1ck5nm80panh61z"))))
- (build-system python-build-system)
- (arguments
- `(#:tests? #f ;XXX: not in PyPI release & requires database
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'relax-requirements
- (lambda _
- (substitute* "setup.py"
- ;; Allow newer versions of django-tagging.
- (("django-tagging==") "django-tagging>=")
- ;; And Django.
- (("Django>=1\\.8,<3\\.1") "Django>=1.8,<4"))))
- ;; Don't install to /opt
- (add-after 'unpack 'do-not-install-to-/opt
- (lambda _ (setenv "GRAPHITE_NO_PREFIX" "1") #t)))))
- (propagated-inputs
- (list python-cairocffi
- python-django-3.2
- python-django-tagging
- python-pyparsing
- python-pytz
- python-six
- python-urllib3))
- (home-page "https://graphiteapp.org/")
- (synopsis "Scalable realtime graphing system")
- (description "Graphite is a scalable real-time graphing system that does
+ (let ((commit "49c28e2015d605ad9ec93524f7076dd924a4731a")
+ (revision "2"))
+ (package
+ (name "graphite-web")
+ (version (git-version "1.1.10" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/graphite-project/graphite-web")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0bcc6jh7gyp8f54dzy4zza1z46gk3530r952pi86irf834z106sg"))))
+ (build-system pyproject-build-system)
+ (arguments
+ `(#:tests? #f ;XXX: Requires database, unable to run now
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "setup.py"
+ ;; Allow newer versions of django-tagging.
+ (("django-tagging==") "django-tagging>=")
+ ;; And Django.
+ (("Django>=3\\.2,<4") "Django>=4,<5"))))
+ ;; Don't install to /opt
+ (add-after 'unpack 'do-not-install-to-/opt
+ (lambda _ (setenv "GRAPHITE_NO_PREFIX" "1")))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (mkdir-p "storage/log/webapp")
+ (with-directory-excursion "webapp"
+ (invoke "./manage.py" "test" "--pythonpath=." "tests"
+ "-k" (string-join
+ (list
+ "not test_dashboard_save_temporary_xss_key"
+ "test_dashboard_save_temporary_xss_name")
+ " and not ")))))))))
+ (native-inputs
+ (list python-carbon
+ python-mock
+ python-pytest
+ python-rrdtool
+ python-setuptools
+ python-tzdata
+ python-wheel
+ python-whisper))
+ (propagated-inputs
+ (list python-cairocffi
+ python-django-4.2
+ python-django-tagging
+ python-pyparsing
+ python-pytz
+ python-six
+ python-urllib3))
+ (home-page "https://graphiteapp.org/")
+ (synopsis "Scalable realtime graphing system")
+ (description "Graphite is a scalable real-time graphing system that does
two things: store numeric time-series data, and render graphs of this data on
demand.")
- (license license:asl2.0)))
+ (license license:asl2.0))))
(define-public python-prometheus-client
(package
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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* gnu/packages/python-web.scm (python-h2)[arguments]{test-flags}:
Fix quoting.
---
gnu/packages/python-web.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 4765ab2358..2438fba134 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -2483,9 +2483,9 @@ (define-public python-h2
(string-join
(list "not test_remotesettingschanged_repr"
;; This test exceededs the Hypothesis deadline.
- ,@(if (target-riscv64?)
- `("test_changing_max_frame_size")
- '())
+ #$@(if (target-riscv64?)
+ #~("test_changing_max_frame_size")
+ #~())
"test_streamreset_repr"
"test_settingsacknowledged_repr"
"test_connectionterminated_repr[None-None]"
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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* gnu/packages/monitoring.scm (python-rrdtool): New variable.
---
gnu/packages/monitoring.scm | 20 ++++++++++++++++++++
1 file changed, 20 insertions(+)
diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm
index 01b554d9aa..b75500fc08 100644
--- a/gnu/packages/monitoring.scm
+++ b/gnu/packages/monitoring.scm
@@ -14,6 +14,7 @@
;;; Copyright © 2022 Hartmut Goebel <h.goebel@HIDDEN>
;;; Copyright © 2022 ( <paren@HIDDEN>
;;; Copyright © 2022 Mathieu Laparie <mlaparie@HIDDEN>
+;;; Copyright © 2025 Nicolas Graves <ngraves@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -839,6 +840,25 @@ (define-public pw
@end itemize")
(license license:bsd-2)))
+(define-public python-rrdtool
+ (package
+ (name "python-rrdtool")
+ (version "0.1.16")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "rrdtool" version))
+ (sha256
+ (base32 "0l8lbarzfwbwnq9jm9gv4mmrxgjlb9hbz27sa8b703qa7s5zy2jz"))))
+ (build-system pyproject-build-system)
+ (arguments (list #:tests? #f)) ; No tests in pypi archive
+ (inputs (list rrdtool))
+ (native-inputs (list python-setuptools python-wheel))
+ (home-page "https://github.com/commx/python-rrdtool")
+ (synopsis "Python bindings for rrdtool")
+ (description "This package provides Python bindings for rrdtool.")
+ (license license:lgpl2.1)))
+
(define-public python-statsd
(package
(name "python-statsd")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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* gnu/packages/python-web.scm (gunicorn)[arguments]
{phases}: Remove 'check phase and migrate its flags to...
{test-flags}: ...here.
---
gnu/packages/python-web.scm | 16 +++++-----------
1 file changed, 5 insertions(+), 11 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 7495616f2e..4765ab2358 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -7304,23 +7304,17 @@ (define-public gunicorn
(outputs '("out" "doc"))
(build-system pyproject-build-system)
(arguments
- `(#:phases
+ `(#:test-flags
+ ;; Disable the geventlet tests because eventlet uses dnspython, which
+ ;; does not work in the build container due to lack of /etc/resolv.conf
+ '("--ignore=tests/workers/test_geventlet.py")
+ #:phases
(modify-phases %standard-phases
(add-after 'build 'build-doc
(lambda _
(invoke "make" "-C" "docs" "PAPER=a4" "html" "info")
(delete-file "docs/build/texinfo/Makefile")
(delete-file "docs/build/texinfo/Gunicorn.texi")))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (if tests?
- (begin
- (invoke "pytest" "-vv"
- ;; Disable the geventlet tests because eventlet uses
- ;; dnspython, which does not work in the build
- ;; container due to lack of /etc/resolv.conf, etc.
- "--ignore=tests/workers/test_geventlet.py"))
- (format #t "test suite not run~%"))))
(add-after 'install 'install-doc
(lambda* (#:key outputs #:allow-other-keys)
(let* ((doc (string-append (assoc-ref outputs "doc")
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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* gnu/packages/python-science.scm (python-unyt)[arguments]
{test-flags}: Ignore failing test.
---
gnu/packages/python-science.scm | 3 +++
1 file changed, 3 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 2fa57f0ab5..ca259356cf 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -2526,6 +2526,9 @@ (define-public python-unyt
(sha256
(base32 "0jrq2vhan2h280h6cw1sm5hys2nzmf19w4py64k3nrkc320z9mni"))))
(build-system pyproject-build-system)
+ (arguments
+ ;; This is a Numpy DeprecationWarning, remove it on next update.
+ (list #:test-flags ''("-k" "not test_h5_io")))
;; Pint is optional, but we do not propagate it due to its size.
(native-inputs
(list python-pint
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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From: Nicolas Graves <ngraves@HIDDEN>
To: 76835 <at> debbugs.gnu.org
Subject: [PATCH 03/15] gnu: python-carbon: Update to 1.1.10.
Date: Fri, 7 Mar 2025 20:15:01 +0100
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* gnu/packages/monitoring.scm (python-carbon): Update to 1.1.10.
---
gnu/packages/monitoring.scm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/monitoring.scm b/gnu/packages/monitoring.scm
index 9813b5ca67..01b554d9aa 100644
--- a/gnu/packages/monitoring.scm
+++ b/gnu/packages/monitoring.scm
@@ -433,23 +433,24 @@ (define-public python-whisper
(define-public python-carbon
(package
(name "python-carbon")
- (version "1.1.8")
+ (version "1.1.10")
(source
(origin
(method url-fetch)
(uri (pypi-uri "carbon" version))
(sha256
(base32
- "1wb91fipk1niciffq5xwqbh8g7rl7ghdam4m97cjbig12i5qr4cm"))))
- (build-system python-build-system)
+ "0p6yjxif5ly5wkllnaw41w2zy9y0nffgfk91v861fn6c26lmnfy1"))))
+ (build-system pyproject-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
;; Don't install to /opt
(add-after 'unpack 'do-not-install-to-/opt
(lambda _ (setenv "GRAPHITE_NO_PREFIX" "1") #t)))))
+ (native-inputs (list python-setuptools python-wheel))
(propagated-inputs
- (list python-cachetools python-txamqp python-urllib3 python-whisper))
+ (list python-cachetools python-twisted python-txamqp python-urllib3))
(home-page "https://graphiteapp.org/")
(synopsis "Backend data caching and persistence daemon for Graphite")
(description "Carbon is a backend data caching and persistence daemon for
--
2.48.1
guix-patches@HIDDEN:bug#76835; Package guix-patches.
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Fri, 07 Mar 2025 13:50:38 -0500 Received: from director5.ghost.mail-out.ovh.net (unknown [10.109.140.131]) by mo584.mail-out.ovh.net (Postfix) with ESMTP id 4Z8b2Z1L98z1SJF for <guix-patches@HIDDEN>; Fri, 7 Mar 2025 18:50:30 +0000 (UTC) Received: from ghost-submission-5b5ff79f4f-x2q2r (unknown [10.110.164.164]) by director5.ghost.mail-out.ovh.net (Postfix) with ESMTPS id DE1391FE64; Fri, 7 Mar 2025 18:50:29 +0000 (UTC) Received: from ngraves.fr ([37.59.142.100]) by ghost-submission-5b5ff79f4f-x2q2r with ESMTPSA id lZ+CKPU/y2eZOCAACxjVtQ (envelope-from <ngraves@HIDDEN>); Fri, 07 Mar 2025 18:50:29 +0000 Authentication-Results: garm.ovh; auth=pass (GARM-100R00391e20a88-0e72-446c-b122-ab8d6d6999ec, 93CD87FFD4632086FD827B47E208BFE70AFEC0F0) smtp.auth=ngraves@HIDDEN X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves <ngraves@HIDDEN> To: guix-patches@HIDDEN Subject: [PATCH python-team 00/15] Some further python fixes Date: Fri, 7 Mar 2025 19:48:39 +0100 Message-ID: <20250307185027.11928-1-ngraves@HIDDEN> X-Mailer: git-send-email 2.48.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 4608871269549531874 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduuddugeefucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffoggfgsedtkeertdertddtnecuhfhrohhmpefpihgtohhlrghsucfirhgrvhgvshcuoehnghhrrghvvghssehnghhrrghvvghsrdhfrheqnecuggftrfgrthhtvghrnhepkeffgeetfffgffejgeejvdffgfdtvdeuueetgfefuedvjeegvdegjeejveeuueevnecukfhppeduvdejrddtrddtrddupdeltddrledvrdduudejrddugeegpdefjedrheelrddugedvrddutddtnecuvehluhhsthgvrhfuihiivgeptdenucfrrghrrghmpehinhgvthepuddvjedrtddrtddruddpmhgrihhlfhhrohhmpehnghhrrghvvghssehnghhrrghvvghsrdhfrhdpnhgspghrtghpthhtohepuddprhgtphhtthhopehguhhigidqphgrthgthhgvshesghhnuhdrohhrghdpoffvtefjohhsthepmhhoheekgegmpdhmohguvgepshhmthhpohhuth DKIM-Signature: a=rsa-sha256; bh=Ql4tJCzfBXfwRxbefCsCORN0yTqYRsJViqpehJH+/Q8=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1741373430; v=1; b=T7bL7mRjuQ4+Z3UyuwEPKRBsxOj2nC5YbGaK1MRCGVNLy7uu9K5v+dAmCG9AWAe2YEu4QGX+ aEPgHT9QQikLXAika/qnULviRciDaAftrWoOzK/HS/N7rAD+FO+dm65nnAp1kRxFtMq4j/sFMrX gy8Aq+ZkgMicK/lBpghB8nzSEIb5heau4RW0CIcSzToKRuae3ByXnDcUwfhn8svf0IY27PLRyb6 qXhGiwTsFZr13ccQ6R0ix27mcWNrt7gpgE4OoZzXwpfj8ttCNUKBciiQRBAyqaEXqflYGbifHe5 0KdYZ/HoSI3hxA46N0JIzn34WJqTEAyVg/5towKvmDP0Q== Received-SPF: pass client-ip=46.105.40.176; envelope-from=ngraves@HIDDEN; helo=9.mo584.mail-out.ovh.net X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H3=0.001, RCVD_IN_MSPIKE_WL=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, RCVD_IN_VALIDITY_SAFE_BLOCKED=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit Cc: Nicolas Graves <ngraves@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -0.0 (/) We might want to check out with Chris if nothing is broken with an update of patchwork. Nicolas Graves (12): gnu: gunicorn: Migrate 'check phase to pyproject-build-system. gnu: python-unyt: Avoid deprecation failure in tests. gnu: python-carbon: Update to 1.1.10. gnu: Add python-rrdtool. gnu: python-h2: Fix test-flags. gnu: graphite-web: Update to 1.1.10-2.49c28e2. gnu: python-nptyping: Ignore failing test. gnu: python-cfn-lint: Update to 1.28.0. gnu: patchwork: Update to 3.2.1. gnu: Remove python-django-3.2. gnu: python-uqbar: Update to 7.0.0. gnu: Remove python-sphinx-autodoc-typehints-5. Nicolas Graves via Guix-patches via (3): gnu: python-sphinx-panels: Update input to python-sphinx-5. gnu: python-numpy-documentation: Update python-sphinx native-input. gnu: Remove python-sphinx-4. gnu/packages/django.scm | 20 +---- gnu/packages/graphviz.scm | 11 +-- gnu/packages/monitoring.scm | 128 ++++++++++++++++++++++---------- gnu/packages/patchutils.scm | 6 +- gnu/packages/python-check.scm | 2 + gnu/packages/python-science.scm | 3 + gnu/packages/python-web.scm | 26 +++---- gnu/packages/python-xyz.scm | 14 +++- gnu/packages/sphinx.scm | 36 +++------ 9 files changed, 132 insertions(+), 114 deletions(-) -- 2.48.1
Nicolas Graves <ngraves@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#76835; Package guix-patches.
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