Package: guix-patches;
Reported by: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Date: Sat, 22 Mar 2025 20:28:02 UTC
Severity: normal
Tags: patch
Done: Sharlatan Hellseher <sharlatanus <at> gmail.com>
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andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:28:02 GMT) Full text and rfc822 format available.Sharlatan Hellseher <sharlatanus <at> gmail.com>:andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org.
(Sat, 22 Mar 2025 20:28:02 GMT) Full text and rfc822 format available.Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: guix-patches <at> gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 00/34] Astro update 2025/03. Date: Sat, 22 Mar 2025 20:27:29 +0000
> Кричат скворцы во все концы:
> «Весна идет! Весне дорогу!»
Hi Guix!
This month is a really refreshing one, yes it’s a Spring! In packaging
routines there are some fresh spring stream appear.
* The main highlights
- We are still on 100% build success for the whole astro collection at least
with x86_64 architecture, check it out: "guix build -M8 $(guix package -A |
awk '/astronomy.scm/{print $1"@"$2}')"
- CFITSIO, a low level FITS manipulation library, has been refreshed to the
latest available version from 4.5.0 to 4.6.0.
- TEMPO and TEMPO2 were added, low level C/C++ based pulsar timing software.
- Even more low level and Python packages were added (12!) this month,
initiating a graph grow of the future even more dependent packages.
* The log
** added [12/12]
- [X] python-algopy Algorithmic Differentation in Python
- [X] python-fitsblender Aggregate values in FITS headers
- [X] python-numdifftools Solves automatic numerical differentiation problems
- [X] python-pint-pulsar Software for high-precision pulsar timing
- [X] python-simplify-polyline Simplify an open or closed polyline
- [X] python-streamtracer Rapid streamline tracing in Python
- [X] python-stsci-skypac Sky matching on image mosaic
- [X] python-stsci-tools Collection of STScI utility functions
- [X] python-stwcs WCS based distortion models and coordinate transformation
- [X] python-sunkit-magex Solar Magnetic field Extrapolation
- [X] tempo2 High precision pulsar timing tool
- [X] tempo Pulsar timing data analysis program
** updated [20/20]
Version updates and the first level of dependents built with "guix build -P1
<package-name>".
- [X] cfitsio 4.5.0->4.6.0
- /gnu/store/mlxg0hwgnfhy0mx163swkcl702vlv2yi-cfitsio-4.6.0
- /gnu/store/q5v13grgysvj2smvd8f7kfmr4p0lz893-sextractor-2.28.2
- /gnu/store/6jjrzrwpv97szsqah2lw96a6a66y6cs6-wcslib-7.12
- /gnu/store/d7n85w8jn3f7icmyhksbci1hs25rxxpy-indi-1.9.9
- /gnu/store/ik0dfpamilj18m9c6kjm1q5448ml8fyg-phd2-2.6.13
- /gnu/store/xky97r47k6hh0gymywk9af0zl6ax8fk0-alfa-2.2
- /gnu/store/zhnhgyg5xlc08vj2sjzd1dsk5g8yla55-siril-1.3.3
- /gnu/store/3z36qf88496isgcy1wykq06ax65ffj5h-splash-3.11.1
- /gnu/store/wmlrvcgmvq5q0svac1r7g64ddy945y03-healpix-3.8.3
- /gnu/store/6mih2ks46jgsypkr1vifaihc54jg62v3-ccfits-2.7
- /gnu/store/gl1marm9r2bh9qvzjs5z32gv8a21227r-swarp-2.41.5
- /gnu/store/bbjq67vzvij391ndv786m8f3vyi6i3xx-indi-2.1.2.1
- /gnu/store/frhr57mlqqihcfywfn2v26ph87gi697v-python-casacore-3.6.1
- /gnu/store/r7b450ipd7gxpzyyp507sb5xwnjy93zr-imppg-2.0.0
- /gnu/store/24445jciwk9ihzpwjfinmkvk9997x2yl-healpix-cxx-3.8.3
- /gnu/store/xadzny2i947nb78ncrr2wmapclxa4dkb-casacore-3.7.1
- /gnu/store/gdrgp5025vk0bi8wr7sazpri9k9ny731-python-fitsio-1.2.5
- /gnu/store/rnnl9cvm45yvdvrnvd5qflx5760gwhxc-aoflagger-3.4.0
- /gnu/store/kagppgq5dwv0pm39pq9v6x2z79nyif1r-glnemo2-1.21.0
- /gnu/store/8whijcwdwb4w1nkb15d3lzw32nmp5nq9-python-healpy-1.18.0
- /gnu/store/zmmm0pf63g049kgff8mp0gf47bnz4ria-wcslib-8.4
- /gnu/store/j7bmbw7y6dc7q958nvpjka4jlyvma48d-julia-cfitsio-jll-4.0.0+0
- /gnu/store/9nli4b34dkvx8irgzpzyfik1ynr4xm20-gwenview-24.12.3
- /gnu/store/l8iyh93jchb5q1d8a3hksynyn63sh551-labplot-2.10.1
- [X] python-astroquery adjust inputs.
- /gnu/store/z98j5skxsvajysmhk83h7ppcym5x2wh5-python-astroquery-0.4.9.post1
- /gnu/store/3gdx4bjn7vyhx3zmpyvzbfbwg4wfdw5b-python-poliastro-0.17.0
- /gnu/store/zyr6p1m3nc2r3d2k8kbzj0klybvy388p-ginga-qt5-5.2.0
- /gnu/store/mw848fn623kbixsyc049pxjkikymcmcv-python-ginga-5.2.0
- /gnu/store/4lhqzc4m9kzf3rqnaf8zv88fqxv844nx-python-webbpsf-1.5.0
- /gnu/store/wxj2rris8hmlzpv181fggqw3qgxqikkl-python-astroplan-0.10.1
- /gnu/store/58zdr1rpanxdlzhn4b5il157pd3lcl1c-python-astrocut-0.12.0
- /gnu/store/1k2xhc94q0bn6gqmw4k4x0n8rbnyhsra-python-sbpy-0.5.0
- [X] python-crds 12.0.9->12.1.4
- /gnu/store/lj78jlw21xsnk6zbmlg8bg2h99aqyhka-python-crds-12.1.4
- /gnu/store/31mab4f8p1pyp3479066n93dr9nchg0i-python-ci-watson-0.8.0
- /gnu/store/fq0h83gp0klr2sj74gfrgjszcaim81qq-python-stpipe-0.8.1
- /gnu/store/36m8xwdxg7gq5k1c5qpjrw4n6qbfxwwk-python-jwst-1.17.1
- /gnu/store/md6nf7cgdisjh3a0knb5kz7bb5wg6czp-python-stdatamodels-2.2.0
- [X] python-astropy-iers-data 0.2025.2.17.0.34.13->0.2025.3.17.0.34.53
- /gnu/store/smhb3pnyg0ginh15csjfw95miabm81r0-python-astropy-iers-data-0.2025.3.17.0.34.53
- /gnu/store/lalznz9q8kbay67fds74r8izfv7r30g0-python-astropy-minimal-6.1.7
- /gnu/store/85h6jh6m703achzw7bqcpm71pf7c5174-python-astropy-6.1.7
- [X] casacore 3.6.1->3.7.1
- /gnu/store/xadzny2i947nb78ncrr2wmapclxa4dkb-casacore-3.7.1
- /gnu/store/frhr57mlqqihcfywfn2v26ph87gi697v-python-casacore-3.6.1
- /gnu/store/rnnl9cvm45yvdvrnvd5qflx5760gwhxc-aoflagger-3.4.0
- [X] python-mpl-animators 1.2.0->1.2.1
- /gnu/store/zy5hgq4q33kgbk7grkgbqfn36dxda7pb-python-mpl-animators-1.2.1
- /gnu/store/rsniac5h5kvlb9w7qj6yfsnf3zwp5pfr-python-ndcube-2.3.1
- /gnu/store/6pim81r186ilhd7siy62k6xj6w533r7l-python-sunpy-6.0.4
- [X] python-pixell 0.28.0->0.28.4
- /gnu/store/5dvnpikn647czj1xk9pr1pwa8jh1x17i-python-pixell-0.28.4
- /gnu/store/wk3vijrbccb4y05m4g09alya0x778zrx-python-mapsims-2.6.0
- /gnu/store/9syl7mx3lybwrvk0qj691wiwvl6av5j0-python-pysm3-3.4.1a1
- [X] calcmysky (calcmysky-qt5) 0.3.3->0.3.4
- /gnu/store/b92khld5x7d007i16hzpx65csyqp6v8c-calcmysky-qt5-0.3.4
- /gnu/store/685imiaa7vmly6yf8miy6rc4xahn97d2-stellarium-24.4-0.60b6bec
- [X] ccfits 2.6->2.7
- /gnu/store/6mih2ks46jgsypkr1vifaihc54jg62v3-ccfits-2.7
- /gnu/store/kagppgq5dwv0pm39pq9v6x2z79nyif1r-glnemo2-1.21.0
- [X] python-ducc0 0.36.0->0.37.1
- /gnu/store/ap040kv53xjjf4pl8hhbdrhm5ppvcadw-python-ducc0-0.37.1
- /gnu/store/5dvnpikn647czj1xk9pr1pwa8jh1x17i-python-pixell-0.28.4
- [X] python-skyfield 1.49->1.52
- /gnu/store/vrrp0nghja03jlfslpszi10mpvqm92l5-python-skyfield-1.52
- /gnu/store/85h6jh6m703achzw7bqcpm71pf7c5174-python-astropy-6.1.7
- [X] python-specreduce 1.4.1->1.5.1
- /gnu/store/wcacrav0irrbjsp7amwql53jq5f564h4-python-specreduce-1.5.1
- /gnu/store/zsdn56l677l5qnvcv7qjdam0b5i7bsyi-python-glue-astronomy-0.10.0
- [X] python-stpipe 0.8.0->0.8.1
- /gnu/store/fq0h83gp0klr2sj74gfrgjszcaim81qq-python-stpipe-0.8.1
- /gnu/store/36m8xwdxg7gq5k1c5qpjrw4n6qbfxwwk-python-jwst-1.17.1
- [X] python-sunpy-soar 1.11.0->1.11.1
- /gnu/store/4q67m5cmlv7c8qwha6f3i738nn27d4d1-python-sunpy-soar-1.11.1
- /gnu/store/6dsrk74c6x8azqvp6zl65298w3am8b2r-python-radiospectra-0.6.1
- [X] imppg 1.9.2-beta->2.0.0
- /gnu/store/r7b450ipd7gxpzyyp507sb5xwnjy93zr-imppg-2.0.0
- [X] python-glue-qt 0.3.2->0.3.3
- /gnu/store/x0gpnac3zqag1z9kf4rw5a0n3i8nxfw7-python-glue-qt-0.3.3
- [X] python-pysat 3.2.1->3.2.2
- /gnu/store/nxy76cdck7xw7fr768m6lj8sg32xlwkh-python-pysat-3.2.2
- [X] python-radiospectra 0.6.0->0.6.1
- /gnu/store/6dsrk74c6x8azqvp6zl65298w3am8b2r-python-radiospectra-0.6.1
- [X] python-sunkit-image 0.6.0->0.6.1
- /gnu/store/haxzq4ygjiaz3r7dbjwax2nsz7a1a1x2-python-sunkit-image-0.6.1
- [X] python-viresclient 0.12.2->0.12.3
- /gnu/store/dldixv0jpm1xmcbvy7ww3n5rzkijr74f-python-viresclient-0.12.3
** issues
More and more packages in astro collection started demanding on Python 3.11+
and NumPy 1.25+/2+ and cannont be updated on the current master, tracking them
for vsiability and wait when python-team brings us a fresh Python 3.11 and
NumPy 1.26.
- libsep would be upgraded from 1.4.0 to 1.4.1; needs NumPy 1.26.4, let’s wait
python-team merge
- imppg Upstream issue on brocken tests
https://github.com/GreatAttractor/imppg/issues/34
- python-naima would be upgraded from 0.10.0 to 0.10.2; NumPy 2+ is requried
- python-photutils would be upgraded from 1.10.0 to 1.11.0; requires
numpy>=1.25 and resolve new build issues. release which has a lot of fixes.
- python-webbpsf would be upgraded from 1.5.0 to 2.0.0; project in migration
to https://github.com/spacetelescope/stpsf
- python-stdatamodels would be upgraded from 2.2.0 to 3.0.1; Requires Python
3.11 and NumPy 1.25+
- python-stsci-stimage would be upgraded from 0.2.10 to 0.3.0; Requires NumPy
2.0+
- python-sunpy would be upgraded from 6.0.4 to 6.1.1; Requires NumPy 2.0+
1.2.4. the build stats for x8664-linux:
--8<---------------cut here---------------start------------->8---
> ./pre-inst-env guix build aacircuit calcmysky casacore ccfits cfitsio imppg python-algopy
python-astropy-iers-data python-astroquery python-crds python-ducc0 python-fitsblender
python-glue-qt python-mpl-animators python-numdifftools python-pint-pulsar python-pixell
python-pysat python-radiospectra python-simplify-polyline python-skyfield python-specreduce
python-stpipe python-streamtracer python-stsci-skypac python-stsci-tools python-stwcs
python-sunkit-image python-sunkit-magex python-sunpy-soar python-viresclient tempo tempo2
/gnu/store/q9b8zg6np6yj7y9hl10xf50w40yj7g15-aacircuit-0-0.18635c8
/gnu/store/ca5f056nci4cdnpjsrhqcyhq8z32jbj0-calcmysky-0.3.4
/gnu/store/xadzny2i947nb78ncrr2wmapclxa4dkb-casacore-3.7.1
/gnu/store/6mih2ks46jgsypkr1vifaihc54jg62v3-ccfits-2.7
/gnu/store/mlxg0hwgnfhy0mx163swkcl702vlv2yi-cfitsio-4.6.0
/gnu/store/r7b450ipd7gxpzyyp507sb5xwnjy93zr-imppg-2.0.0
/gnu/store/91bdjn5y353s363a9bqaj71ag22a3v93-python-algopy-0.6.0
/gnu/store/smhb3pnyg0ginh15csjfw95miabm81r0-python-astropy-iers-data-0.2025.3.17.0.34.53
/gnu/store/z98j5skxsvajysmhk83h7ppcym5x2wh5-python-astroquery-0.4.9.post1
/gnu/store/lj78jlw21xsnk6zbmlg8bg2h99aqyhka-python-crds-12.1.4
/gnu/store/ap040kv53xjjf4pl8hhbdrhm5ppvcadw-python-ducc0-0.37.1
/gnu/store/ppzswph4rj0i1y7pfihvc78yw7a9iz8j-python-fitsblender-0.4.4
/gnu/store/x0gpnac3zqag1z9kf4rw5a0n3i8nxfw7-python-glue-qt-0.3.3
/gnu/store/zy5hgq4q33kgbk7grkgbqfn36dxda7pb-python-mpl-animators-1.2.1
/gnu/store/i50nq75n56882h69laqgz5zjwiws9baf-python-numdifftools-0.9.41
/gnu/store/0qc07223x49pcgmz8zi1cj2wsjcjprmx-python-pint-pulsar-1.1.1
/gnu/store/5dvnpikn647czj1xk9pr1pwa8jh1x17i-python-pixell-0.28.4
/gnu/store/nxy76cdck7xw7fr768m6lj8sg32xlwkh-python-pysat-3.2.2
/gnu/store/6dsrk74c6x8azqvp6zl65298w3am8b2r-python-radiospectra-0.6.1
/gnu/store/blnjh2m10yrfxq9q5rvcsjf64kq9z47y-python-simplify-polyline-0.1.0
/gnu/store/vrrp0nghja03jlfslpszi10mpvqm92l5-python-skyfield-1.52
/gnu/store/wcacrav0irrbjsp7amwql53jq5f564h4-python-specreduce-1.5.1
/gnu/store/fq0h83gp0klr2sj74gfrgjszcaim81qq-python-stpipe-0.8.1
/gnu/store/y535mrj2dsh59alwkax9g8ic8y6f3l7j-python-streamtracer-2.4.0
/gnu/store/2vwgb6f8kb7k79navjyjznvfahmk8iz3-python-stsci-skypac-1.0.10
/gnu/store/gnsfpzf21bqda6gl3zpx6ss7f09njhnc-python-stsci-tools-4.2.0
/gnu/store/vvlaax1x2rf93xgc9z2imar2i55fw7b2-python-stwcs-1.7.3
/gnu/store/haxzq4ygjiaz3r7dbjwax2nsz7a1a1x2-python-sunkit-image-0.6.1
/gnu/store/fk3fp5qziw5fklbn6ifzgyy17cxh6n0x-python-sunkit-magex-1.0.0
/gnu/store/4q67m5cmlv7c8qwha6f3i738nn27d4d1-python-sunpy-soar-1.11.1
/gnu/store/dldixv0jpm1xmcbvy7ww3n5rzkijr74f-python-viresclient-0.12.3
/gnu/store/8dvkz61jawk85gdcm4qmlfwlnhdl64hi-tempo-13.103
/gnu/store/5qq80fj615ns3ids389ghxxjds3dq3b1-tempo2-2025.02.1
--8<---------------cut here---------------end--------------->8---
--8<---------------cut here---------------start------------->8---
> ./pre-inst-env guix refresh --list-dependent calcmysky casacore ccfits cfitsio imppg python-algopy
python-astropy-iers-data python-astroquery python-crds python-ducc0 python-fitsblender
python-glue-qt python-mpl-animators python-numdifftools python-pint-pulsar python-pixell
python-pysat python-radiospectra python-simplify-polyline python-skyfield python-specreduce
python-stpipe python-streamtracer python-stsci-skypac python-stsci-tools python-stwcs
python-sunkit-image python-sunkit-magex python-sunpy-soar python-viresclient tempo tempo2
Building the following 52 packages would ensure 132 dependent packages are rebuilt: healpix <at> 3.8.3
swarp <at> 2.41.5 imppg <at> 2.0.0 julia-wcs <at> 0.6.2 splash <at> 3.11.1 gnuastro <at> 0.22 siril <at> 1.3.3
python-lofar-h5plot <at> 2.9.1 aoflagger <at> 3.4.0 sextractor <at> 2.28.2 alfa <at> 2.2 glnemo2 <at> 1.21.0 phd2 <at> 2.6.13
stellarium <at> 24.4-0.60b6bec julia-fitsio <at> 0.17.1 labplot <at> 2.10.1 gwenview <at> 24.12.3
python-viresclient <at> 0.12.3 python-asdf-zarr <at> 0.0.4 python-asdf-compression <at> 0.0.1-1.7cfd07c
python-coolest <at> 0.1.9 python-naima <at> 0.10.0 python-zodipy <at> 1.1.0 scamp <at> 2.13.1 python-sunkit-image <at> 0.6.1
python-kanon <at> 0.6.6 python-pint-pulsar <at> 1.1.1 python-mapsims <at> 2.6.0 python-astroplan <at> 0.10.1
python-cesium <at> 0.12.1 python-spisea <at> 2.1.13 python-sndata <at> 1.3.0 ginga-qt5 <at> 5.2.0 python-halotools <at> 0.9.3
python-statmorph <at> 0.6.1 python-poliastro <at> 0.17.0 python-holodeck <at> 1.5.2 python-regularizepsf <at> 1.0.2
python-astroalign <at> 2.6.1 python-astrocut <at> 0.12.0 python-sbpy <at> 0.5.0 python-webbpsf <at> 1.5.0
python-acstools <at> 3.7.2 python-glue-qt <at> 0.3.3 python-pyxsim <at> 4.4.2 python-yt-astro-analysis <at> 1.1.3
python-glue-astronomy <at> 0.10.0 python-jwst-reffiles <at> 1.0.1 python-sunkit-magex <at> 1.0.0
python-fitsblender <at> 0.4.4 python-stsci-skypac <at> 1.0.10 python-radiospectra <at> 0.6.1
/gnu/store/wmlrvcgmvq5q0svac1r7g64ddy945y03-healpix-3.8.3
/gnu/store/gl1marm9r2bh9qvzjs5z32gv8a21227r-swarp-2.41.5
/gnu/store/r7b450ipd7gxpzyyp507sb5xwnjy93zr-imppg-2.0.0
/gnu/store/5fc9hlsc9pmg74kgikq4whzr176kyaga-julia-wcs-0.6.2
/gnu/store/3z36qf88496isgcy1wykq06ax65ffj5h-splash-3.11.1
/gnu/store/xpb83yid94n569n1r20impnywgardp1q-gnuastro-0.22
/gnu/store/zhnhgyg5xlc08vj2sjzd1dsk5g8yla55-siril-1.3.3
/gnu/store/5f45klgvr41rimqn1l8m0a8s5nhnjpz7-python-lofar-h5plot-2.9.1
/gnu/store/rnnl9cvm45yvdvrnvd5qflx5760gwhxc-aoflagger-3.4.0
/gnu/store/q5v13grgysvj2smvd8f7kfmr4p0lz893-sextractor-2.28.2
/gnu/store/xky97r47k6hh0gymywk9af0zl6ax8fk0-alfa-2.2
/gnu/store/kagppgq5dwv0pm39pq9v6x2z79nyif1r-glnemo2-1.21.0
/gnu/store/ik0dfpamilj18m9c6kjm1q5448ml8fyg-phd2-2.6.13
/gnu/store/vmr4nbagns6wfahn84snjnancapjiy5f-stellarium-24.4-0.60b6bec
/gnu/store/g33cx2ndh3rypc243biz04npprasl31z-julia-fitsio-0.17.1
/gnu/store/l8iyh93jchb5q1d8a3hksynyn63sh551-labplot-2.10.1
/gnu/store/9nli4b34dkvx8irgzpzyfik1ynr4xm20-gwenview-24.12.3
/gnu/store/dldixv0jpm1xmcbvy7ww3n5rzkijr74f-python-viresclient-0.12.3
/gnu/store/iw6gqaghlzxljycy6w7hx9wa92j3h98a-python-asdf-zarr-0.0.4
/gnu/store/7c69zgl4n0fwm8vc69adriwwv3dc1nj9-python-asdf-compression-0.0.1-1.7cfd07c
/gnu/store/i9azwlnmkvvhb9294y89vwssbqz4fj11-python-coolest-0.1.9
/gnu/store/iwms52gmpihhz4bf2z46vi2rh1pqxx49-python-naima-0.10.0
/gnu/store/6vync0piida3avsiv3bsgkdsk36yx8q8-python-zodipy-1.1.0
/gnu/store/nnn8jzsa3sm5m5j91wfzkgbsningv8i7-scamp-2.13.1
/gnu/store/haxzq4ygjiaz3r7dbjwax2nsz7a1a1x2-python-sunkit-image-0.6.1
/gnu/store/6p26zccwnd0ij00j2y8a1xhwh6bq0pn1-python-kanon-0.6.6
/gnu/store/0qc07223x49pcgmz8zi1cj2wsjcjprmx-python-pint-pulsar-1.1.1
/gnu/store/wk3vijrbccb4y05m4g09alya0x778zrx-python-mapsims-2.6.0
/gnu/store/wxj2rris8hmlzpv181fggqw3qgxqikkl-python-astroplan-0.10.1
/gnu/store/0z8xvb5nps1scj0mlr2zi2hc5g2j6xjm-python-cesium-0.12.1
/gnu/store/nq8k8hkg6mzc4r9z3xwh3vpkiczmwxmy-python-spisea-2.1.13
/gnu/store/wrxpw860xlmbh7bdksr4qv50zyamw17k-python-sndata-1.3.0
/gnu/store/zyr6p1m3nc2r3d2k8kbzj0klybvy388p-ginga-qt5-5.2.0
/gnu/store/afkm44hkyrbmw1nxmd60bgs3dp0c0w58-python-halotools-0.9.3
/gnu/store/n9dw8ndadmp4dxdbkg2rz2j29lg7znxk-python-statmorph-0.6.1
/gnu/store/3gdx4bjn7vyhx3zmpyvzbfbwg4wfdw5b-python-poliastro-0.17.0
/gnu/store/s4nf1fhkv4pkyww2mlrf7a8ypdhyil89-python-holodeck-1.5.2
/gnu/store/r3yk43d8chvxjdygy8f9m2j5ih3pv0mz-python-regularizepsf-1.0.2
/gnu/store/v42vig10chxnw3d8b3bmygcj53bdq905-python-astroalign-2.6.1
/gnu/store/58zdr1rpanxdlzhn4b5il157pd3lcl1c-python-astrocut-0.12.0
/gnu/store/1k2xhc94q0bn6gqmw4k4x0n8rbnyhsra-python-sbpy-0.5.0
/gnu/store/4lhqzc4m9kzf3rqnaf8zv88fqxv844nx-python-webbpsf-1.5.0
/gnu/store/d0y9fhnk8k1f6yib28wd24rcmp0w4kd0-python-acstools-3.7.2
/gnu/store/x0gpnac3zqag1z9kf4rw5a0n3i8nxfw7-python-glue-qt-0.3.3
/gnu/store/1s32prllb9cg8prklbx6bxj7ynnx3ad2-python-pyxsim-4.4.2
/gnu/store/h4ik6v1y1z03axxp7j9g76xbdbbg79w2-python-yt-astro-analysis-1.1.3
/gnu/store/zsdn56l677l5qnvcv7qjdam0b5i7bsyi-python-glue-astronomy-0.10.0
/gnu/store/7vjmm7yh4g6q1agw2l6p7k8imrw55ba7-python-jwst-reffiles-1.0.1
/gnu/store/fk3fp5qziw5fklbn6ifzgyy17cxh6n0x-python-sunkit-magex-1.0.0
/gnu/store/ppzswph4rj0i1y7pfihvc78yw7a9iz8j-python-fitsblender-0.4.4
/gnu/store/2vwgb6f8kb7k79navjyjznvfahmk8iz3-python-stsci-skypac-1.0.10
/gnu/store/6dsrk74c6x8azqvp6zl65298w3am8b2r-python-radiospectra-0.6.1
--8<---------------cut here---------------end--------------->8---
Sharlatan Hellseher (34):
gnu: cfitsio: Update to 4.6.0.
gnu: ccfits: Update to 2.7.
gnu: calcmysky: Update to 0.3.4.
gnu: casacore: Update to 3.7.1.
gnu: imppg: Update to 2.0.0.
gnu: python-skyfield: Update to 1.52.
gnu: python-astropy-iers-data: Update to 0.2025.3.17.0.34.53.
gnu: python-astroquery: Adjust inputs.
gnu: python-crds: Update to 12.1.4.
gnu: python-crds: Enable some tests.
gnu: python-glue-qt: Update to 0.3.3.
gnu: python-glue-qt: Enable tests.
gnu: python-mpl-animators: Update to 1.2.1.
gnu: python-ducc0: Update to 0.37.1.
gnu: python-pixell: Update to 0.28.4.
gnu: python-pysat: Update to 3.2.2.
gnu: python-radiospectra: Update to 0.6.1.
gnu: python-specreduce: Update to 1.5.1.
gnu: python-stpipe: Update to 0.8.1.
gnu: python-sunkit-image: Update to 0.6.1.
gnu: python-sunpy-soar: Update to 1.11.1.
gnu: python-viresclient: Update to 0.12.3.
gnu: Add python-stsci-tools.
gnu: Add python-fitsblender.
gnu: Add python-simplify-polyline.
gnu: Add python-stwcs.
gnu: Add python-stsci-skypac.
gnu: Add python-algopy.
gnu: Add python-numdifftools.
gnu: Add tempo.
gnu: Add python-pint-pulsar.
gnu: Add tempo2.
gnu: Add python-streamtracer.
gnu: Add python-sunkit-magex.
gnu/packages/astronomy.scm | 608 ++++++++++++++++++++++++++++----
gnu/packages/maths.scm | 17 +-
gnu/packages/python-science.scm | 77 ++++
gnu/packages/python-xyz.scm | 87 +++++
4 files changed, 708 insertions(+), 81 deletions(-)
base-commit: 79886293a8f075b85c4de515d64b95ebb372c55c
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:30:03 GMT) Full text and rfc822 format available.Message #8 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 01/34] gnu: cfitsio: Update to 4.6.0. Date: Sat, 22 Mar 2025 20:28:34 +0000
* gnu/packages/astronomy.scm (cfitsio): Update to 4.6.0.
Change-Id: Icb15f56dd0eeb654d76e5067d86b87251999c6ef
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9189cf2edb..ceeae2ead1 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -603,7 +603,7 @@ (define-public celestia-gtk
(define-public cfitsio
(package
(name "cfitsio")
- (version "4.5.0")
+ (version "4.6.0")
(source
(origin
(method url-fetch)
@@ -611,7 +611,7 @@ (define-public cfitsio
"https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/"
"cfitsio-" version ".tar.gz"))
(sha256
- (base32 "02ff4xsc4r6vam4m4nmp426bpl7klbx6nn5ajgj6452w6v1lz1g4"))))
+ (base32 "1rykn2bnr9dfc1x2g4170s2yvl7xy6vy0ji92by31xbc9vdjydvw"))))
(build-system gnu-build-system)
(arguments
(list
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:30:04 GMT) Full text and rfc822 format available.Message #11 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 02/34] gnu: ccfits: Update to 2.7. Date: Sat, 22 Mar 2025 20:28:35 +0000
* gnu/packages/astronomy.scm (ccfits): Update to 2.7.
[arguments] <configure-flags>: Build shared library and tests.
[inputs]: Add zlib.
[description]: Adjust fill column indentation.
Change-Id: If573eeb889f0c2feed92843978d6cabda22e627b
---
gnu/packages/astronomy.scm | 19 ++++++++++++-------
1 file changed, 12 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ceeae2ead1..3081d5d33b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -499,24 +499,29 @@ (define-public casacore
(define-public ccfits
(package
(name "ccfits")
- (version "2.6")
+ (version "2.7")
(source
(origin
(method url-fetch)
(uri (string-append
- "https://heasarc.gsfc.nasa.gov/docs/software/fitsio/ccfits/"
+ "https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/ccfits/"
"CCfits-" version ".tar.gz"))
(sha256
- (base32 "04l6na8vr5xadz3rbx62as79x1ch4994vbb625kx0dz5czdkkd1b"))))
+ (base32 "06mhvvdsaqvk3cc309gv6zd4lcxm5q5aialaq0n77gzczv94cdgn"))))
(build-system cmake-build-system)
- (inputs (list cfitsio))
+ (arguments
+ (list
+ #:configure-flags
+ #~(list "-DBUILD_SHARED_LIBS=ON"
+ "-DTESTS=ON")))
+ (inputs (list cfitsio zlib))
(home-page "https://heasarc.gsfc.nasa.gov/docs/software/fitsio/ccfits/")
(synopsis "C++ interface to the CFITSIO")
(description
"CCfits is an object oriented interface to the cfitsio library. It is
-designed to make the capabilities of cfitsio available to programmers working in
-C++. It is written in ANSI C++ and implemented using the C++ Standard Library
-with namespaces, exception handling, and member template functions.")
+designed to make the capabilities of cfitsio available to programmers working
+in C++. It is written in ANSI C++ and implemented using the C++ Standard
+Library with namespaces, exception handling, and member template functions.")
(license (license:non-copyleft "file://License.txt"
"See License.txt in the distribution."))))
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:30:05 GMT) Full text and rfc822 format available.Message #14 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 03/34] gnu: calcmysky: Update to 0.3.4. Date: Sat, 22 Mar 2025 20:28:36 +0000
* gnu/packages/astronomy.scm (calcmysky): Update to 0.3.4.
Change-Id: I112f5204c56846d7df07d4d8c56f6ffd83d50826
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 3081d5d33b..4bffd68fb4 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -344,7 +344,7 @@ (define-public calceph
(define-public calcmysky
(package
(name "calcmysky")
- (version "0.3.3")
+ (version "0.3.4")
(source
(origin
(method git-fetch)
@@ -353,7 +353,7 @@ (define-public calcmysky
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0njsapy3qlyg3y0p5a849xydzhnzk4p5s0s37zxw9k5nnaf4vinp"))))
+ (base32 "0blp1w1bghskfi0ysds51r2a7nvvjc9yqp5nlf8l3gciig97nhdg"))))
(build-system cmake-build-system)
(arguments
(list #:configure-flags
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:30:06 GMT) Full text and rfc822 format available.Message #17 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 04/34] gnu: casacore: Update to 3.7.1. Date: Sat, 22 Mar 2025 20:28:37 +0000
* gnu/packages/astronomy.scm (casacore): Update to 3.7.1.
Change-Id: I87b274e3517812a6bce0777e720c2cad75b95408
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 4bffd68fb4..2e72cf9238 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -401,7 +401,7 @@ (define-public calcmysky-qt5
(define-public casacore
(package
(name "casacore")
- (version "3.6.1")
+ (version "3.7.1")
(source
(origin
(method git-fetch)
@@ -410,7 +410,7 @@ (define-public casacore
(commit (string-append "v" version))))
(sha256
(base32
- "0ja0ss1cjfx9j2pnmqzr51ipxrfij7i2c4bq4nqkgaxfk5q447i5"))
+ "14imw15cbxgnn75hp7aq4fymljg8m1gidihxn93ni9sacd416f7b"))
(file-name (git-file-name name version))))
(build-system cmake-build-system)
(arguments
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:30:07 GMT) Full text and rfc822 format available.Message #20 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 05/34] gnu: imppg: Update to 2.0.0. Date: Sat, 22 Mar 2025 20:28:38 +0000
* gnu/packages/astronomy.scm (imppg): Update to 2.0.0.
[arguments] <tests?>: Disable, reported upstream.
Change-Id: Ibdbd81d89011e13a9c03226e63b51dbaa5b19d68
---
gnu/packages/astronomy.scm | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 2e72cf9238..a74f6c3947 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -969,7 +969,7 @@ (define-public healpix-cxx
(define-public imppg
(package
(name "imppg")
- (version "1.9.2-beta")
+ (version "2.0.0")
(source
(origin
(method git-fetch)
@@ -978,12 +978,15 @@ (define-public imppg
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "13kqvl9ay4x0ia7iikxbhg96pp46f1awr382p05gxdvsxksq900v"))))
+ (base32 "0cq7syrcclf1ykaxpjv73a30g4m8fbnqdphfs13932i0a7vgkaid"))))
(build-system cmake-build-system)
(arguments
(list
- ;; See <https://github.com/GreatAttractor/imppg/issues/28>.
- #:tests? (target-x86-64?)))
+ ;; Tests fail on i686 see:
+ ;; <https://github.com/GreatAttractor/imppg/issues/28>;
+ ;; Tests hang on any architectures see:
+ ;; <https://github.com/GreatAttractor/imppg/issues/34>.
+ #:tests? #f))
(native-inputs
(list boost pkg-config))
(inputs
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:30:08 GMT) Full text and rfc822 format available.Message #23 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 06/34] gnu: python-skyfield: Update to 1.52. Date: Sat, 22 Mar 2025 20:28:39 +0000
* gnu/packages/astronomy.scm (python-skyfield): Update to 1.52.
Change-Id: I0dbae6c4f7ffad9c177d0e51a5483b361e5ad3db
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a74f6c3947..2876788f47 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6915,7 +6915,7 @@ (define-public python-roman-datamodels
(define-public python-skyfield
(package
(name "python-skyfield")
- (version "1.49")
+ (version "1.52")
(source
(origin
(method git-fetch) ; PyPI tarball lacks test data
@@ -6924,7 +6924,7 @@ (define-public python-skyfield
(commit version)))
(file-name (git-file-name name version))
(sha256
- (base32 "1rk71lzy8w28f2kzhxb3pyndncrj91jay43nvqlrlzjxi2rbg7ix"))))
+ (base32 "08gg94fb4h5gjsywzy539h9znyghbi0rqnfsnajhwf5vq8wwhbzq"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:30:09 GMT) Full text and rfc822 format available.Message #26 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 07/34] gnu: python-astropy-iers-data: Update to 0.2025.3.17.0.34.53. Date: Sat, 22 Mar 2025 20:28:40 +0000
* gnu/packages/astronomy.scm (python-astropy-iers-data): Update to 0.2025.3.17.0.34.53.
Change-Id: I1924e0d7d52f29a083ac8bbf3e39e9d014eb92a5
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 2876788f47..2eda5a9a65 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4189,13 +4189,13 @@ (define-public python-astropy-healpix
(define-public python-astropy-iers-data
(package
(name "python-astropy-iers-data")
- (version "0.2025.2.17.0.34.13")
+ (version "0.2025.3.17.0.34.53")
(source
(origin
(method url-fetch)
(uri (pypi-uri "astropy_iers_data" version))
(sha256
- (base32 "0q390s0by2szq82lligwgpbmvmdwi0jyxp0sh51kzrijg928bdil"))))
+ (base32 "0a7a548za7rppsggcnj8njjqq4ajlhrx27qql32jlxzl986havv4"))))
(build-system pyproject-build-system)
(arguments
(list #:tests? #f)) ; no tests
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:30:11 GMT) Full text and rfc822 format available.Message #29 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 09/34] gnu: python-crds: Update to 12.1.4. Date: Sat, 22 Mar 2025 20:28:42 +0000
* gnu/packages/astronomy.scm (python-crds): Update to 12.1.4.
[propagated-inputs]: Add python-beautifulsoup4.
Change-Id: Ieb6a690115beae8231378bbbf201f1fa27cfcf0c
---
gnu/packages/astronomy.scm | 17 +++++++++--------
1 file changed, 9 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index e308dcb02c..816a2a7c32 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2568,13 +2568,13 @@ (define-public python-cosmopy
(define-public python-crds
(package
(name "python-crds")
- (version "12.0.9")
+ (version "12.1.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "crds" version))
(sha256
- (base32 "0cf6pr6lixqhmvig9ajhh68yd1ri7dninamakvs728mjd5nswmw3"))))
+ (base32 "1h4il1gpk3219lskd17vfa5wpbpj2mhacv2yv9v4v33kwzfjb5w7"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -2582,21 +2582,22 @@ (define-public python-crds
;; additional test data. See:
;; https://github.com/spacetelescope/crds/blob/master/setup_test_cache
#:tests? #f))
+ (native-inputs
+ (list python-setuptools
+ python-setuptools-scm
+ python-wheel))
(propagated-inputs
(list python-asdf
python-astropy
+ python-beautifulsoup4
python-boto3
python-filelock
python-numpy
python-parsley
python-pysynphot
+ python-requests
python-roman-datamodels
- python-stsynphot
- python-requests))
- (native-inputs
- (list python-setuptools
- python-setuptools-scm
- python-wheel))
+ python-stsynphot))
(home-page "https://hst-crds.stsci.edu")
(synopsis "Calibration Reference Data System for HST and JWST")
(description
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:30:11 GMT) Full text and rfc822 format available.Message #32 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 08/34] gnu: python-astroquery: Adjust inputs. Date: Sat, 22 Mar 2025 20:28:41 +0000
* gnu/packages/astronomy.scm (python-astroquery): [propagated-inputs]:
Add python-astropy-healpix, python-boto3, and python-regions.
[native-inputs]: Remove python-astropy-healpix and python-regions; add
python-pytest-doctestplus.
[description]: Start from a new line.
Change-Id: I73a68ce54b413f6a8ada628f5a75c8732206ec68
---
gnu/packages/astronomy.scm | 13 ++++++++-----
1 file changed, 8 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 2eda5a9a65..e308dcb02c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4335,26 +4335,29 @@ (define-public python-astroquery
(apply invoke "pytest" "-v" test-flags))))))))
(native-inputs
(list nss-certs-for-test
- python-astropy-healpix
python-matplotlib
- ;; python-mocpy : Not packed yet, optional
python-pytest-astropy
python-pytest-dependency
- python-regions
+ python-pytest-doctestplus
python-setuptools
python-wheel))
(propagated-inputs
(list python-astropy
+ python-astropy-healpix
python-beautifulsoup4
+ python-boto3
python-html5lib
python-keyring
+ ;; python-mocpy : Not packed yet, optional and Rust is required
python-numpy
python-pyvo
+ python-regions
python-requests))
(home-page "https://astroquery.readthedocs.io/en/latest/index.html")
(synopsis "Access online astronomical data resources")
- (description "Astroquery is a package that contains a collection of tools
-to access online Astronomical data. Each web service has its own sub-package.")
+ (description
+ "Astroquery is a package that contains a collection of tools to access
+online Astronomical data. Each web service has its own sub-package.")
(license license:bsd-3)))
(define-public python-astroscrappy
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:31:01 GMT) Full text and rfc822 format available.Message #35 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 10/34] gnu: python-crds: Enable some tests. Date: Sat, 22 Mar 2025 20:28:43 +0000
* gnu/packages/astronomy.scm (python-crds) [arguments] <tests?>: Enable
them.
<test-flags>: Ignore tests files which tests require network access,
additional test data or just fail the most.
[native-inputs]: Add python-mock, python-pytest, python-pytest-astropy,
python-pytest-doctestplus, and python-stsynphot.
Change-Id: Ic4634c8354c5094c45091b7e08e5bcea944fe47b
---
gnu/packages/astronomy.scm | 41 +++++++++++++++++++++++++++++++++-----
1 file changed, 36 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 816a2a7c32..920376e038 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2578,13 +2578,44 @@ (define-public python-crds
(build-system pyproject-build-system)
(arguments
(list
- ;; XXX: Tests require Internet access to https://hst-crds.stsci.edu and
- ;; additional test data. See:
- ;; https://github.com/spacetelescope/crds/blob/master/setup_test_cache
- #:tests? #f))
+ #:test-flags
+ ;; XXX: Tests require a complex set up and test data, try to run some
+ ;; minimal portion of unit tests to persist package comparability during
+ ;; updates.
+ #~(map
+ (lambda (ignore) (format #f "--ignore=~a" ignore))
+ ;; Introduce cycle: python-crds -> python-stdatamodels -> python-crds
+ (list "test/bestrefs/test_bestrefs.py"
+ ;; Network is required to access <https://hst-crds.stsci.edu>.
+ "test/bestrefs/"
+ "test/submit/"
+ ;; XXX: Excluding test files which tests fail the most, maybe
+ ;; find a way how to enable/fix them.
+ "test/certify/test_certify.py"
+ "test/core/test_cmdline.py"
+ "test/core/test_heavy_client.py"
+ "test/core/test_reftypes.py"
+ "test/core/test_rmap.py"
+ "test/core/test_substitutions.py"
+ "test/misc/test_check_archive.py"
+ "test/misc/test_synphot.py"
+ "test/refactoring/test_refactor.py"
+ "test/roman/test_roman.py"
+ "test/test_bad_files.py"
+ "test/test_build6.py"
+ "test/test_diff.py"
+ "test/test_list.py"
+ "test/test_matches.py"
+ "test/test_rowdiff.py"
+ "test/test_sync.py"))))
(native-inputs
- (list python-setuptools
+ (list python-mock
+ python-pytest
+ python-pytest-astropy
+ python-pytest-doctestplus
+ python-setuptools
python-setuptools-scm
+ python-stsynphot
python-wheel))
(propagated-inputs
(list python-asdf
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:31:02 GMT) Full text and rfc822 format available.Message #38 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 14/34] gnu: python-ducc0: Update to 0.37.1. Date: Sat, 22 Mar 2025 20:28:47 +0000
* gnu/packages/maths.scm (python-ducc0): Update to 0.37.1.
[arguments] <test-flags>: Run tests in parallel, supported by upstream.
[native-inputs]: Remove python-wheel; add cmake-minimal,
python-nanobind, python-pytest-xdist, and python-scikit-build-core.
Change-Id: Iedc5f5ce49c50f8b72a120f592982baad06be89f
---
gnu/packages/maths.scm | 17 +++++++++++------
1 file changed, 11 insertions(+), 6 deletions(-)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 8baf3a0a7f..c9c04d2abf 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -4129,7 +4129,7 @@ (define-public python-cvxopt
(define-public python-ducc0
(package
(name "python-ducc0")
- (version "0.36.0")
+ (version "0.37.1")
(source
(origin
(method git-fetch)
@@ -4139,21 +4139,26 @@ (define-public python-ducc0
"ducc0_" (string-replace-substring version "." "_")))))
(file-name (git-file-name name version))
(sha256
- (base32 "1pfj7k5s3d237r7diqrd7cgvf8p5zms6pp64nfdildx49kwggwab"))))
+ (base32 "0pckbip2ffmiwm73wrpvif3gy0a09v9b9kbyallp520l6l69n4k8"))))
(build-system pyproject-build-system)
(arguments
(list
- #:test-flags #~(list "python/test")
+ #:test-flags
+ #~(list "--numprocesses" (number->string (parallel-job-count))
+ "python/test")
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'set-env
(lambda _
(setenv "DUCC0_OPTIMIZATION" "portable-strip"))))))
(native-inputs
- (list pybind11
+ (list cmake-minimal
+ pybind11
+ python-nanobind
python-pytest
- python-setuptools
- python-wheel))
+ python-pytest-xdist
+ python-scikit-build-core
+ python-setuptools))
(propagated-inputs
(list python-numpy))
(home-page "https://gitlab.mpcdf.mpg.de/mtr/ducc")
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:31:02 GMT) Full text and rfc822 format available.Message #41 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 15/34] gnu: python-pixell: Update to 0.28.4. Date: Sat, 22 Mar 2025 20:28:48 +0000
* gnu/packages/astronomy.scm (python-pixell): Update to 0.28.4.
Change-Id: I3949b5dd80e0bdef495b6e4e73a4b6f848dfba57
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 91a5d84d34..2ba6e0bbdc 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3561,13 +3561,13 @@ (define-public python-mapsims
(define-public python-pixell
(package
(name "python-pixell")
- (version "0.28.0")
+ (version "0.28.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pixell" version))
(sha256
- (base32 "11xd0ld329vr3spg5nzszn0bxzahnvkrh2akkd7qff33ndf75hkk"))))
+ (base32 "1li6gcplqi1az9hf6kl1gsykdrrf62wra91n17r97s041hj70n3a"))))
(build-system pyproject-build-system)
(native-inputs
(list gfortran
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:31:03 GMT) Full text and rfc822 format available.Message #44 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 16/34] gnu: python-pysat: Update to 3.2.2. Date: Sat, 22 Mar 2025 20:28:49 +0000
* gnu/packages/astronomy.scm (python-pysat): Update to 3.2.2.
Change-Id: Ib7969526925c629bb505e0f1bd6ecdc53fdc56d8
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 2ba6e0bbdc..0ab980b9b0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6224,7 +6224,7 @@ (define-public python-pyregion
(define-public python-pysat
(package
(name "python-pysat")
- (version "3.2.1")
+ (version "3.2.2")
(source
(origin
(method git-fetch) ; no tests data in the PyPI tarball
@@ -6233,7 +6233,7 @@ (define-public python-pysat
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "0xsxj66ybh7q3n68nlasz23x8lsdamny92r960gipzk8xmwwzmcw"))))
+ (base32 "0gm71zafigwc94s37wqyl86yjabpq6wx9izwxag74wg1ynhqyvf0"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:31:03 GMT) Full text and rfc822 format available.Message #47 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 17/34] gnu: python-radiospectra: Update to 0.6.1. Date: Sat, 22 Mar 2025 20:28:50 +0000
* gnu/packages/astronomy.scm (python-radiospectra): Update to 0.6.1.
[arguments] <test-flags>: Run tests in parallel, supported in upstream.
[native-inputs]: Add python-pytest, python-pytest-doctestplus,
python-pytest-xdist, python-setuptools, and python-wheel.
Change-Id: I5bb6e46a2b92f246aae0fb5bab70834087cec08f
---
gnu/packages/astronomy.scm | 19 +++++++++++++------
1 file changed, 13 insertions(+), 6 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 0ab980b9b0..d03f0ea346 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6860,16 +6860,18 @@ (define-public python-radio-beam
(define-public python-radiospectra
(package
(name "python-radiospectra")
- (version "0.6.0")
+ (version "0.6.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "radiospectra" version))
(sha256
- (base32 "1mqdh90hpq7sc9lybmc7y33g84vswf7w0r5hs57rf3a9hzfxad90"))))
+ (base32 "14p4hp9yncyjsrbys0yjq7jbj0n9wf0x5sy67kilqrw14d1xvzch"))))
(build-system pyproject-build-system)
(arguments
(list
+ #:test-flags
+ #~(list "--numprocesses" (number->string (parallel-job-count)))
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'set-home-env
@@ -6877,16 +6879,21 @@ (define-public python-radiospectra
;; Tests require HOME to be set.
;; Permission denied: '/homeless-shelter'
(setenv "HOME" "/tmp"))))))
+ (native-inputs
+ (list python-pytest
+ python-pytest-astropy
+ python-pytest-doctestplus
+ python-pytest-xdist
+ python-setuptools
+ python-setuptools-scm
+ python-sunpy-soar
+ python-wheel))
(propagated-inputs
(list python-cdflib
python-matplotlib
python-numpy
python-scipy
python-sunpy))
- (native-inputs
- (list python-pytest-astropy
- python-setuptools-scm
- python-sunpy-soar))
(home-page "https://docs.sunpy.org/projects/radiospectra")
(synopsis "Support for radio spectra on solar physics")
(description
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:31:04 GMT) Full text and rfc822 format available.Message #50 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 18/34] gnu: python-specreduce: Update to 1.5.1. Date: Sat, 22 Mar 2025 20:28:51 +0000
* gnu/packages/astronomy.scm (python-specreduce): Update to 1.5.1.
Change-Id: Ib8ed6da65e477381685eae95a05e2650cca22ddb
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index d03f0ea346..2f1d7268f0 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4085,13 +4085,13 @@ (define-public python-soxs
(define-public python-specreduce
(package
(name "python-specreduce")
- (version "1.4.1")
+ (version "1.5.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "specreduce" version))
(sha256
- (base32 "14ba4ws2z3kpw007f3hpslgp5i6dx082xhql4aim7j82211gpj6s"))))
+ (base32 "0lx2v6wp5lrn9n7b6i15ib3a2rwndjhrm70h2r9mmx7vx44d9sd2"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:31:04 GMT) Full text and rfc822 format available.Message #53 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 19/34] gnu: python-stpipe: Update to 0.8.1. Date: Sat, 22 Mar 2025 20:28:52 +0000
* gnu/packages/astronomy.scm (python-stpipe): Update to 0.8.1.
[propagated-inputs]: Add python-importlib-metadata and python-pyyaml.
[native-inputs]: Remove python-pytest-openfiles.
Change-Id: Idc8ea72b5bf19e435489eef055cec31a93e40494
---
gnu/packages/astronomy.scm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 2f1d7268f0..790a5f2f9e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5951,13 +5951,13 @@ (define-public python-stdatamodels
(define-public python-stpipe
(package
(name "python-stpipe")
- (version "0.8.0")
+ (version "0.8.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "stpipe" version))
(sha256
- (base32 "1883gbn9dy3f53423rka55r828ml38dsqdamn2bgf2w5xf6cp7dg"))
+ (base32 "1bvdcyhqnk10ks60hcdh8javgva23y9rxqsk69frdij39ainb872"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -5971,14 +5971,15 @@ (define-public python-stpipe
(native-inputs
(list python-pytest
python-pytest-doctestplus
- python-pytest-openfiles
- python-setuptools-scm
python-setuptools
+ python-setuptools-scm
python-wheel))
(propagated-inputs
(list python-asdf
python-astropy
python-crds
+ python-importlib-metadata
+ python-pyyaml
python-stdatamodels))
(home-page "https://github.com/spacetelescope/stpipe")
(synopsis "Framework for calibration pipeline software")
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:31:05 GMT) Full text and rfc822 format available.Message #56 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 20/34] gnu: python-sunkit-image: Update to 0.6.1. Date: Sat, 22 Mar 2025 20:28:53 +0000
* gnu/packages/astronomy.scm (python-sunkit-image): Update to 0.6.1.
[native-inputs]: Remove python-pytest.
Change-Id: Id83c6f125beb738ad4377030152b65efed4475ff
---
gnu/packages/astronomy.scm | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 790a5f2f9e..a2140837c6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4133,13 +4133,13 @@ (define-public python-specreduce
(define-public python-sunkit-image
(package
(name "python-sunkit-image")
- (version "0.6.0")
+ (version "0.6.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sunkit_image" version))
(sha256
- (base32 "0gdbg3g8jxcgkwd34ls6342zj90m6ncas4f655q9dh79lqy7hhm8"))))
+ (base32 "0x8w87vwdr78vcq0zha2y7xyfy16amc5aym4v8127xvphq1ff4v3"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -4157,7 +4157,6 @@ (define-public python-sunkit-image
(setenv "HOME" "/tmp"))))))
(native-inputs
(list python-dask
- python-pytest
python-pytest-astropy
python-pytest-mpl
python-pytest-xdist
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:31:06 GMT) Full text and rfc822 format available.Message #59 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 21/34] gnu: python-sunpy-soar: Update to 1.11.1. Date: Sat, 22 Mar 2025 20:28:54 +0000
* gnu/packages/astronomy.scm (python-sunpy-soar): Update to 1.11.1.
[native-inputs]: Add python-setuptools-scm-next.
Change-Id: Idee2b50c22a42fa1241cd58f47e5b31bdc508b53
---
gnu/packages/astronomy.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a2140837c6..2a89d2201a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -5381,13 +5381,13 @@ (define-public python-sunpy
(define-public python-sunpy-soar
(package
(name "python-sunpy-soar")
- (version "1.11.0")
+ (version "1.11.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sunpy_soar" version))
(sha256
- (base32 "015pc6m7bdmgyw2inmjv84fgsjj8x90f91gphyv9ql4xn6yspnc2"))))
+ (base32 "04zdfxb0y7m94lna6bikdc4rwa8n11wh42jyha0fxc604xhy2b3l"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -5429,6 +5429,7 @@ (define-public python-sunpy-soar
python-pytest-doctestplus
python-responses
python-setuptools
+ python-setuptools-scm-next
python-wheel))
(propagated-inputs
(list python-astropy
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:31:06 GMT) Full text and rfc822 format available.Message #62 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 22/34] gnu: python-viresclient: Update to 0.12.3. Date: Sat, 22 Mar 2025 20:28:55 +0000
* gnu/packages/astronomy.scm (python-viresclient): Update to 0.12.3.
Change-Id: Ic173ed41c9012561d13d925e13cbbfbf78fd0009
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 2a89d2201a..ef4b2b9d39 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -7042,13 +7042,13 @@ (define-public python-tweakwcs
(define-public python-viresclient
(package
(name "python-viresclient")
- (version "0.12.2")
+ (version "0.12.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "viresclient" version))
(sha256
- (base32 "1x1xgs6fs7rmhqs6f32x173gsz1mlrcpji0rf307x232lyav7wds"))))
+ (base32 "1vx1pk8sglr0xd8z4hg675s105m26x3k75mpc4bsdxryfjvmawh4"))))
(build-system pyproject-build-system)
(native-inputs
(list python-flit-core
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:31:07 GMT) Full text and rfc822 format available.Message #65 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 23/34] gnu: Add python-stsci-tools. Date: Sat, 22 Mar 2025 20:28:56 +0000
* gnu/packages/astronomy.scm (python-stsci-tools): New variable.
Change-Id: Ice4b98040b62e22a656c0992ed86921173834966
---
gnu/packages/astronomy.scm | 42 ++++++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ef4b2b9d39..1d50c8d04a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6995,6 +6995,48 @@ (define-public python-skyfield
orbit around the Earth.")
(license license:expat)))
+(define-public python-stsci-tools
+ (package
+ (name "python-stsci-tools")
+ (version "4.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "stsci_tools" version))
+ (sha256
+ (base32 "180x3fmp020p4imc39ajs5qs6iimd8ld5bly3g9mm4psqbp8nyw9"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "-k"
+ ;; Two tests fail with error: RuntimeError: Problem during:
+ ;; takes_time(), exitcode: 1. Check log.
+ (string-append "not test_launch_and_wait[None-spawn]"
+ " and not test_launch_and_wait[None-forkserver]"))
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'pre-check
+ (lambda _
+ (delete-file "conftest.py"))))))
+ (native-inputs
+ (list python-pytest
+ python-pytest-astropy-header
+ python-pytest-doctestplus
+ python-setuptools
+ python-setuptools-scm-next
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-numpy
+ python-packaging))
+ (home-page "https://stscitools.readthedocs.io/en/latest")
+ (synopsis "Collection of STScI utility functions")
+ (description
+ "This package provides a collection of @acronym{Space Telescope Science
+Institute, STScI} utility functions.")
+ (license license:bsd-3)))
+
(define-public python-tweakwcs
(package
(name "python-tweakwcs")
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:32:01 GMT) Full text and rfc822 format available.Message #68 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 27/34] gnu: Add python-stsci-skypac. Date: Sat, 22 Mar 2025 20:29:00 +0000
* gnu/packages/astronomy.scm (python-stsci-skypac): New variable.
Change-Id: Ia4a87dbc7a3d5323907a2dea98df696582965532
---
gnu/packages/astronomy.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 3143867010..df3131646b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -7026,6 +7026,36 @@ (define-public python-skyfield
orbit around the Earth.")
(license license:expat)))
+(define-public python-stsci-skypac
+ (package
+ (name "python-stsci-skypac")
+ (version "1.0.10")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "stsci_skypac" version))
+ (sha256
+ (base32 "0amfknfxzrmia0d8x83i9h2v5760ynvfgfs0kzpb1ib0vyaci671"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:tests? #f)) ; no tests in PyPI or git
+ (native-inputs
+ (list python-setuptools
+ python-setuptools-scm-next
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-numpy
+ python-spherical-geometry
+ python-stsci-imagestats
+ python-stsci-tools
+ python-stwcs))
+ (home-page "https://stsci-skypac.readthedocs.io/en/latest")
+ (synopsis "Sky matching on image mosaic")
+ (description
+ "This package implements a functionality to match sky on image mosaic.")
+ (license license:bsd-3)))
+
(define-public python-stsci-tools
(package
(name "python-stsci-tools")
--
2.48.1
lars <at> 6xq.net, me <at> bonfacemunyoki.com, sharlatanus <at> gmail.com, tanguy <at> bioneland.org, jgart <at> dismail.de, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:32:02 GMT) Full text and rfc822 format available.Message #71 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 28/34] gnu: Add python-algopy. Date: Sat, 22 Mar 2025 20:29:01 +0000
* gnu/packages/python-science.scm (python-algopy): New variable.
Change-Id: I6630f4677e0bd33f321cce9e6d1f40a6bf36c625
---
gnu/packages/python-science.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 58abc3acee..bc78afc256 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -174,6 +174,39 @@ (define-public pyre
maintainability.")
(license license:bsd-3)))
+(define-public python-algopy
+ (package
+ (name "python-algopy")
+ (version "0.6.0") ; the higher versions requir NumPy 2+ stack
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "algopy" version))
+ (sha256
+ (base32 "1vjrzzxa3gvyh2zvm1vwg0s6a7dv23rihgdvgyj1vqniyymp91nq"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-wheel))
+ (propagated-inputs
+ (list python-numpy
+ python-scipy))
+ (home-page "https://pythonhosted.org/algopy")
+ (synopsis "Algorithmic Differentation in Python")
+ (description
+ "AlgoPy provides a functionality to differentiate functions implemented
+as computer programs by using Algorithmic Differentiation (AD) techniques in
+the forward and reverse mode.
+
+The forward mode propagates univariate Taylor polynomials of arbitrary order.
+Hence it is also possible to use AlgoPy to evaluate higher-order derivative
+tensors. The reverse mode is also known as backpropagation and can be found
+in similar form in tools like PyTorch. Speciality of AlgoPy is the
+possibility to differentiate functions that contain matrix functions as
++,-,*,/, dot, solve, qr, eigh, cholesky.")
+ (license license:bsd-3)))
+
(define-public python-cmocean
(package
(name "python-cmocean")
--
2.48.1
lars <at> 6xq.net, me <at> bonfacemunyoki.com, sharlatanus <at> gmail.com, tanguy <at> bioneland.org, jgart <at> dismail.de, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:32:02 GMT) Full text and rfc822 format available.Message #74 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 29/34] gnu: Add python-numdifftools. Date: Sat, 22 Mar 2025 20:29:02 +0000
* gnu/packages/python-science.scm (python-numdifftools): New variable.
Change-Id: I0b5899e0bff10b488df5377c274eca63b26f9751
---
gnu/packages/python-science.scm | 44 +++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index bc78afc256..fd250dae40 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -359,6 +359,50 @@ (define-public python-imagehash
@end itemize")
(license license:bsd-2)))
+(define-public python-numdifftools
+ (package
+ (name "python-numdifftools")
+ (version "0.9.41")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "numdifftools" version))
+ (sha256
+ (base32 "1d49wd5jqnl0500jyws0vb7nv4dy4bb5ml4z9qx1n8867k6hbxsf"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags #~(list "--pyargs" "numdifftools")
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "setup.py"
+ ;; We can run tests without deprecated pytest-runner.
+ (("setup_requires.*") "")))))))
+ (native-inputs
+ (list python-algopy
+ python-line-profiler
+ python-pytest
+ python-setuptools
+ python-setuptools-scm
+ python-statsmodels
+ python-wheel))
+ (propagated-inputs
+ (list python-numpy
+ python-scipy))
+ (home-page "https://github.com/pbrod/numdifftools")
+ (synopsis "Solves automatic numerical differentiation problems")
+ (description
+ "This package implements a functionality to solve automatic numerical
+differentiation problems in one or more variables. Finite differences are
+used in an adaptive manner, coupled with a Richardson extrapolation
+methodology to provide a maximally accurate result. The user can configure
+many options like; changing the order of the method or the extrapolation, even
+allowing the user to specify whether complex-step, central, forward or
+backward differences are used.")
+ (license license:bsd-3)))
+
(define-public python-osqp
(package
(name "python-osqp")
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:32:03 GMT) Full text and rfc822 format available.Message #77 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 30/34] gnu: Add tempo. Date: Sat, 22 Mar 2025 20:29:03 +0000
* gnu/packages/astronomy.scm (tempo): New variable.
Change-Id: Id2342e6c8879f87c3e6283d8a7e9c657a7472373
---
gnu/packages/astronomy.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index df3131646b..de37d6b2e6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -8168,6 +8168,34 @@ (define-public swarp
any arbitrary astrometric projection defined in the WCS standard.")
(license license:gpl3+)))
+(define-public tempo
+ (package
+ (name "tempo")
+ (version "13.103")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/tempo/tempo-"
+ version ".tar.gz"))
+ (sha256
+ (base32 "1ghml56sd7rhwymrlqlvj3g12hjyqvk2sjl08rqlf5y7dwdp0nvl"))))
+ (build-system gnu-build-system)
+ (native-inputs
+ (list gfortran))
+ (home-page "https://github.com/nanograv/tempo")
+ (synopsis "Pulsar timing data analysis program")
+ (description
+ "Tempo analyzes pulsar timing data. Pulse times of arrival (TOAs),
+pulsar model parameters, and coded instructions are read from one or more
+input files. The TOAs are fitted by a pulse timing model incorporating
+transformation to the solar-system barycenter, pulsar rotation and spin-down
+and, where necessary, one of several binary models. Program output includes
+parameter values and uncertainties, residual pulse arrival times, chi-squared
+statistics, and the covariance matrix of the model. In prediction
+mode,ephemerides of pulse phase behavior (in the form of polynomial
+expansions) are calculated from input timing models.")
+ (license license:gpl2+)))
+
(define-public unsio
;; There is no versioned tag, use the latest commit.
(let ((commit "25e52468298e1194c9726ef5dba9d5fbb46870f5")
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:32:04 GMT) Full text and rfc822 format available.Message #80 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 31/34] gnu: Add python-pint-pulsar. Date: Sat, 22 Mar 2025 20:29:04 +0000
* gnu/packages/astronomy.scm (python-pint-pulsar): New variable.
Change-Id: Ib2a6bc537c641c3cddd2b05418c30b515db4aad3
---
gnu/packages/astronomy.scm | 113 +++++++++++++++++++++++++++++++++++++
1 file changed, 113 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index de37d6b2e6..c1dd9a9b1e 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -6809,6 +6809,119 @@ (define python-asdf-wcs-schemas
install an implementation package such as gwcs.")
(license license:bsd-3)))
+(define-public python-pint-pulsar
+ (package
+ (name "python-pint-pulsar")
+ (version "1.1.1")
+ (source
+ (origin
+ (method git-fetch) ; no tests data in the PyPI tarball
+ (uri (git-reference
+ (url "https://github.com/nanograv/PINT")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0i8vznjgbdhrfv6kcq33zvsn6q40r29sscy8fmk13vx2zfwl8nf0"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "-k" (string-join
+ ;; Tests failing with assertion on not correct precision
+ ;; or missing data files.
+ (list "not test_astropy_observatory"
+ "test_copy_wideband_fitter_object"
+ "test_IERS_B_builtin_agree_with_IERS_Auto_dX"
+ "test_astropy_observatory"
+ "test_time_construction_jds_exact[tdb]"
+ "test_copy_toa_object"
+ "test_copy_residuals"
+ "test_copy_fitter_object")
+ " and not ")
+ ;; XXX: The most of the tests require additional data, select
+ ;; files where they may run without it and check how to enable
+ ;; more.
+ "tests/test_Galactic.py"
+ "tests/test_all_component_and_model_builder.py"
+ "tests/test_astrometry.py"
+ "tests/test_astropy_observatory.py"
+ "tests/test_astropy_times.py"
+ "tests/test_astropy_version.py"
+ "tests/test_binary_generic.py"
+ "tests/test_binconvert.py"
+ "tests/test_compare.py"
+ "tests/test_compare_model.py"
+ "tests/test_compare_model_ecl_vs_icrs.py"
+ "tests/test_convert_parfile.py"
+ "tests/test_copy.py"
+ "tests/test_covariance_matrix.py"
+ "tests/test_datafiles.py"
+ "tests/test_derived_quantities.py"
+ "tests/test_derivedparams.py"
+ "tests/test_dmxrange_add_sub.py"
+ "tests/test_erfautils.py"
+ "tests/test_eventstats.py"
+ "tests/test_funcpar.py"
+ "tests/test_kepler.py"
+ "tests/test_leapsec.py"
+ "tests/test_model_manual.py"
+ "tests/test_numpy.py"
+ "tests/test_observatory_envar.py"
+ "tests/test_observatory_metadata.py"
+ "tests/test_parfile.py"
+ "tests/test_parunits.py"
+ "tests/test_pb.py"
+ "tests/test_phase.py"
+ "tests/test_pickle.py"
+ "tests/test_plk_widget.py"
+ "tests/test_plot_utils.py"
+ "tests/test_plrednoise.py"
+ "tests/test_pmtransform_units.py"
+ "tests/test_precision.py"
+ "tests/test_prefix_param_inheritance.py"
+ "tests/test_priors.py"
+ "tests/test_process_parfile.py"
+ "tests/test_pulsar_mjd.py"
+ "tests/test_pulsar_position.py"
+ "tests/test_reduced_precision.py"
+ "tests/test_satobs.py"
+ "tests/test_t2binary2pint.py"
+ "tests/test_tcb2tdb.py"
+ "tests/test_templates.py"
+ "tests/test_variety_parfiles.py"
+ "tests/test_version.py")))
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-versioneer
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-corner
+ python-emcee
+ python-jplephem
+ python-loguru
+ python-matplotlib
+ python-nestle
+ python-numdifftools
+ python-numpy
+ python-pyerfa
+ python-scipy
+ python-uncertainties))
+ (home-page "https://github.com/nanograv/PINT")
+ (synopsis "Software for high-precision pulsar timing")
+ (description
+ "PINT is not TEMPO3 - package providing a Pulsar Timing, written in
+Python from scratch.
+Features:
+@itemize
+@item a robust system to produce high-precision timing results that is
+completely independent of TEMPO and Tempo2
+@item a system that is easy to extend and modify due to a good design
+and the use of a modern programming language, techniques, and libraries
+@end itemize")
+ (license license:bsd-3)))
+
(define-public python-rad
(package
(name "python-rad")
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:32:04 GMT) Full text and rfc822 format available.Message #83 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 12/34] gnu: python-glue-qt: Enable tests. Date: Sat, 22 Mar 2025 20:28:45 +0000
* gnu/packages/astronomy.scm (python-glue-qt): Enable tests, upstream
has fixed them.
Change-Id: Ic9a98f9beb56c0e29a2a68c04f26eab5d3f18934
---
gnu/packages/astronomy.scm | 2 --
1 file changed, 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5f8fccf3da..a898309d54 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3147,8 +3147,6 @@ (define-public python-glue-qt
(build-system pyproject-build-system)
(arguments
(list
- ;; Broken upstram, see <https://github.com/glue-viz/glue-qt/issues/23>.
- #:tests? #f
#:phases
#~(modify-phases %standard-phases
(add-before 'build 'set-env-version
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:32:05 GMT) Full text and rfc822 format available.Message #86 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 11/34] gnu: python-glue-qt: Update to 0.3.3. Date: Sat, 22 Mar 2025 20:28:44 +0000
* gnu/packages/astronomy.scm (python-glue-qt): Update to 0.3.3.
Change-Id: Id106c594844394111701290020d3e9479b2f18ae
---
gnu/packages/astronomy.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 920376e038..5f8fccf3da 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -3134,7 +3134,7 @@ (define-public python-glue-core
(define-public python-glue-qt
(package
(name "python-glue-qt")
- (version "0.3.2")
+ (version "0.3.3")
(source
(origin
(method git-fetch) ; no fresh release PyPI
@@ -3143,7 +3143,7 @@ (define-public python-glue-qt
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "1zh25y8c98lzsnha4pxm17s6bkkab97rzw9zaik8asrxhc0kgypd"))))
+ (base32 "14qzxszpzjz57bl75ybj8jlx73cd8lsgbb8id9gx4anq9sydzgqj"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:32:05 GMT) Full text and rfc822 format available.Message #89 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 13/34] gnu: python-mpl-animators: Update to 1.2.1. Date: Sat, 22 Mar 2025 20:28:46 +0000
* gnu/packages/astronomy.scm (python-mpl-animators): Update to 1.2.1.
[native-inputs]: Remove python-pytest-xdist and python-setuptools-scm; add
python-setuptools-scm-next.
Change-Id: I69befc54fcb77a7c74a876be93f58eaf5a71fb27
---
gnu/packages/astronomy.scm | 19 +++++++++----------
1 file changed, 9 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index a898309d54..91a5d84d34 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4709,31 +4709,30 @@ (define-public python-kanon
(define-public python-mpl-animators
(package
(name "python-mpl-animators")
- (version "1.2.0")
+ (version "1.2.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "mpl_animators" version))
(sha256
- (base32 "0xxzwxp2zss2s5ci6d349nfdc4hcbm10pqmf5zf14yn66plc1r4k"))))
+ (base32 "1jscdgx1ynqvidh0kc6jxhjlp7lxhilwnp5pb6ddi7nb10as90kz"))))
(build-system pyproject-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
- (add-before 'check 'set-home
- (lambda _
- ;; Relax matplotlib warning: ... because the default path
- ;; (/homeless-shelter/.config/matplotlib) is not a writable
- ;; directory ...
- (setenv "HOME" "/tmp"))))))
+ (add-before 'check 'set-home
+ (lambda _
+ ;; Relax matplotlib warning: ... because the default path
+ ;; (/homeless-shelter/.config/matplotlib) is not a writable
+ ;; directory ...
+ (setenv "HOME" "/tmp"))))))
(native-inputs
(list python-pytest
python-pytest-doctestplus
python-pytest-mpl
- python-pytest-xdist
python-setuptools
- python-setuptools-scm
+ python-setuptools-scm-next
python-wheel))
(propagated-inputs
(list python-astropy
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:32:07 GMT) Full text and rfc822 format available.Message #92 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 32/34] gnu: Add tempo2. Date: Sat, 22 Mar 2025 20:29:05 +0000
* gnu/packages/astronomy.scm (tempo2): New variable.
Change-Id: Ib994ae836b1a40f0c5b1a95d08cc9693a78e9739
---
gnu/packages/astronomy.scm | 38 ++++++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index c1dd9a9b1e..ba697830f6 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -8309,6 +8309,44 @@ (define-public tempo
expansions) are calculated from input timing models.")
(license license:gpl2+)))
+(define-public tempo2
+ (package
+ (name "tempo2")
+ (version "2025.02.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://bitbucket.org/psrsoft/tempo2")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "06494q0zff1qj813y70r014ifm60cminhk7lisy4by022mr6wd3k"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'patch-pathes
+ (lambda _
+ (substitute* (list "bootstrap" "plugin/make_build_settings.sh")
+ (("/bin/bash") (which "bash"))
+ (("/bin/echo") "echo")))))))
+ (native-inputs
+ (list autoconf
+ automake
+ gfortran
+ libtool
+ pkg-config))
+ (home-page "https://bitbucket.org/psrsoft/tempo2")
+ (synopsis "High precision pulsar timing tool")
+ (description
+ "Tempo2 is a pulsar timing package, based on the old FORTRAN TEMPO code
+to address some shortcomings in that code for high precision pulsar timing.
+See related paper
+@url{https://ui.adsabs.harvard.edu/abs/2006MNRAS.369..655H/abstract}.")
+ (license license:gpl3+)))
+
(define-public unsio
;; There is no versioned tag, use the latest commit.
(let ((commit "25e52468298e1194c9726ef5dba9d5fbb46870f5")
--
2.48.1
lars <at> 6xq.net, me <at> bonfacemunyoki.com, sharlatanus <at> gmail.com, tanguy <at> bioneland.org, jgart <at> dismail.de, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:32:07 GMT) Full text and rfc822 format available.Message #95 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 33/34] gnu: Add python-streamtracer. Date: Sat, 22 Mar 2025 20:29:06 +0000
* gnu/packages/python-xyz.scm (python-streamtracer): New variable.
Change-Id: If42d86ac92de197cbd8803dc7da5dfe9704785b5
---
gnu/packages/python-xyz.scm | 57 +++++++++++++++++++++++++++++++++++++
1 file changed, 57 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 7b68ec3390..61ac8e9bbc 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -773,6 +773,63 @@ (define-public python-simplify-polyline
@end itemize")
(license license:expat)))
+(define-public python-streamtracer
+ (package
+ (name "python-streamtracer")
+ (version "2.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "streamtracer" version))
+ (sha256
+ (base32 "01ncr8q58xkz2dydjdg4a0c3kv4mpd6j1lzj4p0cmpg7jdi24cmr"))))
+ (build-system cargo-build-system)
+ (arguments
+ (list
+ #:imported-modules `(,@%cargo-build-system-modules
+ ,@%pyproject-build-system-modules)
+ #:modules '((guix build cargo-build-system)
+ ((guix build pyproject-build-system) #:prefix py:)
+ (guix build utils))
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'build 'build-python-module
+ (assoc-ref py:%standard-phases 'build))
+ (add-after 'build-python-module 'install-python-module
+ (assoc-ref py:%standard-phases 'install))
+ (add-after 'install-python-module 'add-install-to-pythonpath
+ (assoc-ref py:%standard-phases 'add-install-to-pythonpath))
+ (add-after 'check 'check-python-module
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (with-directory-excursion #$output
+ (invoke "pytest" "-vv"))))))
+ #:cargo-inputs
+ `(("rust-ndarray" ,rust-ndarray-0.16)
+ ("rust-numpy" ,rust-numpy-0.22)
+ ("rust-num-derive" ,rust-num-derive-0.4)
+ ("rust-num-traits" ,rust-num-traits-0.2)
+ ("rust-rayon-1" ,rust-rayon-1))
+ #:cargo-development-inputs
+ `(("rust-float-eq" ,rust-float-eq-1)
+ ("rust-pyo3" ,rust-pyo3-0.22))
+ #:install-source? #false))
+ (native-inputs
+ (list maturin
+ python-pytest
+ python-pytest-doctestplus
+ python-wrapper))
+ (propagated-inputs
+ (list python-numpy
+ python-packaging))
+ (home-page "https://github.com/sunpy/streamtracer")
+ (synopsis "Rapid streamline tracing in Python")
+ (description
+ "streamtracer is a Python package for rapid streamline tracing on
+regularly spaced grids. The actual streamline tracing is done at a low level
+in Rust, with a nice Python API provided on top.")
+ (license license:gpl3+)))
+
(define-public python-takethetime
(package
(name "python-takethetime")
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:32:08 GMT) Full text and rfc822 format available.Message #98 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 34/34] gnu: Add python-sunkit-magex. Date: Sat, 22 Mar 2025 20:29:07 +0000
* gnu/packages/astronomy.scm (python-sunkit-magex): New variable.
Change-Id: I646ec32ffb3b772e8e9136d9afc9e828ca18de39
---
gnu/packages/astronomy.scm | 57 ++++++++++++++++++++++++++++++++++++++
1 file changed, 57 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index ba697830f6..3540ddc46c 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -7282,6 +7282,63 @@ (define-public python-stwcs
Telescope, HST}).")
(license license:bsd-3)))
+(define-public python-sunkit-magex
+ (package
+ (name "python-sunkit-magex")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "sunkit_magex" version))
+ (sha256
+ (base32 "1jx1nvb6addnsmafq1s0wrxlcpk0p2hcp6b8ldw0q3sz2dzfpcb0"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "-k"
+ (string-join
+ ;; Some issue with presision in this test.
+ (list "not test_adapt_map"
+ ;; NotImplementedError: is_full_sun_synoptic_map is only
+ ;; implemented for ['CEA', 'CAR'] projections and not
+ "test_car_reproject")
+ " and not "))
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'check 'pre-check
+ ;; FileNotFoundError: [Errno 2] No such file or directory:
+ ;; '/homeless-shelter/.config'
+ (lambda _
+ (setenv "HOME" "/tmp"))))))
+ (native-inputs
+ (list python-pytest
+ python-pytest-arraydiff
+ python-pytest-doctestplus
+ python-reproject
+ python-setuptools
+ python-setuptools-scm
+ python-streamtracer
+ python-sympy
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-numpy
+ python-scikit-image
+ python-scipy
+ python-sunpy))
+ (home-page "https://docs.sunpy.org/projects/sunkit-magex")
+ (synopsis "Solar Magnetic field Extrapolation")
+ (description
+ "This package provides a set of tools for the modelling of magnetic field
+data. It is a SunPy affiliated package and is built on top of @code{sunpy}
+and @code{astropy}.")
+ ;; This project is Copyright (c) The SunPy Community and licensed under
+ ;; the terms of the GNU GPL v3+ license. This package is based upon the
+ ;; Openastronomy packaging guide which is licensed under the BSD 3-clause
+ ;; license. See the licenses folder for more information.
+ (license (list license:gpl3+ license:bsd-3))))
+
(define-public python-tweakwcs
(package
(name "python-tweakwcs")
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:33:06 GMT) Full text and rfc822 format available.Message #101 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 24/34] gnu: Add python-fitsblender. Date: Sat, 22 Mar 2025 20:28:57 +0000
* gnu/packages/astronomy.scm (python-fitsblender): New variable.
Change-Id: I7644ee3d1ae7aefd1d4ff054e9d30953e8e902a9
---
gnu/packages/astronomy.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 1d50c8d04a..35b90be498 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2865,6 +2865,37 @@ (define-public python-extinction
exitinction laws found in the literature.")
(license license:expat)))
+(define-public python-fitsblender
+ (package
+ (name "python-fitsblender")
+ (version "0.4.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "fitsblender" version))
+ (sha256
+ (base32 "1ba1374axaxh3dzzpii6q05z4jcrfp7yjk1wsfm2gzmxalnp0f6r"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-pytest-cov
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-numpy
+ python-stsci-tools))
+ (home-page "https://github.com/spacetelescope/fitsblender")
+ (synopsis "Aggregate values in FITS headers")
+ (description
+ "This package supports the creation of a combined header for a FITS file
+based on the contents of the headers of a set of input FITS images. A rules
+file defines what keywords will be present in the combined output header as
+well as how the output value will be determined from the set of values from
+all the input image headers.")
+ (license license:bsd-3)))
+
(define-public python-fitsio
(package
(name "python-fitsio")
--
2.48.1
lars <at> 6xq.net, me <at> bonfacemunyoki.com, sharlatanus <at> gmail.com, tanguy <at> bioneland.org, jgart <at> dismail.de, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:33:07 GMT) Full text and rfc822 format available.Message #104 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 25/34] gnu: Add python-simplify-polyline. Date: Sat, 22 Mar 2025 20:28:58 +0000
* gnu/packages/python-xyz.scm (python-simplify-polyline): New variable.
Change-Id: Ib4030f83db16caa07650f35080e7172f7d611f8f
---
gnu/packages/python-xyz.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index d22720619c..7b68ec3390 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -743,6 +743,36 @@ (define-public python-shxparser
many CNC and laser operations.")
(license license:expat)))
+(define-public python-simplify-polyline
+ (package
+ (name "python-simplify-polyline")
+ (version "0.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "simplify_polyline" version))
+ (sha256
+ (base32 "08f6bvwbg04z19pirq4ynsiq89yhbzqh9g6zbnp9fvdnmics7hgw"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-pytest
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-numpy))
+ (home-page "https://github.com/ShayHill/simplify_polyline")
+ (synopsis "Simplify an open or closed polyline")
+ (description
+ "This package implements functionality to work with plyline.
+Features:
+@itemize
+@item Visvalingham-Whyatt - removes the smallest triangles formed by
+three consecutive points in a polyline or polygon
+@item Douglas-Peucker - gives a better representation of the convex hull
+@end itemize")
+ (license license:expat)))
+
(define-public python-takethetime
(package
(name "python-takethetime")
--
2.48.1
andreas <at> enge.fr, bavier <at> posteo.net, sharlatanus <at> gmail.com, guix-patches <at> gnu.org:bug#77190; Package guix-patches.
(Sat, 22 Mar 2025 20:33:08 GMT) Full text and rfc822 format available.Message #107 received at 77190 <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190 <at> debbugs.gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 26/34] gnu: Add python-stwcs. Date: Sat, 22 Mar 2025 20:28:59 +0000
* gnu/packages/astronomy.scm (python-stwcs): New variable.
Change-Id: I3a6e02d076d9716f34dcc6f734c401847476ca8c
---
gnu/packages/astronomy.scm | 71 ++++++++++++++++++++++++++++++++++++++
1 file changed, 71 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 35b90be498..3143867010 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -7068,6 +7068,77 @@ (define-public python-stsci-tools
Institute, STScI} utility functions.")
(license license:bsd-3)))
+(define-public python-stwcs
+ (package
+ (name "python-stwcs")
+ (version "1.7.3") ; any newer version requires NumPy 2+
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "stwcs" version))
+ (sha256
+ (base32 "12114hx27mgwcwcyz7lghm78g6pbg8j40189lcfi22zsk47fxv11"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "-k" (string-join
+ ;; XXX: Test requiring network access to download data
+ ;; from <mast.stsci.edu>, check if the test data may be
+ ;; obtained programmatically.
+ (list "not test1SciExt"
+ "testAllExt"
+ "testHletFromSimpleFITS"
+ "testHletFromString"
+ "testSciExtList"
+ "testSciExtNumList"
+ "testWrongD2IMModel"
+ "testWrongNPOLModel"
+ "testWrongSIPModel"
+ "test_add_radesys"
+ "test_apply_as_alternate_method"
+ "test_apply_as_primary_method"
+ "test_apply_d2im"
+ "test_db_connection"
+ "test_default"
+ "test_new_obs"
+ "test_no_HDRNAME_no_WCSNAME"
+ "test_outwcs"
+ "test_pipeline_sci1"
+ "test_pipeline_sci2"
+ "test_remove_d2im_distortion"
+ "test_remove_npol_distortion"
+ "test_remove_npol_distortion_hdulist"
+ "test_repeate"
+ "test_repeated_updatewcs_use_db"
+ "test_restore_headerlet"
+ "test_simple_sci1"
+ "test_simple_sci2"
+ "test_update_d2im_distortion"
+ "test_update_legacy_file"
+ "test_update_stis_asn"
+ "test_update_waiver_wfpc2")
+ " and not "))))
+ (native-inputs
+ (list nss-certs-for-test
+ python-pytest
+ python-setuptools
+ python-setuptools-scm-next
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-lxml
+ python-numpy
+ python-requests
+ python-stsci-tools))
+ (home-page "https://stwcs.readthedocs.io/en/latest/")
+ (synopsis "WCS based distortion models and coordinate transformation")
+ (description
+ "STWCS provides support for WCS distortion models and coordinate
+transformation for the imaging instruments on the @acronym{Hubble Space
+Telescope, HST}).")
+ (license license:bsd-3)))
+
(define-public python-tweakwcs
(package
(name "python-tweakwcs")
--
2.48.1
Sharlatan Hellseher <sharlatanus <at> gmail.com>:Sharlatan Hellseher <sharlatanus <at> gmail.com>:Message #112 received at 77190-done <at> debbugs.gnu.org (full text, mbox):
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: 77190-done <at> debbugs.gnu.org Subject: [PATCH 00/34] Astro update 2025/03. Date: Mon, 31 Mar 2025 21:19:25 +0100
[Message part 1 (text/plain, inline)]
Pushed to master as: dfe263bd13 * gnu: Add python-sunkit-magex. 0b599568d5 * gnu: Add python-streamtracer. 1fe05a5f06 * gnu: Add tempo2. 54fa3af910 * gnu: Add python-pint-pulsar. c2647f5d3b * gnu: Add tempo. 5b4368e5ce * gnu: Add python-numdifftools. 34411663a9 * gnu: Add python-algopy. 45d2185c84 * gnu: Add python-stsci-skypac. 072498187b * gnu: Add python-stwcs. 8fbb0cc233 * gnu: Add python-simplify-polyline. e38e11d9f9 * gnu: Add python-fitsblender. 60795b5421 * gnu: Add python-stsci-tools. f47200bc2c * gnu: python-viresclient: Update to 0.12.3. 5ea0c437f2 * gnu: python-sunpy-soar: Update to 1.11.1. 0f79ed2db6 * gnu: python-sunkit-image: Update to 0.6.1. 78fb1e3133 * gnu: python-stpipe: Update to 0.8.1. 526582fb57 * gnu: python-specreduce: Update to 1.5.1. bb3a726196 * gnu: python-radiospectra: Update to 0.6.1. a5043ee7ee * gnu: python-pysat: Update to 3.2.2. 84f1999bee * gnu: python-pixell: Update to 0.28.4. f791ecaf43 * gnu: python-ducc0: Update to 0.37.1. 9addcf3cea * gnu: python-mpl-animators: Update to 1.2.1. a890731c6d * gnu: python-glue-qt: Enable tests. 5a09fe133b * gnu: python-glue-qt: Update to 0.3.3. 7e3eafa50a * gnu: python-crds: Enable some tests. 436c9e512b * gnu: python-crds: Update to 12.1.4. 38b351f930 * gnu: python-astroquery: Adjust inputs. 245a344d1d * gnu: python-astropy-iers-data: Update to 0.2025.3.17.0.34.53. 366e39e770 * gnu: python-skyfield: Update to 1.52. cbef5451cd * gnu: imppg: Update to 2.0.0. 0f1b15c6cf * gnu: casacore: Update to 3.7.1. fdc7167883 * gnu: calcmysky: Update to 0.3.4. 41fc921722 * gnu: ccfits: Update to 2.7. 7780f5a56c * gnu: cfitsio: Update to 4.6.0. -- Oleg
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