Received: (at 77195) by debbugs.gnu.org; 2 Apr 2025 14:31:44 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Wed Apr 02 10:31:44 2025 Received: from localhost ([127.0.0.1]:58741 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1tzz84-000878-7m for submit <at> debbugs.gnu.org; Wed, 02 Apr 2025 10:31:44 -0400 Received: from smtp.hosts.co.uk ([85.233.160.19]:31846) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <pgarlick@HIDDEN>) id 1tzz7x-00086N-2u for 77195 <at> debbugs.gnu.org; Wed, 02 Apr 2025 10:31:40 -0400 Received: from maikeh336.claranet.co.uk ([79.123.23.187] helo=[192.168.0.13]) by smtp.hosts.co.uk with esmtpsa (TLS1.3:TLS_AES_256_GCM_SHA384:256) (Exim) (envelope-from <pgarlick@HIDDEN>) id 1tzz7q-0000000025o-836R; Wed, 02 Apr 2025 15:31:31 +0100 Message-ID: <669abface2382501812bfc4d5a59415488099915.camel@HIDDEN> Subject: Re: [PATCH 0/7] Remove fenics From: Paul Garlick <pgarlick@HIDDEN> To: Andreas Enge <andreas@HIDDEN>, Ludovic =?ISO-8859-1?Q?Court=E8s?= <ludo@HIDDEN> Date: Wed, 02 Apr 2025 15:31:29 +0100 In-Reply-To: <Z-vwD_gqjQeOxqyA@jurong> References: <cover.1743457476.git.andreas@HIDDEN> <87friscb8r.fsf@HIDDEN> <Z-vwD_gqjQeOxqyA@jurong> Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable User-Agent: Evolution 3.46.4-2 MIME-Version: 1.0 X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 77195 Cc: sharlatanus@HIDDEN, efraim@HIDDEN, 77195 <at> debbugs.gnu.org X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.7 (-) Hi Guix, Thank you for the notification that fenics-dolfin is not currently building. It has been a while :-) but I plan to resume maintaining the fenics packages in Guix by the end of this month. A quick look at the build log for fenics-dolfin suggests that the problem is VTK-related; possibly a new VTK version containing an updated function. In terms of the upstream project, fenicsx will replace fenics. It has currently reached version 0.9; the production version may be released later this year. I intend to package fenicsx for Guix, including its new dependencies.=20 Ideally, the fenicsx and fenics packages would co-exist for a period, Best regards, Paul. On Tue, 2025-04-01 at 15:54 +0200, Andreas Enge wrote: > Am Tue, Apr 01, 2025 at 02:33:24PM +0200 schrieb Ludovic Court=C3=A8s: > > My understanding of <https://issues.guix.gnu.org/77195> is that > > only > > =E2=80=98fenics-dolfin=E2=80=99 fails to build, so perhaps we could lim= it to this > > one > > package? > > No strong opinion though. >=20 > Me neither. I tend to rather the other side, why should we keep a > package that is outdated and that probably nobody uses anymore, but > that uses project resources (builds; people trying to fix it when it > potentially stops building, which is bound to happen with > unmaintained > software)? >=20 > So I would drop them all unless someone speaks up who uses any of > them > (or knows someone else who does). >=20 > Andreas >=20
bug-guix@HIDDEN:bug#77195; Package guix.
Full text available.Received: (at 77195) by debbugs.gnu.org; 1 Apr 2025 13:54:45 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue Apr 01 09:54:45 2025 Received: from localhost ([127.0.0.1]:47204 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1tzc4g-0000D3-5M for submit <at> debbugs.gnu.org; Tue, 01 Apr 2025 09:54:44 -0400 Received: from hera.aquilenet.fr ([185.233.100.1]:54984) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <andreas@HIDDEN>) id 1tzc4W-0000B9-Is for 77195 <at> debbugs.gnu.org; Tue, 01 Apr 2025 09:54:37 -0400 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id 5E1A42EB; Tue, 1 Apr 2025 15:54:26 +0200 (CEST) Authentication-Results: hera.aquilenet.fr; none X-Virus-Scanned: Debian amavis at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavis, port 10024) with ESMTP id BIqrOZkPswXs; Tue, 1 Apr 2025 15:54:25 +0200 (CEST) Received: from jurong (176-179-191-150.abo.bbox.fr [176.179.191.150]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 30A4716F; Tue, 1 Apr 2025 15:54:25 +0200 (CEST) Date: Tue, 1 Apr 2025 15:54:23 +0200 From: Andreas Enge <andreas@HIDDEN> To: Ludovic =?iso-8859-15?Q?Court=E8s?= <ludo@HIDDEN> Subject: Re: [PATCH 0/7] Remove fenics Message-ID: <Z-vwD_gqjQeOxqyA@jurong> References: <cover.1743457476.git.andreas@HIDDEN> <87friscb8r.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: 8bit In-Reply-To: <87friscb8r.fsf@HIDDEN> X-Rspamd-Queue-Id: 5E1A42EB X-Spamd-Result: default: False [-6.60 / 15.00]; REPLY(-4.00)[]; BAYES_HAM(-3.00)[99.99%]; MID_RHS_NOT_FQDN(0.50)[]; MIME_GOOD(-0.10)[text/plain]; FROM_EQ_ENVFROM(0.00)[]; MIME_TRACE(0.00)[0:+]; RCVD_TLS_ALL(0.00)[]; RCVD_COUNT_TWO(0.00)[2]; RCPT_COUNT_FIVE(0.00)[5]; ARC_NA(0.00)[]; FREEMAIL_ENVRCPT(0.00)[gmail.com]; RCVD_VIA_SMTP_AUTH(0.00)[]; TO_MATCH_ENVRCPT_ALL(0.00)[]; FROM_HAS_DN(0.00)[]; TO_DN_SOME(0.00)[]; FREEMAIL_CC(0.00)[debbugs.gnu.org, gmail.com, tourbillion-technology.com, flashner.co.il] X-Rspamd-Action: no action X-Spamd-Bar: ------ X-Rspamd-Server: hera X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 77195 Cc: sharlatanus@HIDDEN, pgarlick@HIDDEN, 77195 <at> debbugs.gnu.org, efraim@HIDDEN X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Am Tue, Apr 01, 2025 at 02:33:24PM +0200 schrieb Ludovic Courtès: > My understanding of <https://issues.guix.gnu.org/77195> is that only > ‘fenics-dolfin’ fails to build, so perhaps we could limit to this one > package? > No strong opinion though. Me neither. I tend to rather the other side, why should we keep a package that is outdated and that probably nobody uses anymore, but that uses project resources (builds; people trying to fix it when it potentially stops building, which is bound to happen with unmaintained software)? So I would drop them all unless someone speaks up who uses any of them (or knows someone else who does). Andreas
bug-guix@HIDDEN:bug#77195; Package guix.
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charset="UTF-8" Content-Transfer-Encoding: quoted-printable <div dir=3D"auto"><div>The project is still alive but distracted from other= sources now</div><div dir=3D"auto">=C2=A0(listed above), I think we may sa= crifice deprecated variant and will</div><div dir=3D"auto">=C2=A0check how = to bring a maintained version. No strong opinion to</div><div dir=3D"auto">= keep still working ones or delete them.</div><div><br></div><div data-smart= mail=3D"gmail_signature"><div dir=3D"ltr">VCS: <a href=3D"https://github.in= certo.xyz/" target=3D"_blank">https://github.incerto.xyz/</a>;=C2=A0<a href= =3D"https://git.sr.ht/~hellseher/" target=3D"_blank">https://git.sr.ht/~hel= lseher/</a><br>GPG: 9847 81DE 689C 21C2 6418 0867 76D7 27BF F62C D2B5<br><b= r>=E2=80=A6 =D0=BD=D0=B0=D1=88 =D1=80=D0=B0=D0=B7=D1=83=D0=BC - =D0=BF=D1= =80=D0=B5=D0=B2=D0=BE=D1=81=D1=85=D0=BE=D0=B4=D0=BD=D0=B0=D1=8F =D0=BE=D0= =B1=D1=8A=D1=8F=D1=81=D0=BD=D0=B8=D1=82=D0=B5=D0=BB=D1=8C=D0=BD=D0=B0=D1=8F= =D0=BC=D0=B0=D1=88=D0=B8=D0=BD=D0=B0 =D0=BA=D0=BE=D1=82=D0=BE=D1=80=D0=B0= =D1=8F =D1=81=D0=BF=D0=BE=D1=81=D0=BE=D0=B1=D0=BD=D0=B0 =D0=BD=D0=B0=D0=B9= =D1=82=D0=B8 =D1=81=D0=BC=D1=8B=D1=81=D0=BB =D0=BF=D0=BE=D1=87=D1=82=D0=B8 = =D0=B2 =D1=87=D0=B5=D0=BC =D1=83=D0=B3=D0=BE=D0=B4=D0=BD=D0=BE, =D0=B8=D1= =81=D1=82=D0=BE=D0=BB=D0=BA=D0=BE=D0=B2=D0=B0=D1=82=D1=8C =D0=BB=D1=8E=D0= =B1=D0=BE=D0=B9 =D1=84=D0=B5=D0=BD=D0=BE=D0=BC=D0=B5=D0=BD, =D0=BD=D0=BE = =D1=81=D0=BE=D0=B2=D0=B5=D1=80=D1=88=D0=B5=D0=BD=D0=BD=D0=BE =D0=BD=D0=B5 = =D0=B2 =D1=81=D0=BE=D1=81=D1=82=D0=BE=D1=8F=D0=BD=D0=B8=D0=B8 =D0=BF=D1=80= =D0=B8=D0=BD=D1=8F=D1=82=D1=8C =D0=BC=D1=8B=D1=81=D0=BB=D1=8C =D0=BE =D0=BD= =D0=B5=D0=BF=D1=80=D0=B5=D0=B4=D1=81=D0=BA=D0=B0=D0=B7=D1=83=D0=B5=D0=BC=D0= =BE=D1=81=D1=82=D0=B8.<br></div></div></div><br><div class=3D"gmail_quote g= mail_quote_container"><div dir=3D"ltr" class=3D"gmail_attr">On Tue, 1 Apr 2= 025, 13:34 Ludovic Court=C3=A8s, <<a href=3D"mailto:ludo@HIDDEN">ludo@g= nu.org</a>> wrote:<br></div><blockquote class=3D"gmail_quote" style=3D"m= argin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left= :1ex">Hi,<br> <br> Andreas Enge <<a href=3D"mailto:andreas@HIDDEN" target=3D"_blank" rel= =3D"noreferrer">andreas@HIDDEN</a>> skribis:<br> <br> > Indeed, comments in our source code say that the fenics project has be= en<br> > dormant for three years now. I think fenics-dolfin has not built for<b= r> > months, probably years. So I suppose that nobody actually uses the<br> > fenics packages in Guix, and I would suggest to remove them all on or<= br> > after May 1st. Patch series following.<br> <br> My understanding of <<a href=3D"https://issues.guix.gnu.org/77195" rel= =3D"noreferrer noreferrer" target=3D"_blank">https://issues.guix.gnu.org/77= 195</a>> is that only<br> =E2=80=98fenics-dolfin=E2=80=99 fails to build, so perhaps we could limit t= o this one<br> package?<br> <br> No strong opinion though.<br> <br> Ludo=E2=80=99.<br> </blockquote></div> --0000000000008fe74c0631b6f406--
bug-guix@HIDDEN:bug#77195; Package guix.
Full text available.Received: (at 77195) by debbugs.gnu.org; 1 Apr 2025 12:34:13 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue Apr 01 08:34:13 2025 Received: from localhost ([127.0.0.1]:46958 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1tzaol-0003sZ-8d for submit <at> debbugs.gnu.org; Tue, 01 Apr 2025 08:34:13 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:57718) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <ludo@HIDDEN>) id 1tzaog-0003qL-3R for 77195 <at> debbugs.gnu.org; Tue, 01 Apr 2025 08:34:07 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1tzaoY-0002xc-O7; Tue, 01 Apr 2025 08:33:58 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:Date:References:In-Reply-To:Subject:To: From; bh=FyvX6m/OJykr5tdCIeGkUWGA+0liVKphD9GKmO7d7Ts=; b=PgaLQGM3KvrWVuwQa0jU ldD7khX9tyl/0EzN3cbTZ4x8ojQGFeo5bBkDYfNIlZC6bMmCa6B6y2SCm2dW2amUHKI2xfiTtZ5Rw 8D/FNtUcUHn/Xwjzc2qycoKTSB57KcT/sGWXnB9JQkdk2zCrbxhwsAHtdtmB3+siVhmM/0j3NYfkk v7SzMWzmOuG/e3/xloc7c6dP3wqmZkxVm/b3oSsFrDSVi1ZDkUvPRQSjyPvCiQBN8Rffs/aedTxCD Xxr/73tntfrQoNO/SjZg72Ypozuu5JOpb+4G/YfHCNlLM0soslPLBujvpG54pyQwCR53XspZQrzQ2 AZ489AUsJVoG5A==; From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN> To: Andreas Enge <andreas@HIDDEN> Subject: Re: [PATCH 0/7] Remove fenics In-Reply-To: <cover.1743457476.git.andreas@HIDDEN> (Andreas Enge's message of "Mon, 31 Mar 2025 23:52:49 +0200") References: <cover.1743457476.git.andreas@HIDDEN> X-URL: http://www.fdn.fr/~lcourtes/ X-Revolutionary-Date: Duodi 12 Germinal an 233 de la =?utf-8?Q?R=C3=A9volu?= =?utf-8?Q?tion=2C?= jour du Charme X-PGP-Key-ID: 0x090B11993D9AEBB5 X-PGP-Key: http://www.fdn.fr/~lcourtes/ludovic.asc X-PGP-Fingerprint: 3CE4 6455 8A84 FDC6 9DB4 0CFB 090B 1199 3D9A EBB5 X-OS: x86_64-pc-linux-gnu Date: Tue, 01 Apr 2025 14:33:24 +0200 Message-ID: <87friscb8r.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 77195 Cc: sharlatanus@HIDDEN, pgarlick@HIDDEN, 77195 <at> debbugs.gnu.org, efraim@HIDDEN X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) Hi, Andreas Enge <andreas@HIDDEN> skribis: > Indeed, comments in our source code say that the fenics project has been > dormant for three years now. I think fenics-dolfin has not built for > months, probably years. So I suppose that nobody actually uses the > fenics packages in Guix, and I would suggest to remove them all on or > after May 1st. Patch series following. My understanding of <https://issues.guix.gnu.org/77195> is that only =E2=80=98fenics-dolfin=E2=80=99 fails to build, so perhaps we could limit t= o this one package? No strong opinion though. Ludo=E2=80=99.
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From: Andreas Enge <andreas@HIDDEN>
To: 77195 <at> debbugs.gnu.org
Subject: [PATCH 7/7] gnu: Remove python-fenics-fiat.
Date: Mon, 31 Mar 2025 23:52:56 +0200
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* gnu/packages/simulation.scm (python-fenics-fiat): Delete variable.
Change-Id: I7f2d5b11aeff850718327112e206b54c973e9d4e
---
gnu/packages/simulation.scm | 53 -------------------------------------
1 file changed, 53 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index ce38f30c04..b540ee1919 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -554,59 +554,6 @@ (define-public esmini
some support for generating and analysing traffic scenarios..")
(license license:mpl2.0)))
-;; XXX: This package is quite dated and upstream no longer maintains it: "This
-;; repository was archived by the owner on Feb 21, 2022. It is now read-only."
-;; <https://bitbucket.org/fenics-project/fiat> ->
-;; <https://github.com/FEniCS/fiat> while providing a new refactored fork
-;; <https://github.com/firedrakeproject/fiat>.
-(define-public python-fenics-fiat
- (package
- (name "python-fenics-fiat")
- (version "2019.1.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "fenics-fiat" version))
- (sha256
- (base32 "13sc7lma3d2mh43an7i4kkdbbk4cmvxjk45wi43xnjd7qc38zg4b"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- #~(list
- ;; FIXME: three FIAT test modules are known to fail with recent
- ;; versions of pytest (>= 4). These are skipped for FIAT version
- ;; 2019.1.0 pending an upstream pull request. For details see request
- ;; #59 at https://bitbucket.org/fenics-project/fiat/.
- "--ignore=test/regression/"
- "--ignore=test/unit/test_quadrature.py"
- "--ignore=test/unit/test_reference_element.py"
- "-k" (string-join
- (list "not test_nodality"
- "test_basis_values")
- " and not "))))
- (native-inputs
- (list python-pytest
- python-setuptools
- python-wheel))
- (propagated-inputs
- (list python-numpy
- python-sympy))
- (home-page "https://bitbucket.org/fenics-project/fiat/")
- (synopsis "Tabulation of finite element function spaces")
- (description
- "The FInite element Automatic Tabulator (FIAT) supports generation of
-arbitrary order instances of the Lagrange elements on lines, triangles, and
-tetrahedra. It is also capable of generating arbitrary order instances of
-Jacobi-type quadrature rules on the same element shapes. Further, H(div) and
-H(curl) conforming finite element spaces such as the families of
-Raviart-Thomas, Brezzi-Douglas-Marini and Nedelec are supported on triangles
-and tetrahedra. Upcoming versions will also support Hermite and nonconforming
-elements.
-
-FIAT is part of the FEniCS Project.")
- (license license:lgpl3+)))
-
(define-public fullswof-2d
(let ((revision 505)
(release "1.09.01"))
--
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From: Andreas Enge <andreas@HIDDEN>
To: 77195 <at> debbugs.gnu.org
Subject: [PATCH 6/7] gnu: Remove python-fenics-ufl.
Date: Mon, 31 Mar 2025 23:52:55 +0200
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* gnu/packages/simulation.scm (python-fenics-ufl): Delete variable.
Change-Id: Ib80ed4ef5789e5815537731b828c492919bff697
---
gnu/packages/simulation.scm | 34 ----------------------------------
1 file changed, 34 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index b32bf997df..ce38f30c04 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -554,40 +554,6 @@ (define-public esmini
some support for generating and analysing traffic scenarios..")
(license license:mpl2.0)))
-(define-public python-fenics-ufl
- (package
- (name "python-fenics-ufl")
- (version "2019.1.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "fenics-ufl" version))
- (sha256
- (base32
- "10dz8x3lm68x2w3kkqcjask38h0zkhhak26jdbkppr8g9y8wny7p"))))
- (build-system python-build-system)
- (inputs
- (list python-numpy))
- (native-inputs
- (list python-pytest))
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda _
- (invoke "py.test" "test"))))))
- (home-page "https://bitbucket.org/fenics-project/ufl/")
- (synopsis "Unified language for form-compilers")
- (description "The Unified Form Language (UFL) is a domain specific
-language for declaration of finite element discretizations of
-variational forms. More precisely, it defines a flexible interface
-for choosing finite element spaces and defining expressions for weak
-forms in a notation close to mathematical notation.
-
-UFL is part of the FEniCS Project.")
- (license license:lgpl3+)))
-
-
;; XXX: This package is quite dated and upstream no longer maintains it: "This
;; repository was archived by the owner on Feb 21, 2022. It is now read-only."
;; <https://bitbucket.org/fenics-project/fiat> ->
--
2.49.0
bug-guix@HIDDEN:bug#77195; Package guix.
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From: Andreas Enge <andreas@HIDDEN>
To: 77195 <at> debbugs.gnu.org
Subject: [PATCH 4/7] gnu: Remove python-fenics-ffc.
Date: Mon, 31 Mar 2025 23:52:53 +0200
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* gnu/packages/simulation.scm (python-fenics-ffc): Delete variable.
Change-Id: I4308e0e9a7232e320988962bd7a908f7c9d01a47
---
gnu/packages/simulation.scm | 48 -------------------------------------
1 file changed, 48 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index c5345c934f..5aef3da133 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -691,54 +691,6 @@ (define-public python-fenics-fiat
FIAT is part of the FEniCS Project.")
(license license:lgpl3+)))
-(define-public python-fenics-ffc
- (package
- (name "python-fenics-ffc")
- (version "2019.1.0.post0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "fenics-ffc" version))
- (sha256
- (base32
- "1f2a44ha65fg3a1prrbrsz4dgvibsv0j5c3pi2m52zi93bhwwgg9"))))
- (build-system python-build-system)
- (native-inputs
- (list python-pytest))
- (propagated-inputs
- (list python-fenics-dijitso python-fenics-fiat python-fenics-ufl))
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda _
- (setenv "HOME" (getcwd))
- (with-directory-excursion "test"
- ;; FIXME: the tests in subdirectory
- ;; 'unit/ufc/finite_element' require the ffc_factory
- ;; extension module. This module, located in the 'libs'
- ;; subdirectory, needs to be built and made accessible
- ;; prior to running the tests.
- (invoke "py.test" "unit/" "--ignore=unit/ufc/")
- (with-directory-excursion "uflacs"
- (invoke "py.test" "unit/")))
- #t)))))
- (home-page "https://bitbucket.org/fenics-project/ffc/")
- (synopsis "Compiler for finite element variational forms")
- (description "The FEniCS Form Compiler (FFC) is a compiler for
-finite element variational forms. From a high-level description of
-the form, it generates efficient low-level C++ code that can be used
-to assemble the corresponding discrete operator (tensor). In
-particular, a bilinear form may be assembled into a matrix and a
-linear form may be assembled into a vector. FFC may be used either
-from the command line (by invoking the @code{ffc} command) or as a
-Python module (@code{import ffc}).
-
-FFC is part of the FEniCS Project.")
- ;; There are two files released with a public domain licence;
- ;; ufc.h and ufc_geometry.h, in subdirectory 'ffc/backends/ufc'.
- (license (list license:public-domain license:lgpl3+))))
-
(define-public fullswof-2d
(let ((revision 505)
(release "1.09.01"))
--
2.49.0
bug-guix@HIDDEN:bug#77195; Package guix.
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From: Andreas Enge <andreas@HIDDEN>
To: 77195 <at> debbugs.gnu.org
Subject: [PATCH 2/7] gnu: Remove fenics.
Date: Mon, 31 Mar 2025 23:52:51 +0200
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* gnu/packages/simulation.scm (fenics): Delete variable.
Change-Id: I3d34832d935c2a6ebcd6ec71e6e9a7167a0a59f6
---
gnu/packages/simulation.scm | 129 ------------------------------------
1 file changed, 129 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 161e6a85d4..102cbf8977 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -909,135 +909,6 @@ (define-public fenics-dolfin
license:expat
license:lgpl3+))))
-(define-public fenics
- (package/inherit fenics-dolfin
- (name "fenics")
- (build-system python-build-system)
- (inputs
- (modify-inputs (package-inputs fenics-dolfin)
- (delete "python")
- (prepend pybind11 python-matplotlib)))
- (native-inputs
- (modify-inputs (package-native-inputs fenics-dolfin)
- (prepend cmake-minimal python-ply python-pytest python-decorator)))
- (propagated-inputs
- (list fenics-dolfin
- python-petsc4py
- python-slepc4py
-
- ;; 'dolfin/jit/jit.py' parses 'dolfin.pc' at run time.
- python-pkgconfig))
- (arguments
- (list #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'relax-requirements
- (lambda _
- (substitute* "python/setup.py"
- (("pybind11==")
- "pybind11>="))))
- (add-after 'unpack 'set-dolfin-pc-file-name
- (lambda* (#:key inputs #:allow-other-keys)
- ;; Instead of cluttering the user's 'PKG_CONFIG_PATH' environment
- ;; variable, hard-code the 'dolfin.pc' absolute file name.
- (let ((pc-file (search-input-file inputs
- "/lib/pkgconfig/dolfin.pc")))
- (substitute* "python/dolfin/jit/jit.py"
- (("pkgconfig\\.parse\\(\"dolfin\"\\)")
- (string-append "pkgconfig.parse(\"" pc-file
- "\")"))))))
- (add-after 'patch-source-shebangs 'set-paths
- (lambda _
- ;; Define paths to store locations.
- (setenv "PYBIND11_DIR" #$(this-package-input "pybind11"))
- ;; Move to python sub-directory.
- (chdir "python")))
- (add-after 'build 'mpi-setup
- #$%openmpi-setup)
- (add-before 'check 'pre-check
- (lambda _
- ;; Exclude three tests that generate
- ;; 'NotImplementedError' in matplotlib version 3.1.2.
- ;; See
- ;; <https://github.com/matplotlib/matplotlib/issues/15382>.
- ;; Also exclude tests that require meshes supplied by
- ;; git-lfs.
- (substitute* "demo/test.py"
- (("(.*stem !.*)" line)
- (string-append line
- "\n"
- "excludeList = [\n"
- "'built-in-meshes', \n"
- "'hyperelasticity', \n"
- "'elasticity', \n"
- "'multimesh-quadrature', \n"
- "'multimesh-marking', \n"
- "'mixed-poisson-sphere', \n"
- "'mesh-quality', \n"
- "'lift-drag', \n"
- "'elastodynamics', \n"
- "'dg-advection-diffusion', \n"
- "'curl-curl', \n"
- "'contact-vi-tao', \n"
- "'contact-vi-snes', \n"
- "'collision-detection', \n"
- "'buckling-tao', \n"
- "'auto-adaptive-navier-stokes', \n"
- "'advection-diffusion', \n"
- "'subdomains', \n"
- "'stokes-taylor-hood', \n"
- "'stokes-mini', \n"
- "'navier-stokes', \n"
- "'eigenvalue']\n"
- "demos = ["
- "d for d in demos if d[0].stem not in "
- "excludeList]\n")))
- (setenv "HOME"
- (getcwd))
- ;; Restrict OpenBLAS to MPI-only in preference to MPI+OpenMP.
- (setenv "OPENBLAS_NUM_THREADS" "1")))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (with-directory-excursion "test"
- (invoke "pytest"
- "unit"
- ;; The test test_snes_set_from_options() in the file
- ;; unit/nls/test_PETScSNES_solver.py fails and is ignored.
- "--ignore"
- "unit/nls/test_PETScSNES_solver.py"
- ;; Fails with a segfault.
- "--ignore"
- "unit/io/test_XDMF.py")))))
- (add-after 'install 'install-demo-files
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((demos (string-append (assoc-ref outputs "out")
- "/share/python-dolfin/demo")))
- (mkdir-p demos)
- (with-directory-excursion "demo"
- (for-each (lambda (file)
- (let* ((dir (dirname file))
- (tgt-dir (string-append
- demos "/" dir)))
- (unless (equal? "." dir)
- (mkdir-p tgt-dir)
- (install-file file tgt-dir))))
- (find-files "." ".*\\.(py|gz|xdmf)$")))))))))
- (home-page "https://fenicsproject.org/")
- (synopsis "High-level environment for solving differential equations")
- (description
- "@code{fenics} is a computing platform for solving general classes of
-problems that involve differential equations. @code{fenics} facilitates
-access to efficient methods for dealing with ordinary differential
-equations (ODEs) and partial differential equations (PDEs). Systems of
-equations such as these are commonly encountered in areas of engineering,
-mathematics and the physical sciences. It is particularly well-suited to
-problems that can be solved using the Finite Element Method (FEM).
-
-@code{fenics} is the top level of the set of packages that are developed
-within the FEniCS project. It provides the python user interface to the
-FEniCS core components and external libraries.")
- (license license:lgpl3+)))
-
(define-public fullswof-2d
(let ((revision 505)
(release "1.09.01"))
--
2.49.0
bug-guix@HIDDEN:bug#77195; Package guix.
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From: Andreas Enge <andreas@HIDDEN>
To: 77195 <at> debbugs.gnu.org
Subject: [PATCH 5/7] gnu: Remove python-fenics-dijitso.
Date: Mon, 31 Mar 2025 23:52:54 +0200
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* gnu/packages/simulation.scm (python-fenics-dijitso): Delete variable.
Change-Id: Ie0b071dd08b7185d37044a1d4941c71793e16b8c
---
gnu/packages/simulation.scm | 50 -------------------------------------
1 file changed, 50 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 5aef3da133..b32bf997df 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -554,56 +554,6 @@ (define-public esmini
some support for generating and analysing traffic scenarios..")
(license license:mpl2.0)))
-(define-public python-fenics-dijitso
- (package
- (name "python-fenics-dijitso")
- (version "2019.1.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "fenics-dijitso" version))
- (sha256
- (base32 "0lhqsq8ypdak0ahr2jnyvg07yrqp6wicjxi6k56zx24wp3qg60sc"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'build 'mpi-setup
- #$%openmpi-setup)
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (setenv "HOME" "/tmp")
- (with-directory-excursion "test"
- ;; Disable parallel tests to avoid race condition. See
- ;; https://github.com/pytest-dev/pytest-cov/issues/237.
- (substitute* "runtests.sh"
- (("for p in 1 4 8 16; do") "for p in 1; do"))
- (invoke "./runtests.sh"))))))))
- (native-inputs
- (list python-pytest
- python-pytest-cov
- python-setuptools
- python-wheel))
- (inputs
- (list openmpi python-numpy))
- (propagated-inputs
- (list python-mpi4py))
- (home-page "https://bitbucket.org/fenics-project/dijitso/")
- (synopsis "Distributed just-in-time building of shared libraries")
- (description
- "Dijitso provides a core component of the @code{FEniCS} framework,
-namely the just-in-time compilation of C++ code that is generated from
-Python modules. It is called from within a C++ library, using ctypes
-to import the dynamic shared library directly.
-
-As long as the compiled code can provide a simple factory function to
-a class implementing a predefined C++ interface, there is no limit to
-the complexity of that interface. Parallel support depends on the
-@code{mpi4py} interface.")
- (license license:lgpl3+)))
-
(define-public python-fenics-ufl
(package
(name "python-fenics-ufl")
--
2.49.0
bug-guix@HIDDEN:bug#77195; Package guix.
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To: 77195 <at> debbugs.gnu.org
Subject: [PATCH 3/7] gnu: Remove fenics-dolfin.
Date: Mon, 31 Mar 2025 23:52:52 +0200
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* gnu/packages/simulation.scm (fenics-dolfin): Delete variable.
Change-Id: If3eed285af25544a2369afecd6c525b160804d78
---
gnu/packages/simulation.scm | 170 ------------------------------------
1 file changed, 170 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 102cbf8977..c5345c934f 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -739,176 +739,6 @@ (define-public python-fenics-ffc
;; ufc.h and ufc_geometry.h, in subdirectory 'ffc/backends/ufc'.
(license (list license:public-domain license:lgpl3+))))
-(define-public fenics-dolfin
- (package
- (name "fenics-dolfin")
- (version "2019.1.0.post0")
- (source
- (origin
- (method url-fetch)
- (uri (string-append
- "https://bitbucket.org/fenics-project/dolfin/get/"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32
- "1m91hwcq5gfj4qqswp8l8kj58nia48f0n4kq13w0xqj4biq7rla0"))
- (patches (search-patches "fenics-dolfin-algorithm.patch"
- "fenics-dolfin-demo-init.patch"
- "fenics-dolfin-boost.patch"
- "fenics-dolfin-config-slepc.patch"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; Make sure we don't use the bundled test framework.
- (delete-file-recursively "test/unit/cpp/catch")
- (substitute* "test/unit/cpp/main.cpp"
- ;; Use standard search paths for 'catch' header file.
- (("#include.*")
- "#include <catch.hpp>\n"))
- (substitute* "test/unit/cpp/CMakeLists.txt"
- ;; Specify directory to find the header file.
- (("(^set\\(CATCH_INCLUDE_DIR ).*(/catch\\))" _ front back)
- (string-append front
- "$ENV{CATCH_DIR}/include" back "\n")))))))
- (build-system cmake-build-system)
- (inputs
- (list openblas
- boost
- eigen
- hdf5-parallel-openmpi
- libxml2
- openmpi
- python-3
- pt-scotch32
- suitesparse
- sundials-openmpi
- zlib))
- (native-inputs
- (list catch-framework pkg-config))
- (propagated-inputs
- (list python-fenics-ffc petsc-openmpi slepc-openmpi))
- (arguments
- (list #:configure-flags #~`("-DDOLFIN_ENABLE_DOCS:BOOL=OFF"
- "-DDOLFIN_ENABLE_HDF5:BOOL=ON"
- "-DDOLFIN_ENABLE_MPI:BOOL=ON"
- "-DDOLFIN_ENABLE_PARMETIS:BOOL=OFF"
- "-DDOLFIN_ENABLE_SCOTCH:BOOL=ON"
- "-DDOLFIN_ENABLE_SUNDIALS:BOOL=ON"
- "-DDOLFIN_ENABLE_TRILINOS:BOOL=OFF")
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'patch-usr-bin-file 'mpi-setup
- #$%openmpi-setup)
- (add-after 'patch-source-shebangs 'set-paths
- (lambda _
- ;; Define paths to store locations.
- (setenv "BLAS_DIR"
- #$(this-package-input "openblas"))
- (setenv "CATCH_DIR"
- #$(this-package-input "catch"))
- (setenv "LAPACK_DIR"
- #$(this-package-input "openblas"))
- (setenv "PETSC_DIR"
- #$(this-package-input "petsc"))
- (setenv "SLEPC_DIR"
- #$(this-package-input "slepc"))
- (setenv "SCOTCH_DIR"
- #$(this-package-input "scotch"))
- (setenv "SUNDIALS_DIR"
- #$(this-package-input "sundials"))
- (setenv "UMFPACK_DIR"
- #$(this-package-input "suitesparse"))))
- (add-before 'check 'pre-check
- (lambda _
- ;; The Dolfin repository uses git-lfs, whereby web links are
- ;; substituted for large files. Guix does not currently support
- ;; git-lfs, so only the links are downloaded. The tests that
- ;; require the absent meshes cannot run and are skipped.
- ;;
- ;; One serial test fails and is skipped.
- ;; i) demo_multimesh-stokes_serial:
- ;; Warning: Found no facets matching domain for boundary
- ;; condition.
- ;;
- ;; One mpi test fails and is skipped.
- ;; i) demo_stokes-iterative_mpi:
- ;; The MPI_Comm_rank() function was called before MPI_INIT was
- ;; invoked
- (call-with-output-file "CTestCustom.cmake"
- (lambda (port)
- (display (string-append
- "set(CTEST_CUSTOM_TESTS_IGNORE "
- "demo_bcs_serial "
- "demo_bcs_mpi "
- "demo_eigenvalue_serial "
- "demo_eigenvalue_mpi "
- "demo_navier-stokes_serial "
- "demo_navier-stokes_mpi "
- "demo_stokes-taylor-hood_serial "
- "demo_stokes-taylor-hood_mpi "
- "demo_subdomains_serial "
- "demo_advection-diffusion_serial "
- "demo_advection-diffusion_mpi "
- "demo_auto-adaptive-navier-stokes_serial "
- "demo_contact-vi-snes_serial "
- "demo_contact-vi-snes_mpi "
- "demo_contact-vi-tao_serial "
- "demo_contact-vi-tao_mpi "
- "demo_curl-curl_serial "
- "demo_curl-curl_mpi "
- "demo_dg-advection-diffusion_serial "
- "demo_dg-advection-diffusion_mpi "
- "demo_elasticity_serial "
- "demo_elasticity_mpi "
- "demo_elastodynamics_serial "
- "demo_elastodynamics_mpi "
- "demo_lift-drag_serial "
- "demo_lift-drag_mpi "
- "demo_mesh-quality_serial "
- "demo_mesh-quality_mpi "
- "demo_multimesh-stokes_serial "
- ")\n") port)))))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "make" "unittests")
- (invoke "make" "demos")
- (invoke "ctest" "-R" "unittests")
- (invoke "ctest" "-R" "demo" "-R" "serial")
- (invoke "ctest" "-R" "demo" "-R" "mpi")))))))
- (home-page "https://bitbucket.org/fenics-project/dolfin/")
- (synopsis "Problem solving environment for differential equations")
- (description
- "DOLFIN is a computational framework for finding numerical
-solutions to problems described by differential equations. Numerical
-models in DOLFIN are constructed using general families of finite
-elements. Data structures are provided for discretizing the governing
-system on a computational mesh. A compact syntax, similar to
-mathematical notation, is made available for defining function spaces
-and expressing variational forms. Interfaces to specialized matrix
-solvers are provided for solving the resultant linear systems.
-
-@code{fenics-dolfin} is part of the FEniCS project. It is the C++
-user interface to the FEniCS core components and external libraries.")
- ;; The source code for the DOLFIN C++ library is licensed under the
- ;; GNU Lesser General Public License, version 3 or later, with the
- ;; following exceptions:
- ;;
- ;; public-domain: dolfin/geometry/predicates.cpp
- ;; dolfin/geometry/predicates.h
- ;;
- ;; zlib: dolfin/io/base64.cpp
- ;; dolfin/io/base64.h
- ;;
- ;; expat: dolfin/io/pugiconfig.hpp
- ;; dolfin/io/pugixml.cpp
- ;; dolfin/io/pugixml.hpp
- (license (list license:public-domain
- license:zlib
- license:expat
- license:lgpl3+))))
-
(define-public fullswof-2d
(let ((revision 505)
(release "1.09.01"))
--
2.49.0
bug-guix@HIDDEN:bug#77195; Package guix.
Full text available.
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From: Andreas Enge <andreas@HIDDEN>
To: 77195 <at> debbugs.gnu.org
Subject: [PATCH 1/7] gnu: Remove python-dolfin-adjoint.
Date: Mon, 31 Mar 2025 23:52:50 +0200
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* gnu/packages/simulation.scm (python-dolfin-adjoint): Delete variable.
Change-Id: Ia2bec142747a44a74cf35145838c9c5d440a8a4b
---
gnu/packages/simulation.scm | 92 -------------------------------------
1 file changed, 92 deletions(-)
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index ebfe477265..161e6a85d4 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -1187,98 +1187,6 @@ (define-public python-pygmsh
command-line utility for mesh optimisation.")
(license license:gpl3+)))
-(define-public python-dolfin-adjoint
- (package
- (name "python-dolfin-adjoint")
- (version "2019.1.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/dolfin-adjoint/pyadjoint")
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0xhy76a5f33hz94wc9g2mc5qmwkxfccbbc6yxl7psm130afp8lhn"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; One of the migration tests attempts to call openmpi
- ;; recursively and fails. See
- ;; https://bitbucket.org/mpi4py/mpi4py/issues/95. Run the
- ;; test sequentially instead.
- (with-directory-excursion "tests/migration/optimal_control_mms"
- (substitute* "test_optimal_control_mms.py"
- (("\\\"mpirun\\\", \\\"-n\\\", \\\"2\\\", ") "")))
- ;; Result files are regenerated in the check phase.
- (delete-file-recursively
- "tests/migration/viscoelasticity/test-results")))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- #~(list
- ;; Ignore tests which require missing packages and/or failed during
- ;; tests collection.
- "--ignore=tests/firedrake_adjoint/test_assignment.py"
- "--ignore=tests/firedrake_adjoint/test_burgers_newton.py"
- "--ignore=tests/firedrake_adjoint/test_dynamic_meshes.py"
- "--ignore=tests/firedrake_adjoint/test_hessian.py"
- "--ignore=tests/firedrake_adjoint/test_reduced_functional.py"
- "--ignore=tests/firedrake_adjoint/test_shape_derivatives.py"
- "--ignore=tests/firedrake_adjoint/test_solving.py"
- "--ignore=tests/firedrake_adjoint/test_tlm.py"
- "--ignore=tests/migration/burgers_newton/test_burgers_newton.py"
- "--ignore=tests/migration/linear_solver/test_linear_solver.py"
- "--ignore=tests/migration/optimization_scipy/test_optimization_scipy.py"
- "--ignore=tests/migration/projection/test_projection.py"
- "--ignore=tests/migration/reduced_functional/test_reduced_functional.py"
- "--ignore=tests/migration/split/test_split.py"
- "-k" (string-append "not test_read_checkpoint"
- " and not test_krylov_solver_preconditioner_function_ctrl"))
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'build 'mpi-setup #$%openmpi-setup)
- (add-before 'check 'set-environment-variables
- (lambda _
- (setenv "HOME" (getcwd))))
- (add-after 'install 'install-doc
- (lambda _
- (let* ((doc (string-append #$output "/share/doc/" #$name "-" #$version))
- (examples (string-append doc "/examples")))
- (mkdir-p examples)
- (copy-recursively "examples" examples))))
- ;; Remove 'sanity-check, because it tries to import
- ;; firedrake_adjoint after importing fenics_adjoint.
- ;; Both load a module named 'backend' and firedrake_adjoint
- ;; fails with an ImportError if it sees that the backend module
- ;; has already been loaded.
- (delete 'sanity-check))))
- (inputs
- (list fenics openmpi pybind11))
- (native-inputs
- (list pkg-config
- python-coverage
- python-decorator
- python-flake8
- python-pkgconfig
- python-pytest))
- (propagated-inputs
- (list python-scipy))
- (home-page "https://www.dolfin-adjoint.org")
- (synopsis "Automatic differentiation library")
- (description
- "@code{python-dolfin-adjoint} is a solver of differential equations
-associated with a governing system and a functional of interest. Working from
-the forward model the solver automatically derives the discrete adjoint and
-tangent linear models. These additional models are key ingredients in many
-algorithms such as data assimilation, optimal control, sensitivity analysis,
-design optimisation and error estimation. The dolfin-adjoint project provides
-the necessary tools and data structures for cases where the forward model is
-implemented in @code{fenics} or
-@url{https://firedrakeproject.org,firedrake}.")
- (license license:lgpl3)))
-
(define %commonroad-dont-install-license-at-root
#~(substitute* "setup.py"
(("data_files=\\[\\('.', \\['LICENSE.txt'\\]\\)\\],")
--
2.49.0
bug-guix@HIDDEN:bug#77195; Package guix.
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From: Andreas Enge <andreas@HIDDEN>
To: 77195 <at> debbugs.gnu.org
Subject: [PATCH 0/7] Remove fenics
Date: Mon, 31 Mar 2025 23:52:49 +0200
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Cc: ludo@HIDDEN, sharlatanus@HIDDEN, pgarlick@HIDDEN,
Andreas Enge <andreas@HIDDEN>, efraim@HIDDEN
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Indeed, comments in our source code say that the fenics project has been
dormant for three years now. I think fenics-dolfin has not built for
months, probably years. So I suppose that nobody actually uses the
fenics packages in Guix, and I would suggest to remove them all on or
after May 1st. Patch series following.
PS: Indeed, years ago. See here:
https://issues.guix.gnu.org/57143
Andreas Enge (7):
gnu: Remove python-dolfin-adjoint.
gnu: Remove fenics.
gnu: Remove fenics-dolfin.
gnu: Remove python-fenics-ffc.
gnu: Remove python-fenics-dijitso.
gnu: Remove python-fenics-ufl.
gnu: Remove python-fenics-fiat.
gnu/packages/simulation.scm | 576 ------------------------------------
1 file changed, 576 deletions(-)
base-commit: 5ef3295c8fd8af9beda6f1f30a899044951cda0c
--
2.49.0
bug-guix@HIDDEN:bug#77195; Package guix.
Full text available.Received: (at 77195) by debbugs.gnu.org; 31 Mar 2025 20:31:50 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Mon Mar 31 16:31:50 2025 Received: from localhost ([127.0.0.1]:43099 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1tzLnS-0000pb-5h for submit <at> debbugs.gnu.org; Mon, 31 Mar 2025 16:31:50 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:60550) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <ludo@HIDDEN>) id 1tzLnQ-0000oz-Db for 77195 <at> debbugs.gnu.org; Mon, 31 Mar 2025 16:31:48 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ludo@HIDDEN>) id 1tzLnJ-0003Sn-A8; Mon, 31 Mar 2025 16:31:41 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:Date:References:In-Reply-To:Subject:To: From; bh=uQpfDwXb2dZ+CAH8zakeHZM7Ocx3n5YA9Vqgwp8KAsc=; b=KYfFiAU2n1UlpV5CD5rm P/y0YhJ8oAqd6Cy2n06t1rm5KbQ3aGHiIPUJw5Cu8ZnZM63yifiAsONiavqG4oGIHZghfoAupXqnC 1ieDE3mqmb6X3xBHhElW/hfi0vO6Nh8MmQ/+lRwx7BH1dDHY1mDRF9/SBLy0fQWV4BesX3813nkWc NcG8VlN6T/300TUxdQP5DQ4dHTQbeiNDp/Cp4cMiGIU0v0r4szLubqHR4IE5Zo05BQWWrhjmFtUKo AzBWwiHlwynrGC7TFWej25PokiQi9sASwtSRW4Zwj+mrq7ly7PAhLQIKIq3/a0y4LtDhQ55oZcH3K OvvbHMZnLXJR6g==; From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN> To: Sharlatan Hellseher <sharlatanus@HIDDEN> Subject: Re: bug#77195: fenics-dolfin@HIDDEN: Fails to build, deprecated upstream. In-Reply-To: <875xk07gt1.fsf@HIDDEN> (Sharlatan Hellseher's message of "Sun, 23 Mar 2025 00:04:58 +0000") References: <875xk07gt1.fsf@HIDDEN> Date: Mon, 31 Mar 2025 22:31:36 +0200 Message-ID: <87ecydj61j.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 77195 Cc: Andreas Enge <andreas@HIDDEN>, pgarlick@HIDDEN, 77195 <at> debbugs.gnu.org, efraim@HIDDEN X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -3.3 (---) Hi Oleg, Sharlatan Hellseher <sharlatanus@HIDDEN> skribis: > While checking the full python-science collection build state I've faced > with fenics-dolfin not building for a long time; upstream introduced a > fresh fork: <https://bitbucket.org/fenics-project/dolfin> -> > <https://github.com/FEniCS/dolfinx> which might need some packaging > efforts to bring it in. > > I've fixed the build of python-fenics-fiat, but fenics-dolfin still > failes to build. (Cc: Andreas, who stumbled upon this build failure today.) I think we can remove =E2=80=98fenics-dolfin=E2=80=99 in accordance with th= e deprecation policy. Ludo=E2=80=99.
bug-guix@HIDDEN:bug#77195; Package guix.
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From: Sharlatan Hellseher <sharlatanus@HIDDEN>
To: <bug-guix@HIDDEN>
Subject: fenics-dolfin@HIDDEN: Fails to build, deprecated upstream.
Date: Sun, 23 Mar 2025 00:04:58 +0000
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--=-=-=
Content-Type: text/plain
Hi,
While checking the full python-science collection build state I've faced
with fenics-dolfin not building for a long time; upstream introduced a
fresh fork: <https://bitbucket.org/fenics-project/dolfin> ->
<https://github.com/FEniCS/dolfinx> which might need some packaging
efforts to bring it in.
I've fixed the build of python-fenics-fiat, but fenics-dolfin still
failes to build.
--8<---------------cut here---------------start------------->8---
Generation 86 Mar 20 2025 08:00:04 (current)
guix 77ff73a
repository URL: https://git.savannah.gnu.org/git/guix.git
branch: master
commit: 77ff73a920759437639e8eb77601e51409fefefa
guix refresh --list-dependent fenics-dolfin
Building the following 2 packages would ensure 3 dependent packages are
rebuilt: python-vedo@HIDDEN python-dolfin-adjoint@HIDDEN
--8<---------------cut here---------------end--------------->8---
CC everytone paticipated in <https://issues.guix.gnu.org/33059>
--
Oleg
--=-=-=
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--=-=-=--
Sharlatan Hellseher <sharlatanus@HIDDEN>:bug-guix@HIDDEN.
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