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To: 77246 <at> debbugs.gnu.org
Subject: [PATCH 10/18] gnu: python-pegasusio: Update to 0.9.1.
Date: Tue, 25 Mar 2025 08:56:46 +0100
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* gnu/packages/bioinformatics.scm (python-pegasusio): Update to 0.9.1.
[propagated-inputs]: Add python-cython, python-setuptools. Remove
python-importlib-metadata.
[native-inputs]: Styling from guix style.
---
gnu/packages/bioinformatics.scm | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 172902541a..0eac49a2a1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3323,30 +3323,31 @@ (define-public python-peaks2utr
(define-public python-pegasusio
(package
(name "python-pegasusio")
- (version "0.7.1")
+ (version "0.9.1")
(source (origin
(method url-fetch)
(uri (pypi-uri "pegasusio" version))
(sha256
(base32
- "0gqygspdy398vjymdy6756jmk99s7fhwav9rivdx59kpqjcdxaz9"))))
+ "1vxi6z7jlznp7sgzlbjsl1dzf1h7ypinllnls0lb2773a8vavg5x"))))
(build-system pyproject-build-system)
;; There are no tests.
(arguments (list #:tests? #false))
(propagated-inputs
(list python-anndata
+ python-cython
python-docopt
python-h5py
- python-importlib-metadata
python-loompy
python-natsort
python-numpy
python-pandas
python-pillow
python-scipy
+ python-setuptools
python-zarr))
- (native-inputs (list python-cython python-setuptools-scm
- python-setuptools python-wheel))
+ (native-inputs (list python-cython python-setuptools python-setuptools-scm
+ python-wheel))
(home-page "https://github.com/lilab-bcb/pegasusio")
(synopsis "Read or write single-cell genomics data")
(description
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
Full text available.
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Subject: [PATCH 18/18] gnu: python-aiosmtpd: Update to 1.4.6.
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* gnu/packages/mail.scm (python-aiosmtpd): Update to 1.4.6.
[build-system]: Switch to pyproject.
[arguments]{phases}: Delete it.
{test-flags}: Switch a QA test.
[native-inputs]: Remove python-flufl-testing, python-node. Add
python-pytest, python-pytest-asyncio, python-pytest-cov,
python-pytest-mock, python-setuptools, python-wheel.
---
gnu/packages/mail.scm | 27 ++++++++++++---------------
1 file changed, 12 insertions(+), 15 deletions(-)
diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 8668cda211..23ecf8660b 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -4706,30 +4706,27 @@ (define-public python-authheaders
(define-public python-aiosmtpd
(package
(name "python-aiosmtpd")
- (version "1.2.2")
+ (version "1.4.6")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/aio-libs/aiosmtpd")
- (commit version)))
+ (commit (string-append "v" version))))
(sha256
- (base32 "0083d6nf75xv8nq1il6jabz36v6c452svy4p402csxwwih5pw6sk"))
+ (base32 "0b5y94zc8pq75sjwsifblzgjnliyclkwypi68b2zffrxcdnz27r2"))
(file-name (git-file-name name version))))
- (build-system python-build-system)
+ (build-system pyproject-build-system)
(arguments
- '(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'delete-failing-tests
- (lambda _
- ;; This test uses an expired certificate.
- (delete-file "aiosmtpd/tests/test_smtps.py")
- #t))
- (replace 'check
- (lambda _
- (invoke "python" "-m" "nose2" "-v"))))))
+ ;; This QA test requires git.
+ (list #:test-flags ''("-k" "not test_ge_master")))
(native-inputs
- (list python-flufl-testing python-nose2))
+ (list python-pytest
+ python-pytest-asyncio
+ python-pytest-cov
+ python-pytest-mock
+ python-setuptools
+ python-wheel))
(propagated-inputs
(list python-atpublic))
(home-page "https://aiosmtpd.readthedocs.io/")
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
Full text available.
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To: 77246 <at> debbugs.gnu.org
Subject: [PATCH 17/18] gnu: python-netaddr: Update to 1.3.0.
Date: Tue, 25 Mar 2025 08:56:53 +0100
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* gnu/packages/python-web.scm (python-netaddr): Update to 1.3.0.
[build-system]: Switch to pyproject.
[native-inputs]: Add python-poetry-core, python-pytest,
python-setuptools, python-wheel.
---
gnu/packages/python-web.scm | 18 ++++++++++--------
1 file changed, 10 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 4d4a6d9422..1638ea0a45 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -54,7 +54,7 @@
;;; Copyright © 2022 Peter Polidoro <peter@HIDDEN>
;;; Copyright © 2022 Antero Mejr <antero@HIDDEN>
;;; Copyright © 2022 Luis Henrique Gomes Higino <luishenriquegh2701@HIDDEN>
-;;; Copyright © 2022 Nicolas Graves <ngraves@HIDDEN>
+;;; Copyright © 2022, 2025 Nicolas Graves <ngraves@HIDDEN>
;;; Copyright © 2022 Tomasz Jeneralczyk <tj@HIDDEN>
;;; Copyright © 2022 msimonin <matthieu.simonin@HIDDEN>
;;; Copyright © 2022 Michael Rohleder <mike@HIDDEN>
@@ -4365,18 +4365,20 @@ (define-public python-ndg-httpsclient
(define-public python-netaddr
(package
(name "python-netaddr")
- (version "0.8.0")
+ (version "1.3.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "netaddr" version))
(sha256
- (base32
- "0hx2npi0wnhwlcybilgwlddw6qffx1mb7a3sj4p9s7bvl33mgk6n"))))
- (build-system python-build-system)
- (arguments `(#:tests? #f)) ;; No tests.
- (home-page "https://github.com/drkjam/netaddr/")
- (synopsis "Pythonic manipulation of network addresses")
+ (base32 "12p4ysgawhgkka0sz1dkwgwc2za80dxdp9wvfxivfldmjnc3sg2w"))))
+ (build-system pyproject-build-system)
+ (native-inputs (list python-poetry-core
+ python-pytest
+ python-setuptools
+ python-wheel))
+ (home-page "https://netaddr.readthedocs.io")
+ (synopsis "Pythonic manipulation of network addresses")
(description
"A Python library for representing and manipulating IPv4, IPv6, CIDR, EUI
and MAC network addresses.")
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
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* gnu/packages/python-xyz.scm (python-netaddr): Move from here…
* gnu/packages/python-web.scm (python-netaddr): …to here.
---
gnu/packages/python-web.scm | 20 ++++++++++++++++++++
gnu/packages/python-xyz.scm | 20 --------------------
2 files changed, 20 insertions(+), 20 deletions(-)
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index af37cb5bef..4d4a6d9422 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -4362,6 +4362,26 @@ (define-public python-ndg-httpsclient
(home-page "https://github.com/cedadev/ndg_httpsclient/")
(license license:bsd-3)))
+(define-public python-netaddr
+ (package
+ (name "python-netaddr")
+ (version "0.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "netaddr" version))
+ (sha256
+ (base32
+ "0hx2npi0wnhwlcybilgwlddw6qffx1mb7a3sj4p9s7bvl33mgk6n"))))
+ (build-system python-build-system)
+ (arguments `(#:tests? #f)) ;; No tests.
+ (home-page "https://github.com/drkjam/netaddr/")
+ (synopsis "Pythonic manipulation of network addresses")
+ (description
+ "A Python library for representing and manipulating IPv4, IPv6, CIDR, EUI
+and MAC network addresses.")
+ (license license:bsd-3)))
+
(define-public python-nh3
(package
(name "python-nh3")
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 5c849ca6a2..4ff34b0551 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -17221,26 +17221,6 @@ (define-public python-msgpack-transitional
((".fromstring\\(") ".frombytes("))
#t))))))))
-(define-public python-netaddr
- (package
- (name "python-netaddr")
- (version "0.8.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "netaddr" version))
- (sha256
- (base32
- "0hx2npi0wnhwlcybilgwlddw6qffx1mb7a3sj4p9s7bvl33mgk6n"))))
- (build-system python-build-system)
- (arguments `(#:tests? #f)) ;; No tests.
- (home-page "https://github.com/drkjam/netaddr/")
- (synopsis "Pythonic manipulation of network addresses")
- (description
- "A Python library for representing and manipulating IPv4, IPv6, CIDR, EUI
-and MAC network addresses.")
- (license license:bsd-3)))
-
(define-public python-openstep-plist
(package
(name "python-openstep-plist")
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
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Subject: [PATCH 15/18] gnu: Standardize python-oslo.* package names.
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* gnu/packages/openstack.scm (python-oslo.concurrency,
python-oslo.config, python-oslo.context, python-oslo.i18n,
python-oslo.log, python-oslo.serialization, python-oslo.utils): Rename
packages.
---
gnu/packages/openstack.scm | 76 +++++++++++++++++++-------------------
1 file changed, 38 insertions(+), 38 deletions(-)
diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm
index 80fad32068..e78a1f614f 100644
--- a/gnu/packages/openstack.scm
+++ b/gnu/packages/openstack.scm
@@ -396,11 +396,11 @@ (define-public python-tempest
python-fixtures
python-jsonschema
python-netaddr
- python-oslo.concurrency
- python-oslo.config
- python-oslo.log
- python-oslo.serialization
- python-oslo.utils
+ python-oslo-concurrency
+ python-oslo-config
+ python-oslo-log
+ python-oslo-serialization
+ python-oslo-utils
python-paramiko
python-prettytable
python-pyyaml
@@ -447,7 +447,7 @@ (define-public python-tempest-lib
python-httplib2
python-iso8601
python-jsonschema
- python-oslo.log
+ python-oslo-log
python-paramiko
python-six))
(native-inputs
@@ -465,9 +465,9 @@ (define-public python-tempest-lib
;;; Packages from the Oslo library
;;;
-(define-public python-oslo.concurrency
+(define-public python-oslo-concurrency
(package
- (name "python-oslo.concurrency")
+ (name "python-oslo-concurrency")
(version "5.0.0")
(source (origin
(method url-fetch)
@@ -500,8 +500,8 @@ (define-public python-oslo.concurrency
python-fixtures
python-stestr
python-eventlet))
- (propagated-inputs (list python-fasteners python-oslo.config
- python-oslo.i18n python-oslo.utils))
+ (propagated-inputs (list python-fasteners python-oslo-config
+ python-oslo-i18n python-oslo-utils))
(home-page "https://docs.openstack.org/oslo.concurrency/latest/")
(synopsis "Oslo Concurrency library")
(description "The Oslo Concurrency Library provides utilities for safely
@@ -509,9 +509,9 @@ (define-public python-oslo.concurrency
for running external processes.")
(license asl2.0)))
-(define-public python-oslo.config
+(define-public python-oslo-config
(package
- (name "python-oslo.config")
+ (name "python-oslo-config")
(version "8.7.1")
(source
(origin
@@ -525,7 +525,7 @@ (define-public python-oslo.config
(propagated-inputs
(list python-debtcollector
python-netaddr
- python-oslo.i18n
+ python-oslo-i18n
python-rfc3986
python-requests
python-stevedore
@@ -537,9 +537,9 @@ (define-public python-oslo.config
.ini style configuration files.")
(license asl2.0)))
-(define-public python-oslo.context
+(define-public python-oslo-context
(package
- (name "python-oslo.context")
+ (name "python-oslo-context")
(version "5.0.0")
(source
(origin
@@ -576,9 +576,9 @@ (define-public python-oslo.context
pipeline and used by various modules such as logging.")
(license asl2.0)))
-(define-public python-oslo.i18n
+(define-public python-oslo-i18n
(package
- (name "python-oslo.i18n")
+ (name "python-oslo-i18n")
(version "3.20.0")
(source
(origin
@@ -602,9 +602,9 @@ (define-public python-oslo.i18n
in an application or library.")
(license asl2.0)))
-(define-public python-oslo.log
+(define-public python-oslo-log
(package
- (name "python-oslo.log")
+ (name "python-oslo-log")
(version "5.0.0")
(source
(origin
@@ -622,11 +622,11 @@ (define-public python-oslo.log
(propagated-inputs
(list python-dateutil
python-debtcollector
- python-oslo.config
- python-oslo.context
- python-oslo.i18n
- python-oslo.utils
- python-oslo.serialization
+ python-oslo-config
+ python-oslo-context
+ python-oslo-i18n
+ python-oslo-utils
+ python-oslo-serialization
python-pyinotify))
(native-inputs
(list python-fixtures python-oslotest python-stestr python-testtools
@@ -639,9 +639,9 @@ (define-public python-oslo.log
handlers and support for context specific logging (like resource id’s etc).")
(license asl2.0)))
-(define-public python-oslo.serialization
+(define-public python-oslo-serialization
(package
- (name "python-oslo.serialization")
+ (name "python-oslo-serialization")
(version "4.2.0")
(source
(origin
@@ -657,10 +657,10 @@ (define-public python-oslo.serialization
(lambda* (#:key tests? #:allow-other-keys)
(when tests? (invoke "stestr" "run")))))))
(propagated-inputs
- (list python-msgpack python-oslo.utils python-pbr python-pytz))
+ (list python-msgpack python-oslo-utils python-pbr python-pytz))
(native-inputs
;; For tests.
- (list python-netaddr python-oslo.i18n python-oslotest python-stestr))
+ (list python-netaddr python-oslo-i18n python-oslotest python-stestr))
(home-page "https://launchpad.net/oslo")
(synopsis "Oslo serialization library")
(description
@@ -767,9 +767,9 @@ (define-public python-oslotest
for debugging, and better support for mocking results.")
(license asl2.0)))
-(define-public python-oslo.utils
+(define-public python-oslo-utils
(package
- (name "python-oslo.utils")
+ (name "python-oslo-utils")
(version "4.12.0")
(source
(origin
@@ -786,7 +786,7 @@ (define-public python-oslo.utils
(when tests? (invoke "stestr" "run")))))))
(propagated-inputs
(list python-debtcollector
- python-oslo.i18n
+ python-oslo-i18n
python-iso8601
python-netaddr
python-netifaces
@@ -853,8 +853,8 @@ (define-public python-keystoneauth1
python-hacking
python-lxml
python-oauthlib
- python-oslo.config
- python-oslo.utils
+ python-oslo-config
+ python-oslo-utils
python-oslotest
python-pbr
python-pyyaml
@@ -917,10 +917,10 @@ (define-public python-keystoneclient
python-iso8601
python-keystoneauth1
python-netaddr
- python-oslo.config
- python-oslo.i18n
- python-oslo.serialization
- python-oslo.utils
+ python-oslo-config
+ python-oslo-i18n
+ python-oslo-serialization
+ python-oslo-utils
python-prettytable
python-requests
python-six
@@ -1081,7 +1081,7 @@ (define-public python-openstacksdk
python-statsd
python-stestr
python-testscenarios
- python-oslo.config
+ python-oslo-config
python-oslotest))
(propagated-inputs (list python-appdirs
python-cryptography
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
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Subject: [PATCH 14/18] gnu: python-debtcollector: Update to 3.0.0.
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* gnu/packages/openstack.scm (python-debtcollector): Update to 3.0.0.
[source]: Patch {origin} to remove unwanted native-inputs.
[build-system]: Switch to pyproject-build-system.
[propagated-inputs]: Remove python-six.
[native-inputs]: Add python-doc8, python-fixtures,
python-openstackdocstheme, python-reno, python-setuptools,
python-stestr and python-wheel. Remove python-subunit and
python-testrepository.
---
gnu/packages/openstack.scm | 24 +++++++++++++++++-------
1 file changed, 17 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm
index ac283bd019..80fad32068 100644
--- a/gnu/packages/openstack.scm
+++ b/gnu/packages/openstack.scm
@@ -115,20 +115,30 @@ (define-public python-cliff
(define-public python-debtcollector
(package
(name "python-debtcollector")
- (version "1.19.0")
+ (version "3.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "debtcollector" version))
(sha256
- (base32
- "06c7vyn184y9f0lsrwaz13aq63hdz5fjrd191b8nifx6acsni42f"))))
- (build-system python-build-system)
+ (base32 "0vzarkvjclci98d8lvkix6qj59f7rxp1qg2x6q6is7qfbg91g29a"))
+ (modules '((guix build utils)))
+ (snippet #~(begin
+ (substitute* "test-requirements.txt"
+ (("^(coverage|hacking|pre-commit).*")
+ ""))))))
+ (build-system pyproject-build-system)
(propagated-inputs
- (list python-pbr python-six python-wrapt))
+ (list python-pbr python-wrapt))
(native-inputs
- (list ;; Tests.
- python-subunit python-testrepository python-testtools))
+ (list python-doc8
+ python-fixtures
+ python-openstackdocstheme
+ python-reno
+ python-setuptools
+ python-stestr
+ python-testtools
+ python-wheel))
(home-page "https://www.openstack.org/")
(synopsis
"Find deprecated patterns and strategies in Python code")
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
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Subject: [PATCH 13/18] gnu: pwntools: Update to 4.4.0.
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* gnu/packages/cybersecurity.scm (pwntools): Update to 4.4.0.
---
gnu/packages/cybersecurity.scm | 16 +++++++++++++---
1 file changed, 13 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/cybersecurity.scm b/gnu/packages/cybersecurity.scm
index cb03cbd5aa..c66740b744 100644
--- a/gnu/packages/cybersecurity.scm
+++ b/gnu/packages/cybersecurity.scm
@@ -3,6 +3,7 @@
;;; Copyright © 2020, 2021 Tobias Geerinckx-Rice <me@HIDDEN>
;;; Copyright © 2021 c4droid <c4droid@HIDDEN>
;;; Copyright © 2021 Raghav Gururajan <rg@HIDDEN>
+;;; Copyright © 2025 Nicolas Graves <ngraves@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -30,9 +31,11 @@ (define-module (gnu packages cybersecurity)
#:use-module (gnu packages engineering)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
- #:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages python-build)
+ #:use-module (gnu packages python-compression)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
+ #:use-module (gnu packages python-xyz)
#:use-module (gnu packages time)
#:use-module (gnu packages bioinformatics) ;python-intervaltree
#:use-module (gnu packages emulators))
@@ -123,24 +126,26 @@ (define-public ropgadget
(define-public pwntools
(package
(name "pwntools")
- (version "4.4.0")
+ (version "4.15.0b1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pwntools" version))
(sha256
(base32
- "1qw7j0wwm1878aia08gyw5xljjr26qsbp45w65n4qff672sha5n5"))))
+ "091fsk9rvbjkcsp8mmww0ka26dvznmj4pbqwaiygcw90g3v94zgd"))))
(build-system python-build-system)
(arguments
'(#:tests? #f)) ;XXX: needs a specific version of unicorn
(propagated-inputs
(list capstone
+ python-colored-traceback
python-dateutil
python-intervaltree
python-mako
python-packaging
python-paramiko
+ python-pathlib2
python-psutil
python-pyelftools
python-pygments
@@ -148,9 +153,14 @@ (define-public pwntools
python-pysocks
python-requests
ropgadget
+ python-rpyc
python-six
python-sortedcontainers
+ python-unix-ar
+ python-zstandard
unicorn))
+ (native-inputs
+ (list python-setuptools python-toml python-wheel))
(home-page "https://github.com/Gallopsled/pwntools")
(synopsis
"Capture-the-flag (CTF) framework and exploit development library")
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
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* gnu/packages/python-compression.scm (python-unix-ar): New variable.
---
gnu/packages/python-compression.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/python-compression.scm b/gnu/packages/python-compression.scm
index 5b994d408f..6892b9253c 100644
--- a/gnu/packages/python-compression.scm
+++ b/gnu/packages/python-compression.scm
@@ -11,6 +11,7 @@
;;; Copyright © 2024 TakeV <takev@HIDDEN>
;;; Copyright © 2023 Ivan Vilata i Balaguer <ivan@HIDDEN>
;;; Copyright © 2024 Maxim Cournoyer <maxim.cournoyer@HIDDEN>
+;;; Copyright © 2025 Nicolas Graves <ngraves@HIDDEN>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -764,6 +765,33 @@ (define-public bitshuffle-for-snappy
(inputs '())
(native-inputs '())))
+(define-public python-unix-ar
+ (package
+ (name "python-unix-ar")
+ (version "0.2.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "unix_ar" version))
+ (sha256
+ (base32 "0kicwxsh28x8r34a7cgzv2i65gsd4qjw2vf29pwq4fpsf3n2i4xz"))))
+ (build-system pyproject-build-system)
+ (arguments
+ ;; These tests have timestamp-related issues.
+ (list #:test-flags
+ #~(list "-m" "unittest" "-k" "not test_add and not test_addfile")
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? test-flags #:allow-other-keys)
+ (apply invoke "python" test-flags))))))
+ (native-inputs (list python-pytest python-setuptools python-wheel))
+ (home-page "https://github.com/getninjas/unix_ar")
+ (synopsis "AR file handling in Python")
+ (description "This package provides utilities to handle AR files in
+Python.")
+ (license license:bsd-3)))
+
(define-public python-zipp
(package
(name "python-zipp")
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
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* gnu/packages/python-xyz.scm (python-colored-traceback): New variable.
---
gnu/packages/python-xyz.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 26b4a76670..5c849ca6a2 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1595,6 +1595,34 @@ (define-public python-colored
names for 256 color terminal setups.")
(license license:expat)))
+(define-public python-colored-traceback
+ ;; No tags in upstream repository.
+ (let ((commit "98e6dea7111f7681db823c518f18026374a832b9")
+ (revision "0"))
+ (package
+ (name "python-colored-traceback")
+ (version (git-version "0.4.2" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/staticshock/colored-traceback.py")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "19d5mpwk7398b8fjh6abnr96wz70vf5vb4p207r8sny748rwx451"))))
+ (build-system pyproject-build-system)
+ (arguments
+ ;; Tests are incompatible with current python version.
+ (list #:tests? #f))
+ (propagated-inputs (list python-colorama python-pygments))
+ (native-inputs (list python-setuptools python-wheel))
+ (home-page "https://github.com/staticshock/colored-traceback.py")
+ (synopsis "Automatically color uncaught exception tracebacks")
+ (description "This package provides python utilities to automatically
+color uncaught exception tracebacks.")
+ (license license:isc))))
+
(define-public python-colorful
(package
(name "python-colorful")
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
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* gnu/packages/python-check.scm (python-nptyping)[arguments]
{test-flags}: Ignore failing test.
---
gnu/packages/python-check.scm | 2 ++
1 file changed, 2 insertions(+)
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index 55dd88ada3..265581a17f 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -2636,6 +2636,8 @@ (define-public python-nptyping
(list
#:test-flags
#~(list
+ ;; This one started failing with the last update of Numpy.
+ "--ignore=tests/test_beartype.py"
;; Multiple failures due to undefined names (typing package must be
;; too outdated, or perhaps they use a newer pandas).
"--ignore=tests/test_mypy.py"
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
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* gnu/packages/python-xyz.scm (python-ncls): Update to 0.0.68.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-cython, python-pandas, python-pytest,
python-setuptools, python-wheel.
---
gnu/packages/python-xyz.scm | 16 +++++++++++++---
1 file changed, 13 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 1acc381d9f..26b4a76670 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -3895,14 +3895,24 @@ (define-public python-ncclient
(define-public python-ncls
(package
(name "python-ncls")
- (version "0.0.65")
+ (version "0.0.68")
(source (origin
(method url-fetch)
(uri (pypi-uri "ncls" version))
(sha256
(base32
- "1wx06xqknd2r98w8z93f47g5dpxzn92kamhj8vkq0nj569hf7cg1"))))
- (build-system python-build-system)
+ "14xsnzr34xa4rwfcdjry9aqjs8i03s9fzy6jgrwj3fr3n6msbal1"))))
+ (build-system pyproject-build-system)
+ (arguments
+ ;; Those tests fail with warnings (not errors) for the Numpy update.
+ ;; Remove it at next python-team iteration.
+ (list #:test-flags ''("--ignore=examples/test_all_overlaps_both.py"
+ "--ignore=examples/test_find_overlap_list.py")))
+ (native-inputs (list python-cython
+ python-pandas
+ python-pytest
+ python-setuptools
+ python-wheel))
(propagated-inputs (list python-numpy))
(home-page "https://github.com/endrebak/ncls")
(synopsis "Nested containment list data structure")
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
Full text available.
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* gnu/packages/bioinformatics.scm (python-cell2cell): Update to 0.7.4.
[source]{origin}: Relax requirements in snippet.
---
gnu/packages/bioinformatics.scm | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c6fc760ec0..172902541a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2406,7 +2406,7 @@ (define-public python-bulkvis
(define-public python-cell2cell
(package
(name "python-cell2cell")
- (version "0.6.8")
+ (version "0.7.4")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -2415,7 +2415,7 @@ (define-public python-cell2cell
(file-name (git-file-name name version))
(sha256
(base32
- "1hwww0rcv8sc4k312n4d0jhbyix1jjqgv5djg25bw8127q5iym3s"))
+ "02cqc5rm0qkm0np1k7bim1w7f5qjnwf1jcm5albd9cpvfs4bwgdr"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -2431,6 +2431,8 @@ (define-public python-cell2cell
(("'statannotations',") "")
;; We provide version 1.0.4, which should be fine.
(("'gseapy == 1.0.3'") "'gseapy'")
+ ;; We provide version 0.9.0, which should be fine.
+ (("'tensorly == 0.8.1'") "'tensorly'")
;; Using matplotlib 3.5.2 leads to this bug:
;; https://github.com/earmingol/cell2cell/issues/19 but we
;; can't package a different minor version of matplotlib
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
Full text available.
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* gnu/packages/bioinformatics.scm (python-pyparsing)[native-inputs]:
Add python-pyparsing.
---
gnu/packages/bioinformatics.scm | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d19c40cf40..c6fc760ec0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5994,7 +5994,7 @@ (define-public crossmap
(list python-bx-python python-numpy python-pybigwig python-pysam
zlib))
(native-inputs
- (list python-cython python-nose))
+ (list python-cython python-nose python-pyparsing))
(home-page "https://crossmap.sourceforge.net/")
(synopsis "Convert genome coordinates between assemblies")
(description
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
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* gnu/packages/bioinformatics.scm (python-bx-python): Update to 0.13.0.
---
gnu/packages/bioinformatics.scm | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5065e40a8b..d19c40cf40 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5337,16 +5337,16 @@ (define-public bwa-meth
(define-public python-bx-python
(package
(name "python-bx-python")
- (version "0.9.0")
+ (version "0.13.0")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/bxlab/bx-python")
- (commit "4f4a48d3f227ae390c1b22072867ba86e347bdef")))
+ (commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
- "1c914rw8phiw7zwzngz9i9hdciz5lq53drwdbpl2bd2sf5bj2biy"))))
+ "13318a3lydyg8fxawdb7anrny9a1j1sc1q4nd6pjg8ki5zr9r713"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
Full text available.
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To: 77246 <at> debbugs.gnu.org
Subject: [PATCH 04/18] gnu: python-cesium: Move to (gnu packages astronomy).
Date: Tue, 25 Mar 2025 08:56:40 +0100
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The dependencies of this package are already in (gnu packages astronomy).
* gnu/packages/python-xyz.scm (python-cesium): Move from here…
* gnu/packages/astronomy.scm (python-cesium): …to here.
---
gnu/packages/astronomy.scm | 40 ++++++++++++++++++++++++++++++++++++
gnu/packages/python-xyz.scm | 41 -------------------------------------
2 files changed, 40 insertions(+), 41 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 621cabe3d8..2552aaa42a 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2449,6 +2449,46 @@ (define-public python-ci-watson
"This package contains a helper functionality to test ROMAN and JWST.")
(license license:bsd-3)))
+(define-public python-cesium
+ (package
+ (name "python-cesium")
+ (version "0.12.1")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "cesium" version))
+ (sha256
+ (base32
+ "0jr0ycqz9ns6mcskm4sxx92k40fj3v0x9knjaw5ac9f3mpqxsfbv"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; The installed test files contain the /gnu/store location, not the
+ ;; location of the discovered test files from the build directory.
+ ;; The test framework doesn't like this. The easiest way around
+ ;; this mismatch is to jump to the output directory.
+ (add-before 'check 'check-chdir
+ (lambda _ (chdir #$output))))))
+ (propagated-inputs
+ (list python-click ;XXX required by python-dask
+ python-cloudpickle
+ python-dask
+ python-gatspy
+ python-joblib
+ python-numpy
+ python-pandas
+ python-scikit-learn
+ python-scipy
+ python-toolz))
+ (native-inputs (list python-cython python-pytest python-setuptools-scm
+ python-setuptools python-wheel))
+ (home-page "https://pypi.org/project/cesium/")
+ (synopsis "Library for time-series feature extraction and processing")
+ (description
+ "Cesium is a library for time-series feature extraction and processing.")
+ (license license:bsd-3)))
+
(define-public python-cmyt
(package
(name "python-cmyt")
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 8a6453e592..1acc381d9f 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -185,7 +185,6 @@ (define-module (gnu packages python-xyz)
#:use-module (gnu packages adns)
#:use-module (gnu packages aidc)
#:use-module (gnu packages algebra)
- #:use-module (gnu packages astronomy)
#:use-module (gnu packages attr)
#:use-module (gnu packages audio)
#:use-module (gnu packages autotools)
@@ -21407,46 +21406,6 @@ (define-public python-celery
synchronously (wait until ready).")
(license license:bsd-3)))
-(define-public python-cesium
- (package
- (name "python-cesium")
- (version "0.12.1")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "cesium" version))
- (sha256
- (base32
- "0jr0ycqz9ns6mcskm4sxx92k40fj3v0x9knjaw5ac9f3mpqxsfbv"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- ;; The installed test files contain the /gnu/store location, not the
- ;; location of the discovered test files from the build directory.
- ;; The test framework doesn't like this. The easiest way around
- ;; this mismatch is to jump to the output directory.
- (add-before 'check 'check-chdir
- (lambda _ (chdir #$output))))))
- (propagated-inputs
- (list python-click ;XXX required by python-dask
- python-cloudpickle
- python-dask
- python-gatspy
- python-joblib
- python-numpy
- python-pandas
- python-scikit-learn
- python-scipy
- python-toolz))
- (native-inputs (list python-cython python-pytest python-setuptools-scm
- python-setuptools python-wheel))
- (home-page "https://pypi.org/project/cesium/")
- (synopsis "Library for time-series feature extraction and processing")
- (description
- "Cesium is a library for time-series feature extraction and processing.")
- (license license:bsd-3)))
-
(define-public python-translitcodec
(package
(name "python-translitcodec")
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
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Subject: [PATCH 03/18] gnu: python-cleanlab: Update to 2.7.1.
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* gnu/packages/machine-learning.scm (python-cleanlab): Update to 2.7.1.
---
gnu/packages/machine-learning.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index f762e0dc3c..490827b038 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -2315,7 +2315,7 @@ (define-public python-scikit-rebate
(define-public python-cleanlab
(package
(name "python-cleanlab")
- (version "2.7.0")
+ (version "2.7.1")
;; The version on pypi does not come with tests.
(source (origin
(method git-fetch)
@@ -2325,7 +2325,7 @@ (define-public python-cleanlab
(file-name (git-file-name name version))
(sha256
(base32
- "0f8v5246nzy22r7zswv9vbpxc7wxaqjwry9iq0fqjp2ffch88h6j"))))
+ "073w45azq496x4bhrh8mdywcrg3gk33n13w1pqh1kiykw826ld9b"))))
(build-system pyproject-build-system)
(arguments
(list
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
Full text available.
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Subject: [PATCH 02/18] gnu: pairadise: Add missing native-inputs.
Date: Tue, 25 Mar 2025 08:56:38 +0100
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* gnu/packages/bioinformatics.scm (pairadise)[native-inputs]: Add
python-setuptools and python-wheel.
---
gnu/packages/bioinformatics.scm | 1 +
1 file changed, 1 insertion(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0b45ae08e0..5065e40a8b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14424,6 +14424,7 @@ (define-public pairadise
(lambda _ (chdir "pairadise")))
(add-before 'build '2to3
(lambda _ (invoke "2to3" "--write" "--nobackups" "."))))))
+ (native-inputs (list python-setuptools python-wheel))
(inputs (list star))
(propagated-inputs (list python-pysam))
(home-page "https://github.com/Xinglab/PAIRADISE")
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
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Subject: [PATCH 01/18] gnu: python-biom-format: Update to 2.1.16.
Date: Tue, 25 Mar 2025 08:56:37 +0100
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* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.16.
---
gnu/packages/bioinformatics.scm | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7e0896fd5b..0b45ae08e0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3885,7 +3885,7 @@ (define-public python-bioframe
(define-public python-biom-format
(package
(name "python-biom-format")
- (version "2.1.12")
+ (version "2.1.16")
(source
(origin
(method git-fetch)
@@ -3897,7 +3897,7 @@ (define-public python-biom-format
(file-name (git-file-name name version))
(sha256
(base32
- "06x2d8fv80jp86kd66fm3ragmxrpa2j0lzsbm337ziqjnpsdwc0f"))
+ "1npxjsi7r0w8diq6s37q21cqgrqifl7f483lfn72bn7qrvkvbpyz"))
(modules '((guix build utils)))
;; Delete generated C files.
(snippet
--
2.49.0
guix-patches@HIDDEN:bug#77246; Package guix-patches.
Full text available.Received: (at submit) by debbugs.gnu.org; 25 Mar 2025 07:24:58 +0000 From debbugs-submit-bounces <at> debbugs.gnu.org Tue Mar 25 03:24:57 2025 Received: from localhost ([127.0.0.1]:35904 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1twyef-0001ac-Hd for submit <at> debbugs.gnu.org; Tue, 25 Mar 2025 03:24:57 -0400 Received: from lists.gnu.org ([2001:470:142::17]:46598) by debbugs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.84_2) (envelope-from <ngraves@HIDDEN>) id 1twyeb-0001aJ-Nn for submit <at> debbugs.gnu.org; Tue, 25 Mar 2025 03:24:54 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ngraves@HIDDEN>) id 1twyeU-0008U7-BM for guix-patches@HIDDEN; Tue, 25 Mar 2025 03:24:46 -0400 Received: from 6.mo562.mail-out.ovh.net ([46.105.48.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <ngraves@HIDDEN>) id 1twyeL-0005yQ-Tz for guix-patches@HIDDEN; Tue, 25 Mar 2025 03:24:46 -0400 Received: from director4.derp.mail-out.ovh.net (director4.derp.mail-out.ovh.net [79.137.60.37]) by mo562.mail-out.ovh.net (Postfix) with ESMTPS id 4ZMLyg1TVTz1TYL; Tue, 25 Mar 2025 07:24:27 +0000 (UTC) Received: from director4.derp.mail-out.ovh.net (director4.derp.mail-out.ovh.net. [127.0.0.1]) by director4.derp.mail-out.ovh.net (inspect_sender_mail_agent) with SMTP for <guix-patches@HIDDEN>; Tue, 25 Mar 2025 07:24:27 +0000 (UTC) Received: from mta2.priv.ovhmail-u1.ea.mail.ovh.net (unknown [10.110.164.171]) by director4.derp.mail-out.ovh.net (Postfix) with ESMTPS id 4ZMLyg0qDzzyBQ; Tue, 25 Mar 2025 07:24:27 +0000 (UTC) Received: from ngraves.fr (unknown [10.1.6.4]) by mta2.priv.ovhmail-u1.ea.mail.ovh.net (Postfix) with ESMTPSA id 9071CBA3E1D; Tue, 25 Mar 2025 07:24:26 +0000 (UTC) Authentication-Results: garm.ovh; auth=pass (GARM-105G0067df05aa5-5103-480a-8d8a-45ea04272679, FB45688AE489E0BEC42E54AE58A1B437771C36DF) smtp.auth=ngraves@HIDDEN X-OVh-ClientIp: 90.92.117.144 From: Nicolas Graves <ngraves@HIDDEN> To: guix-patches@HIDDEN Subject: [PATCH python-team 00/18] One more iteration with a few fixes Date: Tue, 25 Mar 2025 08:20:19 +0100 Message-ID: <20250325072424.20360-1-ngraves@HIDDEN> X-Mailer: git-send-email 2.49.0 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Ovh-Tracer-Id: 6497286891325022946 X-VR-SPAMSTATE: OK X-VR-SPAMSCORE: 0 X-VR-SPAMCAUSE: gggruggvucftvghtrhhoucdtuddrgeefvddrtddtgdduiedvtdegucetufdoteggodetrfdotffvucfrrhhofhhilhgvmecuqfggjfdpvefjgfevmfevgfenuceurghilhhouhhtmecuhedttdenucenucfjughrpefhvfevufffkffogggtgfesthekredtredtjeenucfhrhhomheppfhitgholhgrshcuifhrrghvvghsuceonhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrqeenucggtffrrghtthgvrhhnpeetveehffevvdfgtddthedvhfeguefggeffteetueeliedvhffhjeegudehleegheenucfkphepuddvjedrtddrtddruddpledtrdelvddruddujedrudeggeenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepihhnvghtpeduvdejrddtrddtrddupdhmrghilhhfrhhomhepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdhnsggprhgtphhtthhopedvpdhrtghpthhtohepghhuihigqdhprghttghhvghssehgnhhurdhorhhgpdhrtghpthhtohepnhhgrhgrvhgvshesnhhgrhgrvhgvshdrfhhrpdfovfetjfhoshhtpehmohehiedvmgdpmhhouggvpehsmhhtphhouhht DKIM-Signature: a=rsa-sha256; bh=7NFmRwAkuBlVFR14Q95VyWF7Rc/vJlSp4XqDJvhF8zo=; c=relaxed/relaxed; d=ngraves.fr; h=From; s=ovhmo4487190-selector1; t=1742887467; v=1; b=D3rB8uJ7x8W1APV5j9ZxXHCfSfzBmgQ4me4pKBxUq6A4hKXZBFx5sC9nGkFd9QrQi576eQIj 6Ur4bMN9Zwv0VMtdbCBIwkEl2sLqgzZSycGDF97OptDGYiiH/6WekkveF6x2qWUd9xwht8LCKRt A3P+NUmmKsWtGnyhikF3yO01G6jj8N+jvL6l5OphikI/6WIz1UgCrf8e82x6VIxQdiomzp/oE+q Zi0ZsE8q7t/A4YMHy1WJ+LYuUircpxs9A2+xkXhJ9y70QcWkYcuZVfLCmq34OVsJEJofbJ0nSDJ L/PNkSFn3dsPvO4yu7pm4YBSxzx8nX5d5GFrLeBN7ikxA== Received-SPF: permerror client-ip=46.105.48.43; envelope-from=ngraves@HIDDEN; helo=6.mo562.mail-out.ovh.net X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_VALIDITY_CERTIFIED_BLOCKED=0.001, RCVD_IN_VALIDITY_RPBL_BLOCKED=0.001, SPF_HELO_NONE=0.001, T_SPF_PERMERROR=0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: submit Cc: Nicolas Graves <ngraves@HIDDEN> X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Got stuck with wxpython, but here's a few updates tracked locally from ./pre-inst-env guix build --dependents python-setuptools. We have a big issue with a number of packages in bioinformatics that are simply not developped anymore. It's a big part of the failing packages there, but I don't feel comfortable removing them since there's quite some and that they are undevelopped for 4 years not 10 years. Nicolas Graves (18): gnu: python-biom-format: Update to 2.1.16. gnu: pairadise: Add missing native-inputs. gnu: python-cleanlab: Update to 2.7.1. gnu: python-cesium: Move to (gnu packages astronomy). gnu: python-bx-python: Update to 0.13.0. gnu: crossmap: Add missing python-pyparsing native-input. gnu: python-cell2cell: Update to 0.7.4. gnu: python-ncls: Update to 0.0.68. gnu: python-nptyping: Ignore failing test. gnu: python-pegasusio: Update to 0.9.1. gnu: Add python-colored-traceback. gnu: Add python-unix-ar. gnu: pwntools: Update to 4.4.0. gnu: python-debtcollector: Update to 3.0.0. gnu: Standardize python-oslo.* package names. gnu: python-netaddr: Move to (gnu packages python-web). gnu: python-netaddr: Update to 1.3.0. gnu: python-aiosmtpd: Update to 1.4.6. gnu/packages/astronomy.scm | 40 +++++++++++ gnu/packages/bioinformatics.scm | 30 ++++---- gnu/packages/cybersecurity.scm | 16 ++++- gnu/packages/machine-learning.scm | 4 +- gnu/packages/mail.scm | 27 ++++--- gnu/packages/openstack.scm | 100 ++++++++++++++------------ gnu/packages/python-check.scm | 2 + gnu/packages/python-compression.scm | 28 ++++++++ gnu/packages/python-web.scm | 24 ++++++- gnu/packages/python-xyz.scm | 105 +++++++++++----------------- 10 files changed, 233 insertions(+), 143 deletions(-) -- 2.49.0
Nicolas Graves <ngraves@HIDDEN>:guix-patches@HIDDEN.
Full text available.guix-patches@HIDDEN:bug#77246; Package guix-patches.
Full text available.
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