GNU bug report logs - #77537
[PATCH 0/2] gnu: netcdf-cxx4: Move netcdf to the propagated-inputs

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Package: guix-patches; Reported by: Luca Cirrottola <luca.cirrottola@HIDDEN>; Keywords: patch; dated Fri, 4 Apr 2025 16:31:02 UTC; Maintainer for guix-patches is guix-patches@HIDDEN.

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Date: Mon, 7 Apr 2025 12:43:28 +0200
From: Andreas Enge <andreas@HIDDEN>
To: Luca Cirrottola <luca.cirrottola@HIDDEN>
Subject: Re: [PATCH 0/2] gnu: netcdf-cxx4: Move netcdf to the propagated-inputs
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Hello Luca,

Am Fri, Apr 04, 2025 at 06:28:54PM +0200 schrieb Luca Cirrottola:
> Similarly, since "hdf5-parallel-openmpi" includes mpi.h in the hdf5.h
> header file, then "openmpi" should be a propagated input of
> "hdf5-parallel-openmpi".

normally this would be a reason, but here I am not totally sure.
Should it not be possible to replace openmpi by mpich, say? So the users
would be required to add any MPI library, not necessarily openmpi, to
their profile. Or is this just theory and not practice? (If I were right,
then the package might as well be renamed to "hdf5-mpi".)

I am asking because propagation should be avoided as much as possible,
since it may lead to conflicts in profiles.

If we decide to propagate, we would need a longer commit message in the
GNU/Guix style, something like:
    gnu: hdf5-parallel-openmpi: Propagate openmpi.

    * gnu/packages/maths.scm (hdf5-parallel-openmpi)[inputs]: Move hdf5 from
    here...
    [propagated-inputs]: ...to here.

> since "netcdf-cxx4" is a C++ interface to the C library "netcdf", I think the
> latter should be a propagated input.

There would be no problem with the library ("ldd libnetcdf-cxx4.so"
shows that the absolute path to the libnetcdf library is there), but
the include file requires netcdf.h. So here I agree; the reason should
be given in a comment in the packages.

I have adapted the commit message and pushed this second patch.

Thanks,

Andreas
Information forwarded to guix-patches@HIDDEN:
bug#77537; Package guix-patches. Full text available.

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From: Luca Cirrottola <luca.cirrottola@HIDDEN>
To: 77537 <at> debbugs.gnu.org
Subject: [PATCH 2/2] gnu: netcdf-cxx4: Move netcdf to the propagated-inputs.
Date: Fri,  4 Apr 2025 18:39:26 +0200
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---
 gnu/packages/maths.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 0e50e7a460..ad49899d74 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2432,7 +2432,8 @@ (define-public netcdf-cxx4
                                               (search-input-file
                                                %build-inputs
                                                "/lib/libhdf5.so")))))
-    (inputs (list netcdf hdf5))
+    (inputs (list hdf5))
+    (propagated-inputs (list netcdf))
     (home-page "https://github.com/Unidata/netcdf-cxx4")
     (synopsis "NetCDF C++ interface")
     (description
@@ -2447,7 +2448,8 @@ (define-public netcdf-cxx4-parallel-openmpi
     (synopsis "NetCDF C++ interface (with MPI support)")
     (inputs (modify-inputs (package-inputs netcdf-cxx4)
               (prepend openmpi)
-              (replace "hdf5" hdf5-parallel-openmpi)
+              (replace "hdf5" hdf5-parallel-openmpi)))
+    (propagated-inputs (modify-inputs (package-propagated-inputs netcdf-cxx4)
               (replace "netcdf" netcdf-parallel-openmpi)))))
 
 (define-public n2p2
-- 
2.34.1
Information forwarded to guix-patches@HIDDEN:
bug#77537; Package guix-patches. Full text available.

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From: Luca Cirrottola <luca.cirrottola@HIDDEN>
To: 77537 <at> debbugs.gnu.org
Subject: [PATCH 1/2] gnu: hdf5-parallel-openmpi: move openmpi to the
 propagated-inputs.
Date: Fri,  4 Apr 2025 18:39:25 +0200
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---
 gnu/packages/maths.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 6910b32dae..0e50e7a460 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2075,9 +2075,9 @@ (define-public hdf-eos5
 (define-public hdf5-parallel-openmpi
   (package/inherit hdf5
     (name "hdf5-parallel-openmpi")
-    (inputs
+    (propagated-inputs
      `(("mpi" ,openmpi)
-       ,@(package-inputs hdf5)))
+       ,@(package-propagated-inputs hdf5)))
     (arguments
      (substitute-keyword-arguments (package-arguments hdf5)
        ((#:configure-flags flags)
-- 
2.34.1
Information forwarded to guix-patches@HIDDEN:
bug#77537; Package guix-patches. Full text available.

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From: Luca Cirrottola <luca.cirrottola@HIDDEN>
To: guix-patches@HIDDEN
Subject: [PATCH 0/2] gnu: netcdf-cxx4: Move netcdf to the propagated-inputs
Date: Fri,  4 Apr 2025 18:28:54 +0200
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Hello Guix,
since "netcdf-cxx4" is a C++ interface to the C library "netcdf", I think the
latter should be a propagated input.
Similarly, since "hdf5-parallel-openmpi" includes mpi.h in the hdf5.h
header file, then "openmpi" should be a propagated input of
"hdf5-parallel-openmpi".
Let me know what you think.
Cheers,
Luca

Luca Cirrottola (2):
  gnu: hdf5-parallel-openmpi: move openmpi to the propagated-inputs.
  gnu: netcdf-cxx4: Move netcdf to the propagated-inputs.

 gnu/packages/maths.scm | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)


base-commit: 111aacf22fdc0314f41b737106ad70c1899a58e7
-- 
2.34.1
Acknowledgement sent to Luca Cirrottola <luca.cirrottola@HIDDEN>:
New bug report received and forwarded. Copy sent to guix-patches@HIDDEN. Full text available.
Report forwarded to guix-patches@HIDDEN:
bug#77537; Package guix-patches. Full text available.
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