GNU bug report logs - #78169
[PATCH] gnu: Rname bioinformatics clipper to bioinformatics clipper=peak to avoid naming conflict with cpp clipper.

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Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: nomike <nomike <at> nomike.com>
To: guix-patches <at> gnu.org
Cc: nomike <nomike <at> nomike.com>
Subject: [PATCH] gnu: Rname bioinformatics clipper to bioinformatics
 clipper=peak to avoid naming conflict with cpp clipper.
Date: Thu,  1 May 2025 03:22:00 +0200

Change-Id: I31bf7578158712cc042dbbb7a6cfb1187c2329be
---
 gnu/packages/bioinformatics.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0d27d1e232..715be69206 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -27,6 +27,7 @@
 ;;; Copyright © 2022 Antero Mejr <antero <at> mailbox.org>
 ;;; Copyright © 2024 Alexis Simon <alexis.simon <at> runbox.com>
 ;;; Copyright © 2024 Spencer King <spencer.king <at> geneoscopy.com>
+;;; Copyright © 2025 nomike Postmann <nomike <at> nomike.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -6023,9 +6024,9 @@ (define-public cd-hit-auxtools
                         '("cd-hit-dup" "cd-hit-lap" "read-linker")))))))
     (inputs '())))
 
-(define-public clipper
+(define-public clipper-peak
   (package
-    (name "clipper")
+    (name "clipper-peak")
     (version "2.0.1")
     (source (origin
               (method git-fetch)
-- 
2.49.0

Message #8 received at 78169 <at> debbugs.gnu.org (full text, mbox):

From: Nicolas Graves <ngraves <at> ngraves.fr>
To: nomike <nomike <at> nomike.com>, 78169 <at> debbugs.gnu.org
Cc: nomike <nomike <at> nomike.com>
Subject: Re: [bug#78169] [PATCH] gnu: Rname bioinformatics clipper to
 bioinformatics clipper=peak to avoid naming conflict with cpp clipper.
Date: Sat, 24 May 2025 16:03:06 +0200

Hi nomike,

The commit looks fine, but the commit message is too long.  You can
resubmit a patch with the following commit message :

"""
gnu: Rename clipper to clipper-peak.

There's a naming conflict with cpp/bioinformatics clipper.

* gnu/packages/bioinformatics.scm
  (clipper): Delete variable, renamed to clipper-peak.
  (clipper-peak): New variable, renamed from clipper.
  
"""

Or something similar ;)

Cheers !

Nicolas

gnu: Rname bioinformatics clipper to bioinformatics clipper=peak to avoid naming conflict with cpp clipper.


On 2025-05-01 03:22, nomike <at> nomike.com wrote:

> Change-Id: I31bf7578158712cc042dbbb7a6cfb1187c2329be
> ---
>  gnu/packages/bioinformatics.scm | 5 +++--
>  1 file changed, 3 insertions(+), 2 deletions(-)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 0d27d1e232..715be69206 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -27,6 +27,7 @@
>  ;;; Copyright © 2022 Antero Mejr <antero <at> mailbox.org>
>  ;;; Copyright © 2024 Alexis Simon <alexis.simon <at> runbox.com>
>  ;;; Copyright © 2024 Spencer King <spencer.king <at> geneoscopy.com>
> +;;; Copyright © 2025 nomike Postmann <nomike <at> nomike.com>
>  ;;;
>  ;;; This file is part of GNU Guix.
>  ;;;
> @@ -6023,9 +6024,9 @@ (define-public cd-hit-auxtools
>                          '("cd-hit-dup" "cd-hit-lap" "read-linker")))))))
>      (inputs '())))
>  
> -(define-public clipper
> +(define-public clipper-peak
>    (package
> -    (name "clipper")
> +    (name "clipper-peak")
>      (version "2.0.1")
>      (source (origin
>                (method git-fetch)

-- 
Best regards,
Nicolas Graves

Message #11 received at 78169 <at> debbugs.gnu.org (full text, mbox):

From: nomike <nomike <at> nomike.com>
To: 78169 <at> debbugs.gnu.org
Cc: nomike <nomike <at> nomike.com>
Subject: [PATCH v2] gnu: Rename clipper to clipper-peak.
Date: Sun, 25 May 2025 02:45:50 +0200

There's a naming conflict with cpp/bioinformatics clipper.

* gnu/packages/bioinformatics.scm
  (clipper): Delete variable, renamed to clipper-peak.
  (clipper-peak): New variable, renamed from clipper.

Change-Id: I1411fe0eebf4ff322e4dadfbe53758feddc36599
---
 gnu/packages/bioinformatics.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2705fda363..37c43b34bc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -27,6 +27,7 @@
 ;;; Copyright © 2022 Antero Mejr <antero <at> mailbox.org>
 ;;; Copyright © 2024 Alexis Simon <alexis.simon <at> runbox.com>
 ;;; Copyright © 2024 Spencer King <spencer.king <at> geneoscopy.com>
+;;; Copyright © 2025 nomike Postmann <nomike <at> nomike.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -6074,9 +6075,9 @@ (define-public cd-hit-auxtools
                         '("cd-hit-dup" "cd-hit-lap" "read-linker")))))))
     (inputs '())))
 
-(define-public clipper
+(define-public clipper-peak
   (package
-    (name "clipper")
+    (name "clipper-peak")
     (version "2.0.1")
     (source (origin
               (method git-fetch)
-- 
2.49.0

Message #14 received at 78169 <at> debbugs.gnu.org (full text, mbox):

From: Nicolas Graves <ngraves <at> ngraves.fr>
To: control <at> debbugs.gnu.org,78169 <at> debbugs.gnu.org
Subject: QA review for 78169
Date: Sun, 25 May 2025 08:47:31 +0200

user guix
usertag 78169 + reviewed-looks-good
thanks

Trivial, LGTM.

-- 
Best regards,
Nicolas Graves

Message #19 received at 78169-done <at> debbugs.gnu.org (full text, mbox):

From: Christopher Baines <mail <at> cbaines.net>
To: nomike <nomike <at> nomike.com>
Cc: 78169-done <at> debbugs.gnu.org, Nicolas Graves <ngraves <at> ngraves.fr>
Subject: Re: [bug#78169] [PATCH v2] gnu: Rename clipper to clipper-peak.
Date: Mon, 26 May 2025 16:20:19 +0100

[Message part 1 (text/plain, inline)]

nomike <nomike <at> nomike.com> writes:

> There's a naming conflict with cpp/bioinformatics clipper.
>
> * gnu/packages/bioinformatics.scm
>   (clipper): Delete variable, renamed to clipper-peak.
>   (clipper-peak): New variable, renamed from clipper.
>
> Change-Id: I1411fe0eebf4ff322e4dadfbe53758feddc36599
> ---
>  gnu/packages/bioinformatics.scm | 5 +++--
>  1 file changed, 3 insertions(+), 2 deletions(-)

Thanks both, I've pushed this to master as
8b84a2302c5390d257d64a6d431906a5a3695a3e.

Chris

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