X-Loop: help-debbugs@HIDDEN Subject: bug#53406: union-build incorrectly handles grafts Resent-From: John Kehayias <john.kehayias@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: bug-guix@HIDDEN Resent-Date: Fri, 21 Jan 2022 06:50:02 +0000 Resent-Message-ID: <handler.53406.B.16427477545077 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: report 53406 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: 53406 <at> debbugs.gnu.org X-Debbugs-Original-To: "bug-guix@HIDDEN" <bug-guix@HIDDEN> Reply-To: John Kehayias <john.kehayias@HIDDEN> Received: via spool by submit <at> debbugs.gnu.org id=B.16427477545077 (code B ref -1); Fri, 21 Jan 2022 06:50:02 +0000 Received: (at submit) by debbugs.gnu.org; 21 Jan 2022 06:49:14 +0000 Received: from localhost ([127.0.0.1]:60034 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nAnjP-0001Jf-D2 for submit <at> debbugs.gnu.org; Fri, 21 Jan 2022 01:49:14 -0500 Received: from lists.gnu.org ([209.51.188.17]:48342) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <john.kehayias@HIDDEN>) id 1nAnjK-0001JT-8E for submit <at> debbugs.gnu.org; Fri, 21 Jan 2022 01:49:05 -0500 Received: from eggs.gnu.org ([209.51.188.92]:60698) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <john.kehayias@HIDDEN>) id 1nAnjJ-0006gv-4Q for bug-guix@HIDDEN; Fri, 21 Jan 2022 01:49:01 -0500 Received: from mail-4322.protonmail.ch ([185.70.43.22]:45017) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from <john.kehayias@HIDDEN>) id 1nAnjE-0003vh-Rd for bug-guix@HIDDEN; Fri, 21 Jan 2022 01:49:00 -0500 Date: Fri, 21 Jan 2022 06:48:38 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=protonmail.com; s=protonmail2; t=1642747720; bh=oQqkBL3N0SMPokUgGY65iUVw1tcE73C4pJT/n7++rtA=; h=Date:To:From:Reply-To:Subject:Message-ID:From:To:Cc; b=WeFJB1LwigczfTRLc55OxTrEagT2q4TdIuUJQuhnS9e1L4qOXQ+HPFIsN1SFplUSE jokrQubPLPixe6kIPjS/tZL+TxBLgOn2GlPEw1M9vccrIo5Eqe8nCBJLKgo2428ajL i/r1h+vTSI1UhREXoBt8weBe6kBgvYZpS+bg/Nwi3S85b2TUskt3FPuMHwnv4dOL8y V2bExKP/SeKCdgqATbAwsVxknEujTazaUC5iUr9PorpNJvlHGSHfXJeamJSd6q5uog YGcXsod9OhDeLApOgDHE47lRIBi0ak6NXPiq5e1kluZdqhl1iI45H258YxW+Xa9+34 bWHTf3VzPF5YA== From: John Kehayias <john.kehayias@HIDDEN> Message-ID: <qb5FfnNru71KLpoam6DFtOq9W760IINWc1JT8EiB72076ZcVyxELMaZ5eNs_FySDi8W16xDWcw0hQkNG0wSs21T6XmrAkB-QNwG-RHzY3do=@protonmail.com> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="b1_crfdlnRpcNssz3PIPCQ2mGhCaBpv5BWXe4AR8MgDnQ" X-Spam-Status: No, score=-1.2 required=10.0 tests=ALL_TRUSTED,DKIM_SIGNED, DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,FREEMAIL_FROM shortcircuit=no autolearn=disabled version=3.4.4 X-Spam-Checker-Version: SpamAssassin 3.4.4 (2020-01-24) on mailout.protonmail.ch Received-SPF: pass client-ip=185.70.43.22; envelope-from=john.kehayias@HIDDEN; helo=mail-4322.protonmail.ch X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_MSPIKE_H3=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -0.1 (/) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -0.0 (/) This is a multi-part message in MIME format. --b1_crfdlnRpcNssz3PIPCQ2mGhCaBpv5BWXe4AR8MgDnQ Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Hello Guix, Stumbled upon a mysterious problem today with grafts. Let me report what I = see and how to reproduce it: I'm attaching a minimal working example of the problem, namely using union-= build creates the wrong symlink when a package has a propagated input that = has a replacement. At least that seems to be the key ingredients. (Note the= code originally came from another channel, so I left the header intact. Th= e union-build looks the same as in e.g. python-pyqt+qscintilla though.) It looks like a link is made to a wrong (i.e. previous) version library. It= is pointing to the replacement package in the store, but trying to use the= previous name. If I run the attached file with guix build -f graft-test.scm and look at li= bexpat in the created package with, e.g. ls -la $(guix build -f graft-test.scm)/lib/libexpat* I get lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7dw= y2h55gs-fhs-union-0.0/lib/libexpat.la -> /gnu/store/2q8wwhd3prib0swky68rbx9= hl0xxs6hf-expat-2.4.3/lib/libexpat.la* lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7dw= y2h55gs-fhs-union-0.0/lib/libexpat.so -> /gnu/store/2q8wwhd3prib0swky68rbx9= hl0xxs6hf-expat-2.4.3/lib/libexpat.so* lrwxrwxrwx 1 root root 73 Dec 31 1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7dw= y2h55gs-fhs-union-0.0/lib/libexpat.so.1 -> /gnu/store/2q8wwhd3prib0swky68rb= x9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1* lrwxrwxrwx 1 root root 77 Dec 31 1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7dw= y2h55gs-fhs-union-0.0/lib/libexpat.so.1.8.1 -> /gnu/store/2q8wwhd3prib0swky= 68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.1 Note that the last link is broken: looking at this expat library (2.4.3, th= e replacement) it has -r-xr-xr-x 1 root root 961 Dec 31 1969 /gnu/store/2q8wwhd3prib0swky68rbx9= hl0xxs6hf-expat-2.4.3/lib/libexpat.la* lrwxrwxrwx 1 root root 17 Dec 31 1969 /gnu/store/2q8wwhd3prib0swky68rbx9= hl0xxs6hf-expat-2.4.3/lib/libexpat.so -> libexpat.so.1.8.3* lrwxrwxrwx 1 root root 17 Dec 31 1969 /gnu/store/2q8wwhd3prib0swky68rbx9= hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1 -> libexpat.so.1.8.3* -r-xr-xr-x 2 root root 191K Dec 31 1969 /gnu/store/2q8wwhd3prib0swky68rbx9= hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.3* This is why the last link from the union-build package is broken, it tries = to point to libexpat.so.1.8.1 (the previous version, but in the newer versi= on's directory). There are no error or warnings that I saw in building the package or in a p= rofile (e.g. guix shell). I put in an output in the builder to see what dir= ectories were passed to the union-build, giving me directories: (/gnu/store/d0xskl9xjb0z6miaf87xszi8iq6h8sqs-apr-util-1.6.1 /g= nu/store/iwcw80p8lkqsqbvchjvypvl06qlbjc3d-expat-2.4.1) So the original expat propagated-input store directory is passed to the bui= lder (as expected), but in the end it does use the replacement version. Jus= t with a version number gone wrong in a library link. I came across this actually when combining both x86_64 and i686 into a sing= le profile. There it would error on a conflict between file and directory, = but in the lib/cmake of expat, again something with different version numbe= rs appearing but between x86_64 and i686. I don't have an example of that h= andy right now, but it sent me in the direction of seeing why expat was com= ing up, when I came across this (I'm guessing leading to the problem I saw)= . In case it is relevant, I did notice other packages have had explicit repla= cements used in propagated inputs previously, like in https://git.savannah.= gnu.org/cgit/guix.git/commit/?id=3Dc5df560fd3762c0dbe99562f52223c73d445e597= expat is propagated by fontconfig and apr-util, possibly other places? A b= it tricky to search with the expat license and all. This was on commit: e415a73d2c11e43f4db3b797ed73ab6ebcc336e0 My original pr= oblem (conflict in x86_64 and i686 union) happened after the expat replacem= ent commit, 2045852b096131a714409aa0cc4fe17938f60b15 which was my first clu= e. I hope that is helpful in reproducing and finding out what is happening. So= mething to do with union-build I guess, but it is very late here right now = so I hope this all made sense. Happy to help investigate and debug. John --b1_crfdlnRpcNssz3PIPCQ2mGhCaBpv5BWXe4AR8MgDnQ Content-Type: text/x-scheme; name=graft-test.scm Content-Transfer-Encoding: base64 Content-Disposition: attachment; filename=graft-test.scm Ozs7IEdOVSBHdWl4IC0tLSBGdW5jdGlvbmFsIHBhY2thZ2UgbWFuYWdlbWVudCBmb3IgR05VCjs7 OyBDb3B5cmlnaHQgwqkgMjAyMCBwa2lsbC05Cjs7OyBDb3B5cmlnaHQgwqkgMjAyMCwgMjAyMSBp c29uIDxpc29uQGFpcm1haWwuY2M+Cjs7OyBDb3B5cmlnaHQgwqkgMjAyMSBwaW5lYXBwbGVzCjs7 OyBDb3B5cmlnaHQgwqkgMjAyMSBKZWFuLUJhcHRpc3RlIFZvbGF0aWVyIDxqYnZAcG0ubWU+Cjs7 OyBDb3B5cmlnaHQgwqkgMjAyMSBLb3pvIDxrb3pvZGV2QHJ1bmJveC5jb20+Cjs7OyBDb3B5cmln aHQgwqkgMjAyMSBKb2huIEtlaGF5aWFzIDxqb2huLmtlaGF5aWFzQHByb3Rvbm1haWwuY29tPgo7 OzsKOzs7IFRoaXMgZmlsZSBpcyBub3QgcGFydCBvZiBHTlUgR3VpeC4KOzs7Cjs7OyBHTlUgR3Vp eCBpcyBmcmVlIHNvZnR3YXJlOyB5b3UgY2FuIHJlZGlzdHJpYnV0ZSBpdCBhbmQvb3IgbW9kaWZ5 IGl0Cjs7OyB1bmRlciB0aGUgdGVybXMgb2YgdGhlIEdOVSBHZW5lcmFsIFB1YmxpYyBMaWNlbnNl IGFzIHB1Ymxpc2hlZCBieQo7OzsgdGhlIEZyZWUgU29mdHdhcmUgRm91bmRhdGlvbjsgZWl0aGVy IHZlcnNpb24gMyBvZiB0aGUgTGljZW5zZSwgb3IgKGF0Cjs7OyB5b3VyIG9wdGlvbikgYW55IGxh dGVyIHZlcnNpb24uCjs7Owo7OzsgR05VIEd1aXggaXMgZGlzdHJpYnV0ZWQgaW4gdGhlIGhvcGUg dGhhdCBpdCB3aWxsIGJlIHVzZWZ1bCwgYnV0Cjs7OyBXSVRIT1VUIEFOWSBXQVJSQU5UWTsgd2l0 aG91dCBldmVuIHRoZSBpbXBsaWVkIHdhcnJhbnR5IG9mCjs7OyBNRVJDSEFOVEFCSUxJVFkgb3Ig RklUTkVTUyBGT1IgQSBQQVJUSUNVTEFSIFBVUlBPU0UuICBTZWUgdGhlCjs7OyBHTlUgR2VuZXJh bCBQdWJsaWMgTGljZW5zZSBmb3IgbW9yZSBkZXRhaWxzLgo7OzsKOzs7IFlvdSBzaG91bGQgaGF2 ZSByZWNlaXZlZCBhIGNvcHkgb2YgdGhlIEdOVSBHZW5lcmFsIFB1YmxpYyBMaWNlbnNlCjs7OyBh bG9uZyB3aXRoIEdOVSBHdWl4LiAgSWYgbm90LCBzZWUgPGh0dHA6Ly93d3cuZ251Lm9yZy9saWNl bnNlcy8+LgoKKHVzZS1tb2R1bGVzCiAoZ3VpeCBidWlsZC1zeXN0ZW0gdHJpdmlhbCkKIChndWl4 IHBhY2thZ2VzKQogKGdudSBwYWNrYWdlcyBmb250dXRpbHMpCiAoZ251IHBhY2thZ2VzIGFwcikp CgooZGVmaW5lKiAoZmhzLXVuaW9uIGlucHV0cyAjOmtleSAobmFtZSAiZmhzLXVuaW9uIikgKHZl cnNpb24gIjAuMCIpIChzeXN0ZW0gIng4Nl82NC1saW51eCIpKQogICJDcmVhdGUgYSBwYWNrYWdl IGhvdXNpbmcgdGhlIHVuaW9uIG9mIGlucHV0cy4iCiAgKHBhY2thZ2UKICAgIChuYW1lIG5hbWUp CiAgICAodmVyc2lvbiB2ZXJzaW9uKQogICAgKHNvdXJjZSAjZikKICAgIChpbnB1dHMgaW5wdXRz KQogICAgKGJ1aWxkLXN5c3RlbSB0cml2aWFsLWJ1aWxkLXN5c3RlbSkKICAgIChhcmd1bWVudHMK ICAgICBgKCM6c3lzdGVtICxzeXN0ZW0KICAgICAgICM6bW9kdWxlcyAoKGd1aXggYnVpbGQgdW5p b24pKQogICAgICAgIzpidWlsZGVyCiAgICAgICAoYmVnaW4KICAgICAgICAgKHVzZS1tb2R1bGVz IChpY2UtOSBtYXRjaCkKICAgICAgICAgICAgICAgICAgICAgIChndWl4IGJ1aWxkIHVuaW9uKSkK ICAgICAgICAgKG1hdGNoICVidWlsZC1pbnB1dHMKICAgICAgICAgICAoKChfIC4gZGlyZWN0b3Jp ZXMpIC4uLikKICAgICAgICAgICAgKHVuaW9uLWJ1aWxkIChhc3NvYy1yZWYgJW91dHB1dHMgIm91 dCIpCiAgICAgICAgICAgICAgICAgICAgICAgICBkaXJlY3RvcmllcykKICAgICAgICAgICAgKGZv cm1hdCAjdCAiXG4gZGlyZWN0b3JpZXM6IH5hXG4iIGRpcmVjdG9yaWVzKQogICAgICAgICAgICAj dCkpKSkpCiAgICAoaG9tZS1wYWdlICNmKQogICAgKHN5bm9wc2lzICJMaWJyYXJpZXMgdXNlZCBm b3IgRkhTIikKICAgIChkZXNjcmlwdGlvbiAiTGlicmFyaWVzIG5lZWRlZCB0byBidWlsZCBhIGd1 aXggY29udGFpbmVyIEZIUy4iKQogICAgKGxpY2Vuc2UgI2YpKSkKCiAgICAgICAgICAgICAgICAg ICAgICAgICAgICAgICAgICAgICAgICAKOyhmaHMtdW5pb24gKGxpc3QgZm9udGNvbmZpZykpCjso ZmhzLXVuaW9uIChsaXN0IGZvbnRjb25maWcpICM6c3lzdGVtICJpNjg2LWxpbnV4IikKCihmaHMt dW5pb24gKGxpc3QgYXByLXV0aWwpKQo= --b1_crfdlnRpcNssz3PIPCQ2mGhCaBpv5BWXe4AR8MgDnQ--
Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) Content-Type: text/plain; charset=utf-8 X-Loop: help-debbugs@HIDDEN From: help-debbugs@HIDDEN (GNU bug Tracking System) To: John Kehayias <john.kehayias@HIDDEN> Subject: bug#53406: Acknowledgement (union-build incorrectly handles grafts) Message-ID: <handler.53406.B.16427477545077.ack <at> debbugs.gnu.org> References: <qb5FfnNru71KLpoam6DFtOq9W760IINWc1JT8EiB72076ZcVyxELMaZ5eNs_FySDi8W16xDWcw0hQkNG0wSs21T6XmrAkB-QNwG-RHzY3do=@protonmail.com> X-Gnu-PR-Message: ack 53406 X-Gnu-PR-Package: guix Reply-To: 53406 <at> debbugs.gnu.org Date: Fri, 21 Jan 2022 06:50:02 +0000 Thank you for filing a new bug report with debbugs.gnu.org. This is an automatically generated reply to let you know your message has been received. Your message is being forwarded to the package maintainers and other interested parties for their attention; they will reply in due course. Your message has been sent to the package maintainer(s): bug-guix@HIDDEN If you wish to submit further information on this problem, please send it to 53406 <at> debbugs.gnu.org. Please do not send mail to help-debbugs@HIDDEN unless you wish to report a problem with the Bug-tracking system. --=20 53406: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D53406 GNU Bug Tracking System Contact help-debbugs@HIDDEN with problems
X-Loop: help-debbugs@HIDDEN Subject: bug#53406: union-build incorrectly handles grafts References: <qb5FfnNru71KLpoam6DFtOq9W760IINWc1JT8EiB72076ZcVyxELMaZ5eNs_FySDi8W16xDWcw0hQkNG0wSs21T6XmrAkB-QNwG-RHzY3do=@protonmail.com> In-Reply-To: <qb5FfnNru71KLpoam6DFtOq9W760IINWc1JT8EiB72076ZcVyxELMaZ5eNs_FySDi8W16xDWcw0hQkNG0wSs21T6XmrAkB-QNwG-RHzY3do=@protonmail.com> Resent-From: John Kehayias <john.kehayias@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: bug-guix@HIDDEN Resent-Date: Fri, 21 Jan 2022 06:56:02 +0000 Resent-Message-ID: <handler.53406.B53406.16427481085723 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: followup 53406 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: "53406 <at> debbugs.gnu.org" <53406 <at> debbugs.gnu.org> Reply-To: John Kehayias <john.kehayias@HIDDEN> Received: via spool by 53406-submit <at> debbugs.gnu.org id=B53406.16427481085723 (code B ref 53406); Fri, 21 Jan 2022 06:56:02 +0000 Received: (at 53406) by debbugs.gnu.org; 21 Jan 2022 06:55:08 +0000 Received: from localhost ([127.0.0.1]:60047 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nAnpE-0001UF-0s for submit <at> debbugs.gnu.org; Fri, 21 Jan 2022 01:55:08 -0500 Received: from mail-40134.protonmail.ch ([185.70.40.134]:37861) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <john.kehayias@HIDDEN>) id 1nAnpC-0001TW-Ef for 53406 <at> debbugs.gnu.org; Fri, 21 Jan 2022 01:55:07 -0500 Date: Fri, 21 Jan 2022 06:54:57 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=protonmail.com; s=protonmail2; t=1642748099; bh=H+Utp5MvnKRTwjui2DNA99jpdhj9ummiBMEoF2kdiQY=; h=Date:To:From:Reply-To:Subject:Message-ID:From:To:Cc; b=CcAVJ81FqXUUrnG7Se4G1SnQWPdj+UeWDQoVHcSrFyf4udA2h3y4MTtY6JAONubS8 +gSxzGga8WCkKLm/Pb5fE91MuDIfReuk0pKokOvL09HqwkANysjhfHR/9bvXv01pcb gQbT5AR8SQT9AUL++ElkFFADJ+etsjUab5ZakBYyJlBnxYcA5H8PuVTTr89ul9OTJM sW5USrxwMuzzm5D8/XD5J6kZxaUJBMGQW/cf9sTZ/UwDptYgcnlGZEauxshTv85up1 cYO13eHuef0nLcBTMKSNCFZskhngRHGOT5vI39ngU0ioHxikGkbgd50JlovGOWyQgo w3WvP0yIQoDmw== From: John Kehayias <john.kehayias@HIDDEN> Message-ID: <_yV8VwaAQw22nEoGIlm6a7oqlUMtT8nqReMHaxvyjLlwSqLgP5dkF0ro1t88lH9WtZt1jZv7zZXvlK2dkf46dSfbQnolV8IcbGcAl3vH8g4=@protonmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Status: No, score=-1.2 required=10.0 tests=ALL_TRUSTED,DKIM_SIGNED, DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,FREEMAIL_FROM shortcircuit=no autolearn=disabled version=3.4.4 X-Spam-Checker-Version: SpamAssassin 3.4.4 (2020-01-24) on mailout.protonmail.ch X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) Oh, and in the share/doc directory of the union: lrwxrwxrwx 1 root root 71 Dec 31 1969 expat -> /gnu/store/2q8wwhd3prib0swk= y68rbx9hl0xxs6hf-expat-2.4.3/share/doc/expat/ lrwxrwxrwx 1 root root 77 Dec 31 1969 expat-2.4.1 -> /gnu/store/2q8wwhd3pr= ib0swky68rbx9hl0xxs6hf-expat-2.4.3/share/doc/expat-2.4.1 Second link broken, first link correct, both to the replacement (2.4.3 vers= ion) store directory.
X-Loop: help-debbugs@HIDDEN Subject: bug#53406: union-build incorrectly handles grafts Resent-From: John Kehayias <john.kehayias@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: bug-guix@HIDDEN Resent-Date: Sat, 22 Jan 2022 16:57:02 +0000 Resent-Message-ID: <handler.53406.B53406.16428706021175 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: followup 53406 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: "53406 <at> debbugs.gnu.org" <53406 <at> debbugs.gnu.org> Reply-To: John Kehayias <john.kehayias@HIDDEN> Received: via spool by 53406-submit <at> debbugs.gnu.org id=B53406.16428706021175 (code B ref 53406); Sat, 22 Jan 2022 16:57:02 +0000 Received: (at 53406) by debbugs.gnu.org; 22 Jan 2022 16:56:42 +0000 Received: from localhost ([127.0.0.1]:37778 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nBJgw-0000It-2G for submit <at> debbugs.gnu.org; Sat, 22 Jan 2022 11:56:42 -0500 Received: from mail-4322.protonmail.ch ([185.70.43.22]:58847) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <john.kehayias@HIDDEN>) id 1nBJgu-0000Ia-Hu for 53406 <at> debbugs.gnu.org; Sat, 22 Jan 2022 11:56:41 -0500 Date: Sat, 22 Jan 2022 16:56:31 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=protonmail.com; s=protonmail2; t=1642870593; bh=+G+j4dIeOuyYJiuzXVv3A0g8L0AZ/lHSFxSKzy1cLTM=; h=Date:To:From:Reply-To:Subject:Message-ID:In-Reply-To:References: From:To:Cc; b=RHvNZvKstBPhpgBVS89BSBJVSX3MnhyTXM5nCxOgMKYdUCT/c4DEdifLENfHvwEMM A7rYirb5rPy8n+0gnLYSW5nPtCMJoAu/L2zM2Waj53GzUFgKLtML20ylbvjfFKnh61 f6Wyyhl4ctmyQVbccc0uhEq21Hb1Jqb1NImOdTU6/69++5ugFtmmhcURIq9P/oaegH nxr9+FcDnp8tVxL6Y8fwqWnWixPaapVcJ69DA2Cn4lByh7sAU5EXisGsrO3QXfJN1F OKGRU1uNsnCzWTzCo+aXXb6in/3u3GLu/2EddY63cWjlAFmO+xP1NwvYBAOh/VYXkZ 83Wg/U/vDAy4A== From: John Kehayias <john.kehayias@HIDDEN> Message-ID: <BYeMc6gGtnBoJyRsELEncbxb7IahCy3bBt_4jqcu7ElDUIP6rJ8JlCLQJCbWf_1rWk5EmUrCkJ1S-ktN91yxhJngftOzJSeMPRo2JpMxPag=@protonmail.com> In-Reply-To: <_yV8VwaAQw22nEoGIlm6a7oqlUMtT8nqReMHaxvyjLlwSqLgP5dkF0ro1t88lH9WtZt1jZv7zZXvlK2dkf46dSfbQnolV8IcbGcAl3vH8g4=@protonmail.com> References: <_yV8VwaAQw22nEoGIlm6a7oqlUMtT8nqReMHaxvyjLlwSqLgP5dkF0ro1t88lH9WtZt1jZv7zZXvlK2dkf46dSfbQnolV8IcbGcAl3vH8g4=@protonmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Status: No, score=-1.2 required=10.0 tests=ALL_TRUSTED,DKIM_SIGNED, DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,FREEMAIL_FROM shortcircuit=no autolearn=disabled version=3.4.4 X-Spam-Checker-Version: SpamAssassin 3.4.4 (2020-01-24) on mailout.protonmail.ch X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) I haven't had the chance to see what is happening inside union-build yet, b= ut did confirm that propagating expat/fixed instead of expat does not have = the same problem. I tried with (define fontconfig-fixed (package (inherit fontconfig) (propagated-inputs (modify-inputs (package-propagated-inputs fontconfig) (replace "expat" (@@ (gnu packages xml) expat/fixed)))))) and then (fhs-union (list fontconfig-fixed)) did not have any broken links = trying to go to the wrong version. Using this also works around my original= problem of a multi-arch union build having collisions (so that seems to st= em from whatever is happening here).
X-Loop: help-debbugs@HIDDEN Subject: bug#53406: union-build incorrectly handles grafts Resent-From: Ludovic =?UTF-8?Q?Court=C3=A8s?= <ludo@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: bug-guix@HIDDEN Resent-Date: Mon, 24 Jan 2022 14:19:02 +0000 Resent-Message-ID: <handler.53406.B53406.164303393422725 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: followup 53406 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: John Kehayias <john.kehayias@HIDDEN> Cc: 53406 <at> debbugs.gnu.org Received: via spool by 53406-submit <at> debbugs.gnu.org id=B53406.164303393422725 (code B ref 53406); Mon, 24 Jan 2022 14:19:02 +0000 Received: (at 53406) by debbugs.gnu.org; 24 Jan 2022 14:18:54 +0000 Received: from localhost ([127.0.0.1]:42663 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nC0BJ-0005uR-OO for submit <at> debbugs.gnu.org; Mon, 24 Jan 2022 09:18:54 -0500 Received: from hera.aquilenet.fr ([185.233.100.1]:49168) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <ludo@HIDDEN>) id 1nC0BH-0005uB-Ej for 53406 <at> debbugs.gnu.org; Mon, 24 Jan 2022 09:18:53 -0500 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id D2BEE2FE; Mon, 24 Jan 2022 15:18:44 +0100 (CET) X-Virus-Scanned: Debian amavisd-new at aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id Gtxcu_X0z0SL; Mon, 24 Jan 2022 15:18:43 +0100 (CET) Received: from ribbon (91-160-117-201.subs.proxad.net [91.160.117.201]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 5E6D78B; Mon, 24 Jan 2022 15:18:43 +0100 (CET) From: Ludovic =?UTF-8?Q?Court=C3=A8s?= <ludo@HIDDEN> References: <qb5FfnNru71KLpoam6DFtOq9W760IINWc1JT8EiB72076ZcVyxELMaZ5eNs_FySDi8W16xDWcw0hQkNG0wSs21T6XmrAkB-QNwG-RHzY3do=@protonmail.com> Date: Mon, 24 Jan 2022 15:18:42 +0100 In-Reply-To: <qb5FfnNru71KLpoam6DFtOq9W760IINWc1JT8EiB72076ZcVyxELMaZ5eNs_FySDi8W16xDWcw0hQkNG0wSs21T6XmrAkB-QNwG-RHzY3do=@protonmail.com> (John Kehayias's message of "Fri, 21 Jan 2022 06:48:38 +0000") Message-ID: <878rv5ushp.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spamd-Bar: / Authentication-Results: hera.aquilenet.fr; none X-Rspamd-Server: hera X-Rspamd-Queue-Id: D2BEE2FE X-Spamd-Result: default: False [-0.10 / 15.00]; ARC_NA(0.00)[]; RCVD_VIA_SMTP_AUTH(0.00)[]; FROM_HAS_DN(0.00)[]; TO_DN_SOME(0.00)[]; FREEMAIL_ENVRCPT(0.00)[protonmail.com]; TO_MATCH_ENVRCPT_ALL(0.00)[]; MIME_GOOD(-0.10)[text/plain]; RCPT_COUNT_TWO(0.00)[2]; FREEMAIL_TO(0.00)[protonmail.com]; FROM_EQ_ENVFROM(0.00)[]; MIME_TRACE(0.00)[0:+]; RCVD_COUNT_TWO(0.00)[2]; RCVD_TLS_ALL(0.00)[]; MID_RHS_MATCH_FROM(0.00)[] X-Spam-Score: 1.0 (+) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -0.0 (/) Hi, John Kehayias <john.kehayias@HIDDEN> skribis: > If I run the attached file with guix build -f graft-test.scm and look at = libexpat in the created package with, e.g. > > ls -la $(guix build -f graft-test.scm)/lib/libexpat* > > I get > > lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7= dwy2h55gs-fhs-union-0.0/lib/libexpat.la -> /gnu/store/2q8wwhd3prib0swky68rb= x9hl0xxs6hf-expat-2.4.3/lib/libexpat.la* > lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7= dwy2h55gs-fhs-union-0.0/lib/libexpat.so -> /gnu/store/2q8wwhd3prib0swky68rb= x9hl0xxs6hf-expat-2.4.3/lib/libexpat.so* > lrwxrwxrwx 1 root root 73 Dec 31 1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7= dwy2h55gs-fhs-union-0.0/lib/libexpat.so.1 -> /gnu/store/2q8wwhd3prib0swky68= rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1* > lrwxrwxrwx 1 root root 77 Dec 31 1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7= dwy2h55gs-fhs-union-0.0/lib/libexpat.so.1.8.1 -> /gnu/store/2q8wwhd3prib0sw= ky68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.1 > > Note that the last link is broken: looking at this expat library (2.4.3, = the replacement) it has > > -r-xr-xr-x 1 root root 961 Dec 31 1969 /gnu/store/2q8wwhd3prib0swky68rb= x9hl0xxs6hf-expat-2.4.3/lib/libexpat.la* > lrwxrwxrwx 1 root root 17 Dec 31 1969 /gnu/store/2q8wwhd3prib0swky68rb= x9hl0xxs6hf-expat-2.4.3/lib/libexpat.so -> libexpat.so.1.8.3* > lrwxrwxrwx 1 root root 17 Dec 31 1969 /gnu/store/2q8wwhd3prib0swky68rb= x9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1 -> libexpat.so.1.8.3* > -r-xr-xr-x 2 root root 191K Dec 31 1969 /gnu/store/2q8wwhd3prib0swky68rb= x9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.3* > > This is why the last link from the union-build package is broken, it trie= s to point to libexpat.so.1.8.1 (the previous version, but in the newer ver= sion's directory). Grafting is a pretty basic process: in this case it replaces occurrences of /gnu/store/=E2=80=A6-expat-2.4.1 with /gnu/store/=E2=80=A6-expat-2.4.3, = nothing more. It cannot guess that libexpat.so.1.8.1 was renamed to libexpat.so.1.8.3 or anything like that. Is it a problem? Normally no, because users of shared libraries don=E2=80= =99t refer to libraries by their fully-qualified name: --8<---------------cut here---------------start------------->8--- $ objdump -x $(guix build dbus-glib)/bin/dbus-binding-tool|grep NEED.*expat NEEDED libexpat.so.1 $ objdump -x $(guix build dbus-glib)/bin/dbus-binding-tool|grep RUNPATH RUNPATH /gnu/store/wwmxxlmlhwljn39z0gsj6iai3zk67a2g-dbus-gli= b-0.110/lib:/gnu/store/5s6iz5f777rh23q4kv8gvqrsyy61cbjh-dbus-1.12.20/lib:/g= nu/store/s0w7szfsajdy6cnrz2w7z4h5spyl4aaj-expat-2.4.1/lib:/gnu/store/2fk1gz= 2s7ppdicynscra9b19byrrr866-glibc-2.33/lib:/gnu/store/90lbavffg0csrf208nw0ay= j1bz5knl47-gcc-10.3.0-lib/lib:/gnu/store/qqs98rxwjrji6aaf6dqwp7q4m545g2sn-g= lib-2.70.0/lib:/gnu/store/90lbavffg0csrf208nw0ayj1bz5knl47-gcc-10.3.0-lib/l= ib/gcc/x86_64-unknown-linux-gnu/10.3.0/../../.. --8<---------------cut here---------------end--------------->8--- Likewise, =E2=80=98etc/ld.so.cache=E2=80=99 contains a reference to =E2=80= =98libexpat.so.1=E2=80=99, not to =E2=80=98libexpat.so.1.8.1=E2=80=99. Does that make sense? Or am I overlooking something? Thanks, Ludo=E2=80=99.
X-Loop: help-debbugs@HIDDEN Subject: bug#53406: union-build incorrectly handles grafts Resent-From: John Kehayias <john.kehayias@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: bug-guix@HIDDEN Resent-Date: Tue, 25 Jan 2022 03:24:02 +0000 Resent-Message-ID: <handler.53406.B53406.164308098317479 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: followup 53406 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: Ludovic =?UTF-8?Q?Court=C3=A8s?= <ludo@HIDDEN> Cc: 53406 <at> debbugs.gnu.org Reply-To: John Kehayias <john.kehayias@HIDDEN> Received: via spool by 53406-submit <at> debbugs.gnu.org id=B53406.164308098317479 (code B ref 53406); Tue, 25 Jan 2022 03:24:02 +0000 Received: (at 53406) by debbugs.gnu.org; 25 Jan 2022 03:23:03 +0000 Received: from localhost ([127.0.0.1]:46497 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nCCQ5-0004XC-Bg for submit <at> debbugs.gnu.org; Mon, 24 Jan 2022 22:23:03 -0500 Received: from mail-4322.protonmail.ch ([185.70.43.22]:26213) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <john.kehayias@HIDDEN>) id 1nCCQ0-0004Wx-Uo for 53406 <at> debbugs.gnu.org; Mon, 24 Jan 2022 22:22:56 -0500 Date: Tue, 25 Jan 2022 03:22:44 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=protonmail.com; s=protonmail2; t=1643080965; bh=c+cJuA84v9pAyxm9kRhFnVHPeWwsuW8axwE/pBTAvQA=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:From:To:Cc; b=xUTl/xsw/iUWwOFcK41ZgKMjgFbXEKxp002MnZ1j4fxrY0EQvYnJBwvGjktw+ESVC ac519uRmfEBC1yedKY/yKEETFXNbLQsSm+oj899hl+YcftmvJZjjUIiOhoqxRrkZnO HKVrIwvQoa3XqJRotO5q0ETwxYGo2SC5AoRUdcukTNmLsYZlRRMfZWxV9/jijFI3JA GU0/LVSAdi2jgz/OZWgzKFObofULFnSMUBzm4sTrvcseTvY6XOp0NIiWCaU0FhKhE+ pr8lt3uSQsxAAMsDjdjFfa3T1k1VhbRoFywXlSMx39jJWCMjbkwPrucin3QETRdqQ8 BR111jrwuWPGA== From: John Kehayias <john.kehayias@HIDDEN> Message-ID: <tJNGA4veM58kh6qICZ8iQbbn0ygA7e2p04ebczPbuFjiYeYTaOsgVXEOKQVK2PQHwYbS7OPekQZV5DvcvmDyAoeaP4sO3La7gjNjIKCEsnM=@protonmail.com> In-Reply-To: <878rv5ushp.fsf@HIDDEN> References: <qb5FfnNru71KLpoam6DFtOq9W760IINWc1JT8EiB72076ZcVyxELMaZ5eNs_FySDi8W16xDWcw0hQkNG0wSs21T6XmrAkB-QNwG-RHzY3do=@protonmail.com> <878rv5ushp.fsf@HIDDEN> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="b1_hzGkhNMlchRq0mtQZRmqN67CjV1Rly5LI1bLHcO4d84" X-Spam-Status: No, score=-1.2 required=10.0 tests=ALL_TRUSTED,DKIM_SIGNED, DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,FREEMAIL_FROM shortcircuit=no autolearn=disabled version=3.4.4 X-Spam-Checker-Version: SpamAssassin 3.4.4 (2020-01-24) on mailout.protonmail.ch X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -1.0 (-) This is a multi-part message in MIME format. --b1_hzGkhNMlchRq0mtQZRmqN67CjV1Rly5LI1bLHcO4d84 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Hi Ludo=E2=80=99, Thanks for explaining! =E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90 Original Me= ssage =E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90 On Monday, January 24th, 2022 at 9:18 AM, Ludovic Court=C3=A8s wrote: > > Grafting is a pretty basic process: in this case it replaces occurrences > of /gnu/store/=E2=80=A6-expat-2.4.1 with /gnu/store/=E2=80=A6-expat-2.4.3= , nothing more. > It cannot guess that libexpat.so.1.8.1 was renamed to libexpat.so.1.8.3 > or anything like that. > > Is it a problem? Normally no, because users of shared libraries don= =E2=80=99t > refer to libraries by their fully-qualified name: > > --8<---------------cut here---------------start------------->8--- > $ objdump -x $(guix build dbus-glib)/bin/dbus-binding-tool|grep NEED.*exp= at > NEEDED libexpat.so.1 > $ objdump -x $(guix build dbus-glib)/bin/dbus-binding-tool|grep RUNPATH > RUNPATH /gnu/store/wwmxxlmlhwljn39z0gsj6iai3zk67a2g-dbus-glib-0.110/lib:/= gnu/store/5s6iz5f777rh23q4kv8gvqrsyy61cbjh-dbus-1.12.20/lib:/gnu/store/s0w7= szfsajdy6cnrz2w7z4h5spyl4aaj-expat-2.4.1/lib:/gnu/store/2fk1gz2s7ppdicynscr= a9b19byrrr866-glibc-2.33/lib:/gnu/store/90lbavffg0csrf208nw0ayj1bz5knl47-gc= c-10.3.0-lib/lib:/gnu/store/qqs98rxwjrji6aaf6dqwp7q4m545g2sn-glib-2.70.0/li= b:/gnu/store/90lbavffg0csrf208nw0ayj1bz5knl47-gcc-10.3.0-lib/lib/gcc/x86_64= -unknown-linux-gnu/10.3.0/../../.. > --8<---------------cut here---------------end--------------->8--- > > Likewise, =E2=80=98etc/ld.so.cache=E2=80=99 contains a reference to = =E2=80=98libexpat.so.1=E2=80=99, not > to =E2=80=98libexpat.so.1.8.1=E2=80=99. > (Your example output was not of a grafted libexpat in the RUNPATH, but poin= t taken; I see the newer expat version on my (grafted) dbus-glib). > Does that make sense? Or am I overlooking something? > Yes, that makes sense, thank you for clarifying. So this is the currently e= xpected behavior. Ideally grafting would be smarter to maybe avoid this (mi= ssing changes in e.g. version number)? But I would guess this is not someth= ing that would be expected to cause a problem for the vast majority of case= s, as you explain, and adds complexity to the process. I'm glad to hear it all works! But... Perhaps I was too hasty in noting this "problem" which like I said was not = the error I originally encountered. I was using a package that constructs b= oth the 64- and 32-bit libraries to put in a container (say, a /lib32 and /= lib64 or something similar to an FHS environment). A collision was happenin= g between a file and directory, one being a good symlink and the other brok= en, rather than a "real" mismatch in file vs directory. Anyway, going back = to that what I see is that one link is broken for the above reasons, but th= e good one is good because it is to the *ungrafted* library store path. I d= on't know now if these 2 things are connected other than one led me to the = other, but I turn now to what demonstrates my original problem. I don't know why this happens or if it is something in this building proces= s that is not correct, but I did come up with a minimal example (attached).= The code is a bit odd in its stripped down form, though hopefully is clear= in what way this would be used to do something useful (again, like an FHS = environment or other container). Apologies for the old style and lack of ge= xps which I'm finally getting used to. The example package just tries to ma= ke a dummy package that has, for illustration, a "/lib64" and "/lib32" whic= h link to the respective union-build inputs (of a single library for simpli= city). I don't think the actual package being made matters so much, or how = it is constructed, but that two inputs are union-builds of the same library= (x86_64 and i686) which should have a graft of expat. Just my guess though= . Doing: ls -la $(guix build -f graft-test.scm)/lib64/lib/libexpat* lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk= ji6i978-test-pkg-0.0/lib64/lib/libexpat.la -> /gnu/store/2q8wwhd3prib0swky6= 8rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.la* lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk= ji6i978-test-pkg-0.0/lib64/lib/libexpat.so -> /gnu/store/2q8wwhd3prib0swky6= 8rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so* lrwxrwxrwx 1 root root 73 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk= ji6i978-test-pkg-0.0/lib64/lib/libexpat.so.1 -> /gnu/store/2q8wwhd3prib0swk= y68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1* lrwxrwxrwx 1 root root 77 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk= ji6i978-test-pkg-0.0/lib64/lib/libexpat.so.1.8.1 -> /gnu/store/2q8wwhd3prib= 0swky68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.1 is what we saw already: libexpat is the newer (replacement, 2.4.3) version,= with the full version symlink broken since the version number is wrong. Li= kewise in other pieces that have the version number, like share/doc. Okay, = that's expected. But now, in the i686-linux union-build input: ls -la $(guix build -f graft-test.scm)/lib32/lib/libexpat* lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk= ji6i978-test-pkg-0.0/lib32/lib/libexpat.la -> /gnu/store/b0jns3vzhhpna7lim8= bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.la* lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk= ji6i978-test-pkg-0.0/lib32/lib/libexpat.so -> /gnu/store/b0jns3vzhhpna7lim8= bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so* lrwxrwxrwx 1 root root 73 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk= ji6i978-test-pkg-0.0/lib32/lib/libexpat.so.1 -> /gnu/store/b0jns3vzhhpna7li= m8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so.1* lrwxrwxrwx 1 root root 77 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk= ji6i978-test-pkg-0.0/lib32/lib/libexpat.so.1.8.1 -> /gnu/store/b0jns3vzhhpn= a7lim8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so.1.8.1* all the links are good and to the original (version 2.4.1) expat. In other = words, the constructed union64 and union32 inputs (in the sample code) do n= ot both get grafted, even though doing just the fhs-union command on it's o= wn (not building both for another package) does graft for either architectu= re. At least that seems like the most obvious difference between the earlie= r example and this new one. Why? Does the grafting just happen "once" somehow and misses the "same" inp= ut again (but built for different system)? Is this expected or just a weird= /wrong way to do this kind of build which is causing this? I'm not sure if = this is just with union-build or if it would happen just with inputs of the= same library but different architectures. I didn't know how to do that qui= ckly off hand, so I haven't tried it yet. Thanks for taking the time to look and explain, much appreciated! John --b1_hzGkhNMlchRq0mtQZRmqN67CjV1Rly5LI1bLHcO4d84 Content-Type: text/x-scheme; name=graft-test.scm Content-Transfer-Encoding: base64 Content-Disposition: attachment; filename=graft-test.scm Ozs7IEdOVSBHdWl4IC0tLSBGdW5jdGlvbmFsIHBhY2thZ2UgbWFuYWdlbWVudCBmb3IgR05VCjs7 OyBDb3B5cmlnaHQgwqkgMjAyMCBwa2lsbC05Cjs7OyBDb3B5cmlnaHQgwqkgMjAyMCwgMjAyMSBp c29uIDxpc29uQGFpcm1haWwuY2M+Cjs7OyBDb3B5cmlnaHQgwqkgMjAyMSBwaW5lYXBwbGVzCjs7 OyBDb3B5cmlnaHQgwqkgMjAyMSBKZWFuLUJhcHRpc3RlIFZvbGF0aWVyIDxqYnZAcG0ubWU+Cjs7 OyBDb3B5cmlnaHQgwqkgMjAyMSBLb3pvIDxrb3pvZGV2QHJ1bmJveC5jb20+Cjs7OyBDb3B5cmln aHQgwqkgMjAyMSBKb2huIEtlaGF5aWFzIDxqb2huLmtlaGF5aWFzQHByb3Rvbm1haWwuY29tPgo7 OzsKOzs7IFRoaXMgZmlsZSBpcyBub3QgcGFydCBvZiBHTlUgR3VpeC4KOzs7Cjs7OyBHTlUgR3Vp eCBpcyBmcmVlIHNvZnR3YXJlOyB5b3UgY2FuIHJlZGlzdHJpYnV0ZSBpdCBhbmQvb3IgbW9kaWZ5 IGl0Cjs7OyB1bmRlciB0aGUgdGVybXMgb2YgdGhlIEdOVSBHZW5lcmFsIFB1YmxpYyBMaWNlbnNl IGFzIHB1Ymxpc2hlZCBieQo7OzsgdGhlIEZyZWUgU29mdHdhcmUgRm91bmRhdGlvbjsgZWl0aGVy 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X-Loop: help-debbugs@HIDDEN Subject: bug#53406: union-build incorrectly handles grafts Resent-From: Ludovic =?UTF-8?Q?Court=C3=A8s?= <ludo@HIDDEN> Original-Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> Resent-CC: bug-guix@HIDDEN Resent-Date: Tue, 25 Jan 2022 13:48:02 +0000 Resent-Message-ID: <handler.53406.B53406.164311847322265 <at> debbugs.gnu.org> Resent-Sender: help-debbugs@HIDDEN X-GNU-PR-Message: followup 53406 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: John Kehayias <john.kehayias@HIDDEN> Cc: 53406 <at> debbugs.gnu.org Received: via spool by 53406-submit <at> debbugs.gnu.org id=B53406.164311847322265 (code B ref 53406); Tue, 25 Jan 2022 13:48:02 +0000 Received: (at 53406) by debbugs.gnu.org; 25 Jan 2022 13:47:53 +0000 Received: from localhost ([127.0.0.1]:47469 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <debbugs-submit-bounces <at> debbugs.gnu.org>) id 1nCMAr-0005n2-8X for submit <at> debbugs.gnu.org; Tue, 25 Jan 2022 08:47:53 -0500 Received: from hera.aquilenet.fr ([185.233.100.1]:56364) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from <ludo@HIDDEN>) id 1nCMAo-0005m6-Df for 53406 <at> debbugs.gnu.org; Tue, 25 Jan 2022 08:47:51 -0500 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id E66BB1E8; Tue, 25 Jan 2022 14:47:43 +0100 (CET) X-Virus-Scanned: Debian amavisd-new at aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id WZnu94PIBy87; Tue, 25 Jan 2022 14:47:42 +0100 (CET) Received: from ribbon (91-160-117-201.subs.proxad.net [91.160.117.201]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 313D78B; Tue, 25 Jan 2022 14:47:42 +0100 (CET) From: Ludovic =?UTF-8?Q?Court=C3=A8s?= <ludo@HIDDEN> References: <qb5FfnNru71KLpoam6DFtOq9W760IINWc1JT8EiB72076ZcVyxELMaZ5eNs_FySDi8W16xDWcw0hQkNG0wSs21T6XmrAkB-QNwG-RHzY3do=@protonmail.com> <878rv5ushp.fsf@HIDDEN> <tJNGA4veM58kh6qICZ8iQbbn0ygA7e2p04ebczPbuFjiYeYTaOsgVXEOKQVK2PQHwYbS7OPekQZV5DvcvmDyAoeaP4sO3La7gjNjIKCEsnM=@protonmail.com> X-URL: http://www.fdn.fr/~lcourtes/ X-Revolutionary-Date: 6 =?UTF-8?Q?Pluvi=C3=B4se?= an 230 de la =?UTF-8?Q?R=C3=A9volution?= X-PGP-Key-ID: 0x090B11993D9AEBB5 X-PGP-Key: http://www.fdn.fr/~lcourtes/ludovic.asc X-PGP-Fingerprint: 3CE4 6455 8A84 FDC6 9DB4 0CFB 090B 1199 3D9A EBB5 X-OS: x86_64-pc-linux-gnu Date: Tue, 25 Jan 2022 14:47:41 +0100 In-Reply-To: <tJNGA4veM58kh6qICZ8iQbbn0ygA7e2p04ebczPbuFjiYeYTaOsgVXEOKQVK2PQHwYbS7OPekQZV5DvcvmDyAoeaP4sO3La7gjNjIKCEsnM=@protonmail.com> (John Kehayias's message of "Tue, 25 Jan 2022 03:22:44 +0000") Message-ID: <87bl00lyf6.fsf@HIDDEN> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spamd-Bar: / Authentication-Results: hera.aquilenet.fr; none X-Rspamd-Server: hera X-Rspamd-Queue-Id: E66BB1E8 X-Spamd-Result: default: False [-0.10 / 15.00]; ARC_NA(0.00)[]; RCVD_VIA_SMTP_AUTH(0.00)[]; FROM_HAS_DN(0.00)[]; TO_DN_SOME(0.00)[]; FREEMAIL_ENVRCPT(0.00)[protonmail.com]; TO_MATCH_ENVRCPT_ALL(0.00)[]; MIME_GOOD(-0.10)[text/plain]; RCPT_COUNT_TWO(0.00)[2]; FREEMAIL_TO(0.00)[protonmail.com]; FROM_EQ_ENVFROM(0.00)[]; MIME_TRACE(0.00)[0:+]; RCVD_COUNT_TWO(0.00)[2]; RCVD_TLS_ALL(0.00)[]; MID_RHS_MATCH_FROM(0.00)[] X-Spam-Score: 1.0 (+) X-BeenThere: debbugs-submit <at> debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: <debbugs-submit.debbugs.gnu.org> List-Unsubscribe: <https://debbugs.gnu.org/cgi-bin/mailman/options/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=unsubscribe> List-Archive: <https://debbugs.gnu.org/cgi-bin/mailman/private/debbugs-submit/> List-Post: <mailto:debbugs-submit <at> debbugs.gnu.org> List-Help: <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=help> List-Subscribe: <https://debbugs.gnu.org/cgi-bin/mailman/listinfo/debbugs-submit>, <mailto:debbugs-submit-request <at> debbugs.gnu.org?subject=subscribe> Errors-To: debbugs-submit-bounces <at> debbugs.gnu.org Sender: "Debbugs-submit" <debbugs-submit-bounces <at> debbugs.gnu.org> X-Spam-Score: -0.0 (/) Hi John, John Kehayias <john.kehayias@HIDDEN> skribis: > Yes, that makes sense, thank you for clarifying. So this is the currently= expected behavior. Ideally grafting would be smarter to maybe avoid this (= missing changes in e.g. version number)? But I would guess this is not some= thing that would be expected to cause a problem for the vast majority of ca= ses, as you explain, and adds complexity to the process. I don=E2=80=99t think it can be smarter; grafting is just text substitution= , it knows nothing about the files it=E2=80=99s fiddling with (with the exceptio= n of debugging sections in ELF files). > Perhaps I was too hasty in noting this "problem" which like I said was no= t the error I originally encountered. I was using a package that constructs= both the 64- and 32-bit libraries to put in a container (say, a /lib32 and= /lib64 or something similar to an FHS environment). A collision was happen= ing between a file and directory, one being a good symlink and the other br= oken, rather than a "real" mismatch in file vs directory. Anyway, going bac= k to that what I see is that one link is broken for the above reasons, but = the good one is good because it is to the *ungrafted* library store path. I= don't know now if these 2 things are connected other than one led me to th= e other, but I turn now to what demonstrates my original problem. > > I don't know why this happens or if it is something in this building proc= ess that is not correct, but I did come up with a minimal example (attached= ). The code is a bit odd in its stripped down form, though hopefully is cle= ar in what way this would be used to do something useful (again, like an FH= S environment or other container). Apologies for the old style and lack of = gexps which I'm finally getting used to. The example package just tries to = make a dummy package that has, for illustration, a "/lib64" and "/lib32" wh= ich link to the respective union-build inputs (of a single library for simp= licity). I don't think the actual package being made matters so much, or ho= w it is constructed, but that two inputs are union-builds of the same libra= ry (x86_64 and i686) which should have a graft of expat. Just my guess thou= gh. > > Doing: > > ls -la $(guix build -f graft-test.scm)/lib64/lib/libexpat* > lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3= jkji6i978-test-pkg-0.0/lib64/lib/libexpat.la -> /gnu/store/2q8wwhd3prib0swk= y68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.la* > lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3= jkji6i978-test-pkg-0.0/lib64/lib/libexpat.so -> /gnu/store/2q8wwhd3prib0swk= y68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so* > lrwxrwxrwx 1 root root 73 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3= jkji6i978-test-pkg-0.0/lib64/lib/libexpat.so.1 -> /gnu/store/2q8wwhd3prib0s= wky68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1* > lrwxrwxrwx 1 root root 77 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3= jkji6i978-test-pkg-0.0/lib64/lib/libexpat.so.1.8.1 -> /gnu/store/2q8wwhd3pr= ib0swky68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.1 > > is what we saw already: libexpat is the newer (replacement, 2.4.3) versio= n, with the full version symlink broken since the version number is wrong. = Likewise in other pieces that have the version number, like share/doc. Okay= , that's expected. But now, in the i686-linux union-build input: > > ls -la $(guix build -f graft-test.scm)/lib32/lib/libexpat* > lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3= jkji6i978-test-pkg-0.0/lib32/lib/libexpat.la -> /gnu/store/b0jns3vzhhpna7li= m8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.la* > lrwxrwxrwx 1 root root 71 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3= jkji6i978-test-pkg-0.0/lib32/lib/libexpat.so -> /gnu/store/b0jns3vzhhpna7li= m8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so* > lrwxrwxrwx 1 root root 73 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3= jkji6i978-test-pkg-0.0/lib32/lib/libexpat.so.1 -> /gnu/store/b0jns3vzhhpna7= lim8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so.1* > lrwxrwxrwx 1 root root 77 Dec 31 1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3= jkji6i978-test-pkg-0.0/lib32/lib/libexpat.so.1.8.1 -> /gnu/store/b0jns3vzhh= pna7lim8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so.1.8.1* > > all the links are good and to the original (version 2.4.1) expat. In othe= r words, the constructed union64 and union32 inputs (in the sample code) do= not both get grafted, even though doing just the fhs-union command on it's= own (not building both for another package) does graft for either architec= ture. At least that seems like the most obvious difference between the earl= ier example and this new one. > > Why? Does the grafting just happen "once" somehow and misses the "same" i= nput again (but built for different system)? Is this expected or just a wei= rd/wrong way to do this kind of build which is causing this? I'm not sure i= f this is just with union-build or if it would happen just with inputs of t= he same library but different architectures. I didn't know how to do that q= uickly off hand, so I haven't tried it yet. Woow, it=E2=80=99s a sophisticated example. :-) I don=E2=80=99t actually have the Expat replacement we=E2=80=99re talking a= bout so I can=E2=80=99t easily test. At first sight I=E2=80=99d say it should work (both lib32 and lib64 should = refer to the Expat replacement), but it could be that something somewhere assumes all the packages are built for the system. That would need more investigation work in (guix packages) in (guix grafts). Thanks, Ludo=E2=80=99.
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