GNU bug report logs - #53406
"grafts fail with different architecture inputs?"

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Package: guix; Reported by: John Kehayias <john.kehayias@HIDDEN>; dated Fri, 21 Jan 2022 06:50:02 UTC; Maintainer for guix is bug-guix@HIDDEN.

Changed bug title to '"grafts fail with different architecture inputs?"' from 'union-build incorrectly handles grafts' Request was from John Kehayias <john.kehayias@HIDDEN> to control <at> debbugs.gnu.org. Full text available.

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From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN>
To: John Kehayias <john.kehayias@HIDDEN>
Subject: Re: bug#53406: union-build incorrectly handles grafts
References: <qb5FfnNru71KLpoam6DFtOq9W760IINWc1JT8EiB72076ZcVyxELMaZ5eNs_FySDi8W16xDWcw0hQkNG0wSs21T6XmrAkB-QNwG-RHzY3do=@protonmail.com>
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Hi John,

John Kehayias <john.kehayias@HIDDEN> skribis:

> Yes, that makes sense, thank you for clarifying. So this is the currently=
 expected behavior. Ideally grafting would be smarter to maybe avoid this (=
missing changes in e.g. version number)? But I would guess this is not some=
thing that would be expected to cause a problem for the vast majority of ca=
ses, as you explain, and adds complexity to the process.

I don=E2=80=99t think it can be smarter; grafting is just text substitution=
, it
knows nothing about the files it=E2=80=99s fiddling with (with the exceptio=
n of
debugging sections in ELF files).

> Perhaps I was too hasty in noting this "problem" which like I said was no=
t the error I originally encountered. I was using a package that constructs=
 both the 64- and 32-bit libraries to put in a container (say, a /lib32 and=
 /lib64 or something similar to an FHS environment). A collision was happen=
ing between a file and directory, one being a good symlink and the other br=
oken, rather than a "real" mismatch in file vs directory. Anyway, going bac=
k to that what I see is that one link is broken for the above reasons, but =
the good one is good because it is to the *ungrafted* library store path. I=
 don't know now if these 2 things are connected other than one led me to th=
e other, but I turn now to what demonstrates my original problem.
>
> I don't know why this happens or if it is something in this building proc=
ess that is not correct, but I did come up with a minimal example (attached=
). The code is a bit odd in its stripped down form, though hopefully is cle=
ar in what way this would be used to do something useful (again, like an FH=
S environment or other container). Apologies for the old style and lack of =
gexps which I'm finally getting used to. The example package just tries to =
make a dummy package that has, for illustration, a "/lib64" and "/lib32" wh=
ich link to the respective union-build inputs (of a single library for simp=
licity). I don't think the actual package being made matters so much, or ho=
w it is constructed, but that two inputs are union-builds of the same libra=
ry (x86_64 and i686) which should have a graft of expat. Just my guess thou=
gh.
>
> Doing:
>
> ls -la $(guix build -f graft-test.scm)/lib64/lib/libexpat*
> lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3=
jkji6i978-test-pkg-0.0/lib64/lib/libexpat.la -> /gnu/store/2q8wwhd3prib0swk=
y68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.la*
> lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3=
jkji6i978-test-pkg-0.0/lib64/lib/libexpat.so -> /gnu/store/2q8wwhd3prib0swk=
y68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so*
> lrwxrwxrwx 1 root root 73 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3=
jkji6i978-test-pkg-0.0/lib64/lib/libexpat.so.1 -> /gnu/store/2q8wwhd3prib0s=
wky68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1*
> lrwxrwxrwx 1 root root 77 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3=
jkji6i978-test-pkg-0.0/lib64/lib/libexpat.so.1.8.1 -> /gnu/store/2q8wwhd3pr=
ib0swky68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.1
>
> is what we saw already: libexpat is the newer (replacement, 2.4.3) versio=
n, with the full version symlink broken since the version number is wrong. =
Likewise in other pieces that have the version number, like share/doc. Okay=
, that's expected. But now, in the i686-linux union-build input:
>
> ls -la $(guix build -f graft-test.scm)/lib32/lib/libexpat*
> lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3=
jkji6i978-test-pkg-0.0/lib32/lib/libexpat.la -> /gnu/store/b0jns3vzhhpna7li=
m8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.la*
> lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3=
jkji6i978-test-pkg-0.0/lib32/lib/libexpat.so -> /gnu/store/b0jns3vzhhpna7li=
m8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so*
> lrwxrwxrwx 1 root root 73 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3=
jkji6i978-test-pkg-0.0/lib32/lib/libexpat.so.1 -> /gnu/store/b0jns3vzhhpna7=
lim8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so.1*
> lrwxrwxrwx 1 root root 77 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3=
jkji6i978-test-pkg-0.0/lib32/lib/libexpat.so.1.8.1 -> /gnu/store/b0jns3vzhh=
pna7lim8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so.1.8.1*
>
> all the links are good and to the original (version 2.4.1) expat. In othe=
r words, the constructed union64 and union32 inputs (in the sample code) do=
 not both get grafted, even though doing just the fhs-union command on it's=
 own (not building both for another package) does graft for either architec=
ture. At least that seems like the most obvious difference between the earl=
ier example and this new one.
>
> Why? Does the grafting just happen "once" somehow and misses the "same" i=
nput again (but built for different system)? Is this expected or just a wei=
rd/wrong way to do this kind of build which is causing this? I'm not sure i=
f this is just with union-build or if it would happen just with inputs of t=
he same library but different architectures. I didn't know how to do that q=
uickly off hand, so I haven't tried it yet.

Woow, it=E2=80=99s a sophisticated example.  :-)

I don=E2=80=99t actually have the Expat replacement we=E2=80=99re talking a=
bout so I
can=E2=80=99t easily test.

At first sight I=E2=80=99d say it should work (both lib32 and lib64 should =
refer
to the Expat replacement), but it could be that something somewhere
assumes all the packages are built for the system.  That would need more
investigation work in (guix packages) in (guix grafts).

Thanks,
Ludo=E2=80=99.

Information forwarded to bug-guix@HIDDEN:
bug#53406; Package guix. Full text available.

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To: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN>
From: John Kehayias <john.kehayias@HIDDEN>
Subject: Re: bug#53406: union-build incorrectly handles grafts
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Hi Ludo=E2=80=99,

Thanks for explaining!

=E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90 Original Me=
ssage =E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90=E2=80=90

On Monday, January 24th, 2022 at 9:18 AM, Ludovic Court=C3=A8s wrote:

>
> Grafting is a pretty basic process: in this case it replaces occurrences
> of /gnu/store/=E2=80=A6-expat-2.4.1 with /gnu/store/=E2=80=A6-expat-2.4.3=
, nothing more.
> It cannot guess that libexpat.so.1.8.1 was renamed to libexpat.so.1.8.3
> or anything like that.
>
> Is it a problem? Normally no, because users of shared libraries don=
=E2=80=99t
> refer to libraries by their fully-qualified name:
>
> --8<---------------cut here---------------start------------->8---
> $ objdump -x $(guix build dbus-glib)/bin/dbus-binding-tool|grep NEED.*exp=
at
> NEEDED libexpat.so.1
> $ objdump -x $(guix build dbus-glib)/bin/dbus-binding-tool|grep RUNPATH
> RUNPATH /gnu/store/wwmxxlmlhwljn39z0gsj6iai3zk67a2g-dbus-glib-0.110/lib:/=
gnu/store/5s6iz5f777rh23q4kv8gvqrsyy61cbjh-dbus-1.12.20/lib:/gnu/store/s0w7=
szfsajdy6cnrz2w7z4h5spyl4aaj-expat-2.4.1/lib:/gnu/store/2fk1gz2s7ppdicynscr=
a9b19byrrr866-glibc-2.33/lib:/gnu/store/90lbavffg0csrf208nw0ayj1bz5knl47-gc=
c-10.3.0-lib/lib:/gnu/store/qqs98rxwjrji6aaf6dqwp7q4m545g2sn-glib-2.70.0/li=
b:/gnu/store/90lbavffg0csrf208nw0ayj1bz5knl47-gcc-10.3.0-lib/lib/gcc/x86_64=
-unknown-linux-gnu/10.3.0/../../..
> --8<---------------cut here---------------end--------------->8---
>
> Likewise, =E2=80=98etc/ld.so.cache=E2=80=99 contains a reference to =
=E2=80=98libexpat.so.1=E2=80=99, not
> to =E2=80=98libexpat.so.1.8.1=E2=80=99.
>

(Your example output was not of a grafted libexpat in the RUNPATH, but poin=
t taken; I see the newer expat version on my (grafted) dbus-glib).

> Does that make sense? Or am I overlooking something?
>

Yes, that makes sense, thank you for clarifying. So this is the currently e=
xpected behavior. Ideally grafting would be smarter to maybe avoid this (mi=
ssing changes in e.g. version number)? But I would guess this is not someth=
ing that would be expected to cause a problem for the vast majority of case=
s, as you explain, and adds complexity to the process.

I'm glad to hear it all works! But...

Perhaps I was too hasty in noting this "problem" which like I said was not =
the error I originally encountered. I was using a package that constructs b=
oth the 64- and 32-bit libraries to put in a container (say, a /lib32 and /=
lib64 or something similar to an FHS environment). A collision was happenin=
g between a file and directory, one being a good symlink and the other brok=
en, rather than a "real" mismatch in file vs directory. Anyway, going back =
to that what I see is that one link is broken for the above reasons, but th=
e good one is good because it is to the *ungrafted* library store path. I d=
on't know now if these 2 things are connected other than one led me to the =
other, but I turn now to what demonstrates my original problem.

I don't know why this happens or if it is something in this building proces=
s that is not correct, but I did come up with a minimal example (attached).=
 The code is a bit odd in its stripped down form, though hopefully is clear=
 in what way this would be used to do something useful (again, like an FHS =
environment or other container). Apologies for the old style and lack of ge=
xps which I'm finally getting used to. The example package just tries to ma=
ke a dummy package that has, for illustration, a "/lib64" and "/lib32" whic=
h link to the respective union-build inputs (of a single library for simpli=
city). I don't think the actual package being made matters so much, or how =
it is constructed, but that two inputs are union-builds of the same library=
 (x86_64 and i686) which should have a graft of expat. Just my guess though=
.

Doing:

ls -la $(guix build -f graft-test.scm)/lib64/lib/libexpat*
lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk=
ji6i978-test-pkg-0.0/lib64/lib/libexpat.la -> /gnu/store/2q8wwhd3prib0swky6=
8rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.la*
lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk=
ji6i978-test-pkg-0.0/lib64/lib/libexpat.so -> /gnu/store/2q8wwhd3prib0swky6=
8rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so*
lrwxrwxrwx 1 root root 73 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk=
ji6i978-test-pkg-0.0/lib64/lib/libexpat.so.1 -> /gnu/store/2q8wwhd3prib0swk=
y68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1*
lrwxrwxrwx 1 root root 77 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk=
ji6i978-test-pkg-0.0/lib64/lib/libexpat.so.1.8.1 -> /gnu/store/2q8wwhd3prib=
0swky68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.1

is what we saw already: libexpat is the newer (replacement, 2.4.3) version,=
 with the full version symlink broken since the version number is wrong. Li=
kewise in other pieces that have the version number, like share/doc. Okay, =
that's expected. But now, in the i686-linux union-build input:

ls -la $(guix build -f graft-test.scm)/lib32/lib/libexpat*
lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk=
ji6i978-test-pkg-0.0/lib32/lib/libexpat.la -> /gnu/store/b0jns3vzhhpna7lim8=
bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.la*
lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk=
ji6i978-test-pkg-0.0/lib32/lib/libexpat.so -> /gnu/store/b0jns3vzhhpna7lim8=
bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so*
lrwxrwxrwx 1 root root 73 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk=
ji6i978-test-pkg-0.0/lib32/lib/libexpat.so.1 -> /gnu/store/b0jns3vzhhpna7li=
m8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so.1*
lrwxrwxrwx 1 root root 77 Dec 31  1969 /gnu/store/qbh16hfdv8pnfw01k6izbs3jk=
ji6i978-test-pkg-0.0/lib32/lib/libexpat.so.1.8.1 -> /gnu/store/b0jns3vzhhpn=
a7lim8bc3dr0payzx5yy-expat-2.4.1/lib/libexpat.so.1.8.1*

all the links are good and to the original (version 2.4.1) expat. In other =
words, the constructed union64 and union32 inputs (in the sample code) do n=
ot both get grafted, even though doing just the fhs-union command on it's o=
wn (not building both for another package) does graft for either architectu=
re. At least that seems like the most obvious difference between the earlie=
r example and this new one.

Why? Does the grafting just happen "once" somehow and misses the "same" inp=
ut again (but built for different system)? Is this expected or just a weird=
/wrong way to do this kind of build which is causing this? I'm not sure if =
this is just with union-build or if it would happen just with inputs of the=
 same library but different architectures. I didn't know how to do that qui=
ckly off hand, so I haven't tried it yet.

Thanks for taking the time to look and explain, much appreciated!

John
--b1_hzGkhNMlchRq0mtQZRmqN67CjV1Rly5LI1bLHcO4d84
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--b1_hzGkhNMlchRq0mtQZRmqN67CjV1Rly5LI1bLHcO4d84--

Information forwarded to bug-guix@HIDDEN:
bug#53406; Package guix. Full text available.

Message received at 53406 <at> debbugs.gnu.org:

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From: =?utf-8?Q?Ludovic_Court=C3=A8s?= <ludo@HIDDEN>
To: John Kehayias <john.kehayias@HIDDEN>
Subject: Re: bug#53406: union-build incorrectly handles grafts
References: <qb5FfnNru71KLpoam6DFtOq9W760IINWc1JT8EiB72076ZcVyxELMaZ5eNs_FySDi8W16xDWcw0hQkNG0wSs21T6XmrAkB-QNwG-RHzY3do=@protonmail.com>
Date: Mon, 24 Jan 2022 15:18:42 +0100
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 (John Kehayias's message of "Fri, 21 Jan 2022 06:48:38 +0000")
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Hi,

John Kehayias <john.kehayias@HIDDEN> skribis:

> If I run the attached file with guix build -f graft-test.scm and look at =
libexpat in the created package with, e.g.
>
> ls -la $(guix build -f graft-test.scm)/lib/libexpat*
>
> I get
>
> lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7=
dwy2h55gs-fhs-union-0.0/lib/libexpat.la -> /gnu/store/2q8wwhd3prib0swky68rb=
x9hl0xxs6hf-expat-2.4.3/lib/libexpat.la*
> lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7=
dwy2h55gs-fhs-union-0.0/lib/libexpat.so -> /gnu/store/2q8wwhd3prib0swky68rb=
x9hl0xxs6hf-expat-2.4.3/lib/libexpat.so*
> lrwxrwxrwx 1 root root 73 Dec 31  1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7=
dwy2h55gs-fhs-union-0.0/lib/libexpat.so.1 -> /gnu/store/2q8wwhd3prib0swky68=
rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1*
> lrwxrwxrwx 1 root root 77 Dec 31  1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7=
dwy2h55gs-fhs-union-0.0/lib/libexpat.so.1.8.1 -> /gnu/store/2q8wwhd3prib0sw=
ky68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.1
>
> Note that the last link is broken: looking at this expat library (2.4.3, =
the replacement) it has
>
> -r-xr-xr-x 1 root root  961 Dec 31  1969 /gnu/store/2q8wwhd3prib0swky68rb=
x9hl0xxs6hf-expat-2.4.3/lib/libexpat.la*
> lrwxrwxrwx 1 root root   17 Dec 31  1969 /gnu/store/2q8wwhd3prib0swky68rb=
x9hl0xxs6hf-expat-2.4.3/lib/libexpat.so -> libexpat.so.1.8.3*
> lrwxrwxrwx 1 root root   17 Dec 31  1969 /gnu/store/2q8wwhd3prib0swky68rb=
x9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1 -> libexpat.so.1.8.3*
> -r-xr-xr-x 2 root root 191K Dec 31  1969 /gnu/store/2q8wwhd3prib0swky68rb=
x9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.3*
>
> This is why the last link from the union-build package is broken, it trie=
s to point to libexpat.so.1.8.1 (the previous version, but in the newer ver=
sion's directory).

Grafting is a pretty basic process: in this case it replaces occurrences
of /gnu/store/=E2=80=A6-expat-2.4.1 with /gnu/store/=E2=80=A6-expat-2.4.3, =
nothing more.
It cannot guess that libexpat.so.1.8.1 was renamed to libexpat.so.1.8.3
or anything like that.

Is it a problem?  Normally no, because users of shared libraries don=E2=80=
=99t
refer to libraries by their fully-qualified name:

--8<---------------cut here---------------start------------->8---
$ objdump -x $(guix build dbus-glib)/bin/dbus-binding-tool|grep NEED.*expat
  NEEDED               libexpat.so.1
$ objdump -x  $(guix build dbus-glib)/bin/dbus-binding-tool|grep RUNPATH
  RUNPATH              /gnu/store/wwmxxlmlhwljn39z0gsj6iai3zk67a2g-dbus-gli=
b-0.110/lib:/gnu/store/5s6iz5f777rh23q4kv8gvqrsyy61cbjh-dbus-1.12.20/lib:/g=
nu/store/s0w7szfsajdy6cnrz2w7z4h5spyl4aaj-expat-2.4.1/lib:/gnu/store/2fk1gz=
2s7ppdicynscra9b19byrrr866-glibc-2.33/lib:/gnu/store/90lbavffg0csrf208nw0ay=
j1bz5knl47-gcc-10.3.0-lib/lib:/gnu/store/qqs98rxwjrji6aaf6dqwp7q4m545g2sn-g=
lib-2.70.0/lib:/gnu/store/90lbavffg0csrf208nw0ayj1bz5knl47-gcc-10.3.0-lib/l=
ib/gcc/x86_64-unknown-linux-gnu/10.3.0/../../..
--8<---------------cut here---------------end--------------->8---

Likewise, =E2=80=98etc/ld.so.cache=E2=80=99 contains a reference to =E2=80=
=98libexpat.so.1=E2=80=99, not
to =E2=80=98libexpat.so.1.8.1=E2=80=99.

Does that make sense?  Or am I overlooking something?

Thanks,
Ludo=E2=80=99.

Information forwarded to bug-guix@HIDDEN:
bug#53406; Package guix. Full text available.

Message received at 53406 <at> debbugs.gnu.org:

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To: "53406 <at> debbugs.gnu.org" <53406 <at> debbugs.gnu.org>
From: John Kehayias <john.kehayias@HIDDEN>
Subject: Re: union-build incorrectly handles grafts
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I haven't had the chance to see what is happening inside union-build yet, b=
ut did confirm that propagating expat/fixed instead of expat does not have =
the same problem.

I tried with

(define fontconfig-fixed
  (package
    (inherit fontconfig)
    (propagated-inputs
     (modify-inputs (package-propagated-inputs fontconfig)
       (replace "expat" (@@ (gnu packages xml) expat/fixed))))))

and then (fhs-union (list fontconfig-fixed)) did not have any broken links =
trying to go to the wrong version. Using this also works around my original=
 problem of a multi-arch union build having collisions (so that seems to st=
em from whatever is happening here).

Information forwarded to bug-guix@HIDDEN:
bug#53406; Package guix. Full text available.

Message received at 53406 <at> debbugs.gnu.org:

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To: "53406 <at> debbugs.gnu.org" <53406 <at> debbugs.gnu.org>
From: John Kehayias <john.kehayias@HIDDEN>
Subject: Re: union-build incorrectly handles grafts
Message-ID: <_yV8VwaAQw22nEoGIlm6a7oqlUMtT8nqReMHaxvyjLlwSqLgP5dkF0ro1t88lH9WtZt1jZv7zZXvlK2dkf46dSfbQnolV8IcbGcAl3vH8g4=@protonmail.com>
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Oh, and in the share/doc directory of the union:

lrwxrwxrwx 1 root root 71 Dec 31  1969 expat -> /gnu/store/2q8wwhd3prib0swk=
y68rbx9hl0xxs6hf-expat-2.4.3/share/doc/expat/
lrwxrwxrwx 1 root root 77 Dec 31  1969 expat-2.4.1 -> /gnu/store/2q8wwhd3pr=
ib0swky68rbx9hl0xxs6hf-expat-2.4.3/share/doc/expat-2.4.1

Second link broken, first link correct, both to the replacement (2.4.3 vers=
ion) store directory.

Information forwarded to bug-guix@HIDDEN:
bug#53406; Package guix. Full text available.

Message received at submit <at> debbugs.gnu.org:

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To: "bug-guix@HIDDEN" <bug-guix@HIDDEN>
From: John Kehayias <john.kehayias@HIDDEN>
Subject: union-build incorrectly handles grafts
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This is a multi-part message in MIME format.

--b1_crfdlnRpcNssz3PIPCQ2mGhCaBpv5BWXe4AR8MgDnQ
Content-Type: text/plain; charset=utf-8
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Hello Guix,

Stumbled upon a mysterious problem today with grafts. Let me report what I =
see and how to reproduce it:

I'm attaching a minimal working example of the problem, namely using union-=
build creates the wrong symlink when a package has a propagated input that =
has a replacement. At least that seems to be the key ingredients. (Note the=
 code originally came from another channel, so I left the header intact. Th=
e union-build looks the same as in e.g. python-pyqt+qscintilla though.)

It looks like a link is made to a wrong (i.e. previous) version library. It=
 is pointing to the replacement package in the store, but trying to use the=
 previous name.

If I run the attached file with guix build -f graft-test.scm and look at li=
bexpat in the created package with, e.g.

ls -la $(guix build -f graft-test.scm)/lib/libexpat*

I get

lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7dw=
y2h55gs-fhs-union-0.0/lib/libexpat.la -> /gnu/store/2q8wwhd3prib0swky68rbx9=
hl0xxs6hf-expat-2.4.3/lib/libexpat.la*
lrwxrwxrwx 1 root root 71 Dec 31  1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7dw=
y2h55gs-fhs-union-0.0/lib/libexpat.so -> /gnu/store/2q8wwhd3prib0swky68rbx9=
hl0xxs6hf-expat-2.4.3/lib/libexpat.so*
lrwxrwxrwx 1 root root 73 Dec 31  1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7dw=
y2h55gs-fhs-union-0.0/lib/libexpat.so.1 -> /gnu/store/2q8wwhd3prib0swky68rb=
x9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1*
lrwxrwxrwx 1 root root 77 Dec 31  1969 /gnu/store/a3ixqfx1cfjgbz5gb925fv7dw=
y2h55gs-fhs-union-0.0/lib/libexpat.so.1.8.1 -> /gnu/store/2q8wwhd3prib0swky=
68rbx9hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.1

Note that the last link is broken: looking at this expat library (2.4.3, th=
e replacement) it has

-r-xr-xr-x 1 root root  961 Dec 31  1969 /gnu/store/2q8wwhd3prib0swky68rbx9=
hl0xxs6hf-expat-2.4.3/lib/libexpat.la*
lrwxrwxrwx 1 root root   17 Dec 31  1969 /gnu/store/2q8wwhd3prib0swky68rbx9=
hl0xxs6hf-expat-2.4.3/lib/libexpat.so -> libexpat.so.1.8.3*
lrwxrwxrwx 1 root root   17 Dec 31  1969 /gnu/store/2q8wwhd3prib0swky68rbx9=
hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1 -> libexpat.so.1.8.3*
-r-xr-xr-x 2 root root 191K Dec 31  1969 /gnu/store/2q8wwhd3prib0swky68rbx9=
hl0xxs6hf-expat-2.4.3/lib/libexpat.so.1.8.3*

This is why the last link from the union-build package is broken, it tries =
to point to libexpat.so.1.8.1 (the previous version, but in the newer versi=
on's directory).

There are no error or warnings that I saw in building the package or in a p=
rofile (e.g. guix shell). I put in an output in the builder to see what dir=
ectories were passed to the union-build, giving me

directories: (/gnu/store/d0xskl9xjb0z6miaf87xszi8iq6h8sqs-apr-util-1.6.1 /g=
nu/store/iwcw80p8lkqsqbvchjvypvl06qlbjc3d-expat-2.4.1)

So the original expat propagated-input store directory is passed to the bui=
lder (as expected), but in the end it does use the replacement version. Jus=
t with a version number gone wrong in a library link.

I came across this actually when combining both x86_64 and i686 into a sing=
le profile. There it would error on a conflict between file and directory, =
but in the lib/cmake of expat, again something with different version numbe=
rs appearing but between x86_64 and i686. I don't have an example of that h=
andy right now, but it sent me in the direction of seeing why expat was com=
ing up, when I came across this (I'm guessing leading to the problem I saw)=
.

In case it is relevant, I did notice other packages have had explicit repla=
cements used in propagated inputs previously, like in https://git.savannah.=
gnu.org/cgit/guix.git/commit/?id=3Dc5df560fd3762c0dbe99562f52223c73d445e597=
 expat is propagated by fontconfig and apr-util, possibly other places? A b=
it tricky to search with the expat license and all.

This was on commit: e415a73d2c11e43f4db3b797ed73ab6ebcc336e0 My original pr=
oblem (conflict in x86_64 and i686 union) happened after the expat replacem=
ent commit, 2045852b096131a714409aa0cc4fe17938f60b15 which was my first clu=
e.

I hope that is helpful in reproducing and finding out what is happening. So=
mething to do with union-build I guess, but it is very late here right now =
so I hope this all made sense. Happy to help investigate and debug.

John
--b1_crfdlnRpcNssz3PIPCQ2mGhCaBpv5BWXe4AR8MgDnQ
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--b1_crfdlnRpcNssz3PIPCQ2mGhCaBpv5BWXe4AR8MgDnQ--

Acknowledgement sent to John Kehayias <john.kehayias@HIDDEN>:
New bug report received and forwarded. Copy sent to bug-guix@HIDDEN. Full text available.

Report forwarded to bug-guix@HIDDEN:
bug#53406; Package guix. Full text available.

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Last modified: Sun, 15 Oct 2023 20:00:01 UTC

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Copyright (C) 1999 Darren O. Benham, 1997 nCipher Corporation Ltd, 1994-97 Ian Jackson.