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Subject: bug#73962: Seemingly unecessary package duplication in home and system profiles
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--=_2012bda7e885cd44e0f65816d22aa05e
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When running either `guix size $(realpath ~/.guix-home/profile)` or
`guix size $(realpath /run/current-system/profile)` on my system, I
could see that multiple packages have "duplicates", whose hash doesn't
match. After investigation, I discovered that for all the ones I've
checked, the hash differs simply because compression used for some files
in the derivation output (such as manpages, for example). Some examples
are:
bash-minimal-5.1.16
bzip2-1.0.8
cairo-1.18.0
coreutils-9.1
dbus-1.15.8
extension.json
ffmpeg-6.1.1
gawk-5.3.0
gcc-11.4.0-lib
git-2.46.0
glib-2.78.0
grep-3.11
gtk+-2.24.33
gtk+-3.24.41
gtk+-3.24.41-bin
gzip-1.13
harfbuzz-8.3.0
libffi-3.4.4
libnotify-0.8.3
librsvg-2.56.4
libxkbcommon-1.6.0
mesa-24.0.4
python-3.10.7
python-3.10.7-tk
python-pyparsing-3.0.6
qtwayland-5.15.10
tar-1.34
wayland-1.22.0
xz-5.4.5
zlib-1.3
Running guix challenge over these packages also doesn't detect any kind
of reproducibility issues. Is there any reason for the package
duplication?
Thanks in advance,
Luis Guilherme Coelho
--=_2012bda7e885cd44e0f65816d22aa05e
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<p>When running either `guix size $(realpath ~/.guix-home/profile)` or `gui=
x size $(realpath /run/current-system/profile)` on my system, I could see t=
hat multiple packages have "duplicates", whose hash doesn't match. After in=
vestigation, I discovered that for all the ones I've checked, the hash diff=
ers simply because compression used for some files in the derivation output=
(such as manpages, for example). Some examples are:<br /><br />bash-minima=
l-5.1.16<br />bzip2-1.0.8<br />cairo-1.18.0<br />coreutils-9.1<br />dbus-1.=
15.8<br />extension.json<br />ffmpeg-6.1.1<br />gawk-5.3.0<br />gcc-11.4.0-=
lib<br />git-2.46.0<br />glib-2.78.0<br />grep-3.11<br />gtk+-2.24.33<br />=
gtk+-3.24.41<br />gtk+-3.24.41-bin<br />gzip-1.13<br />harfbuzz-8.3.0<br />=
libffi-3.4.4<br />libnotify-0.8.3<br />librsvg-2.56.4<br />libxkbcommon-1.6=
=2E0<br />mesa-24.0.4<br />python-3.10.7<br />python-3.10.7-tk<br />python-=
pyparsing-3.0.6<br />qtwayland-5.15.10<br />tar-1.34<br />wayland-1.22.0<br=
/>xz-5.4.5<br />zlib-1.3<br /><br />Running guix challenge over these pack=
ages also doesn't detect any kind of reproducibility issues. Is there any r=
eason for the package duplication?<br /><br />Thanks in advance,<br />Luis =
Guilherme Coelho</p>
</body></html>
--=_2012bda7e885cd44e0f65816d22aa05e--
Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) Content-Type: text/plain; charset=utf-8 X-Loop: help-debbugs@HIDDEN From: help-debbugs@HIDDEN (GNU bug Tracking System) To: lgcoelho@HIDDEN Subject: bug#73962: Acknowledgement (Seemingly unecessary package duplication in home and system profiles) Message-ID: <handler.73962.B.172968377429297.ack <at> debbugs.gnu.org> References: <3e5e77af52333a8d09ea63c5bb4515d4@HIDDEN> X-Gnu-PR-Message: ack 73962 X-Gnu-PR-Package: guix Reply-To: 73962 <at> debbugs.gnu.org Date: Wed, 23 Oct 2024 11:43:02 +0000 Thank you for filing a new bug report with debbugs.gnu.org. This is an automatically generated reply to let you know your message has been received. Your message is being forwarded to the package maintainers and other interested parties for their attention; they will reply in due course. Your message has been sent to the package maintainer(s): bug-guix@HIDDEN If you wish to submit further information on this problem, please send it to 73962 <at> debbugs.gnu.org. Please do not send mail to help-debbugs@HIDDEN unless you wish to report a problem with the Bug-tracking system. --=20 73962: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D73962 GNU Bug Tracking System Contact help-debbugs@HIDDEN with problems
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Subject: bug#73962: More info regarding the issue
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Still on the same matter, while some packages indeed have the same
closure e.g.
_--8<---------------cut here---------------start------------->8---_
+radio at buer in ~ > guix size
/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8
store item total
self
/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39 40.5
38.8 50.5%
/gnu/store/zzpbp6rr43smwxzvzd4qd317z5j7qblj-gcc-11.4.0-lib 75.6
35.0 45.5%
/gnu/store/87z5k84hxbqs87plgwsl2v6a4j7m3k7h-bash-static-5.1.16 1.7
1.7 2.2%
/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16 41.5
1.0 1.3%
/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8 77.0
0.4 0.5%
total: 77.0 MiB
+radio at buer in ~ > guix size
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8
store item total
self
/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39 40.5
38.8 50.5%
/gnu/store/zzpbp6rr43smwxzvzd4qd317z5j7qblj-gcc-11.4.0-lib 75.6
35.0 45.5%
/gnu/store/87z5k84hxbqs87plgwsl2v6a4j7m3k7h-bash-static-5.1.16 1.7
1.7 2.2%
/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16 41.5
1.0 1.3%
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8 76.9
0.4 0.5%
total: 76.9 MiB
+radio at buer in ~ > diff -r
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8
/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8
Only in
/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1:
bzcmp.1.gz
Only in
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1:
bzcmp.1.zst
Only in
/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1:
bzdiff.1.gz
Only in
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1:
bzdiff.1.zst
Only in
/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1:
bzegrep.1.gz
Only in
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1:
bzegrep.1.zst
Only in
/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1:
bzfgrep.1.gz
Only in
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1:
bzfgrep.1.zst
Only in
/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1:
bzgrep.1.gz
Only in
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1:
bzgrep.1.zst
Only in
/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1:
bzip2.1.gz
Only in
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1:
bzip2.1.zst
Only in
/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1:
bzless.1.gz
Only in
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1:
bzless.1.zst
Only in
/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1:
bzmore.1.gz
Only in
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1:
bzmore.1.zst
_--8<---------------cut here---------------end--------------->8---_
many others that have different closures e.g.
_--8<---------------cut here---------------start------------->8---_
+radio at buer in ~ > guix size
/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16
store item total
self
/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39 40.5
38.8 93.5%
/gnu/store/87z5k84hxbqs87plgwsl2v6a4j7m3k7h-bash-static-5.1.16 1.7
1.7 4.1%
/gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16 41.5
1.0 2.4%
total: 41.5 MiB
+radio at buer in ~ > guix size
/gnu/store/x47i4yafqxdav838aykda9c2hhhn9sa4-bash-minimal-5.1.16
store item total
self
/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39 40.5
38.8 50.7%
/gnu/store/zzpbp6rr43smwxzvzd4qd317z5j7qblj-gcc-11.4.0-lib 75.6
35.0 45.8%
/gnu/store/87z5k84hxbqs87plgwsl2v6a4j7m3k7h-bash-static-5.1.16 1.7
1.7 2.2%
/gnu/store/x47i4yafqxdav838aykda9c2hhhn9sa4-bash-minimal-5.1.16 76.5
1.0 1.3%
total: 76.5 MiB
_--8<---------------cut here---------------end--------------->8---_
which is more reasonable to justify the difference in the package
derivation output contents. But still, where does that dependency on
gcc-lib comes from? And if one of them is a "more complete" version of
the other, Why are both packages installed into the profile?
Thanks in advance,
Luis Guilherme Coelho
--=_8f79d7a16b943ea2535a3aae923c7832
Content-Transfer-Encoding: quoted-printable
Content-Type: text/html; charset=UTF-8
<html><head><meta http-equiv=3D"Content-Type" content=3D"text/html; charset=
=3DUTF-8" /></head><body style=3D'font-size: 10pt; font-family: Verdana,Gen=
eva,sans-serif'>
<p>Still on the same matter, while some packages indeed have the same closu=
re e.g.</p>
<pre style=3D"color: #e8e6e3;" data-darkreader-inline-color=3D""><em>--8<=
;---------------cut here---------------start------------->8---</em></pre>
<pre style=3D"color: #e8e6e3;" data-darkreader-inline-color=3D"">+radio at =
buer in ~ > guix size /gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-=
1.0.8<br />store item &nbs=
p; &n=
bsp; total &=
nbsp;self<br />/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39  =
; 40.5 38.8 50.=
5%<br />/gnu/store/zzpbp6rr43smwxzvzd4qd317z5j7qblj-gcc-11.4.0-lib &=
nbsp; 75.6 35.0 45.5%<br />/gnu/stor=
e/87z5k84hxbqs87plgwsl2v6a4j7m3k7h-bash-static-5.1.16 =
1.7 1.7 2.2%<br />/gnu/store/3jhfhxdf6v5ms10x5zmnl166d=
h3yhbr1-bash-minimal-5.1.16 41.5 1.0 1.3=
%<br />/gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8  =
; 77.0 0.4 0.5%<br />total=
: 77.0 MiB<br />+radio at buer in ~ > guix size /gnu/store/59kd6jyvrq8pr=
l9mbnh3g8d22rc1dbwv-bzip2-1.0.8<br />store item =
&nbs=
p; &n=
bsp; total self<br />/gnu/store/zvlp3n8iwa1svxmwv4q22pv=
1pb1c9pjq-glibc-2.39 40.5 &=
nbsp; 38.8 50.5%<br />/gnu/store/zzpbp6rr43smwxzvzd4qd317z5j7qb=
lj-gcc-11.4.0-lib 75.6 35.0 =
45.5%<br />/gnu/store/87z5k84hxbqs87plgwsl2v6a4j7m3k7h-bash-static-5.=
1.16 1.7 1.7 2.2%<br />/gnu/store=
/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16 41.5 &n=
bsp; 1.0 1.3%<br />/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbw=
v-bzip2-1.0.8 76.9 =
0.4 0.5%<br />total: 76.9 MiB<br />+radio at buer in ~ > diff -r =
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8 /gnu/store/56aq6sdx=
35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8<br />Only in /gnu/store/56aq6sdx35f7rs=
xq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1: bzcmp.1.gz<br />Only in /gnu=
/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1: bzcmp.1=
=2Ezst<br />Only in /gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8=
/share/man/man1: bzdiff.1.gz<br />Only in /gnu/store/59kd6jyvrq8prl9mbnh3g8=
d22rc1dbwv-bzip2-1.0.8/share/man/man1: bzdiff.1.zst<br />Only in /gnu/store=
/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1: bzegrep.1.gz<=
br />Only in /gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/=
man/man1: bzegrep.1.zst<br />Only in /gnu/store/56aq6sdx35f7rsxq8jq9ypafk0d=
hd3p3-bzip2-1.0.8/share/man/man1: bzfgrep.1.gz<br />Only in /gnu/store/59kd=
6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1: bzfgrep.1.zst<br /=
>Only in /gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/=
man1: bzgrep.1.gz<br />Only in /gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-=
bzip2-1.0.8/share/man/man1: bzgrep.1.zst<br />Only in /gnu/store/56aq6sdx35=
f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1: bzip2.1.gz<br />Only in =
/gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1: bzi=
p2.1.zst<br />Only in /gnu/store/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0=
=2E8/share/man/man1: bzless.1.gz<br />Only in /gnu/store/59kd6jyvrq8prl9mbn=
h3g8d22rc1dbwv-bzip2-1.0.8/share/man/man1: bzless.1.zst<br />Only in /gnu/s=
tore/56aq6sdx35f7rsxq8jq9ypafk0dhd3p3-bzip2-1.0.8/share/man/man1: bzmore.1.=
gz<br />Only in /gnu/store/59kd6jyvrq8prl9mbnh3g8d22rc1dbwv-bzip2-1.0.8/sha=
re/man/man1: bzmore.1.zst</pre>
<pre style=3D"color: #e8e6e3;" data-darkreader-inline-color=3D""><em>--8<=
;---------------cut here---------------end--------------->8---</em>
</pre>
<pre style=3D"color: #e8e6e3;" data-darkreader-inline-color=3D""><br />many=
others that have different closures e.g.</pre>
<p><span style=3D"font-family: 'andale mono', monospace;"><em>--8<------=
---------cut here---------------start------------->8---</em></span></p>
<pre style=3D"color: #e8e6e3;" data-darkreader-inline-color=3D"">+radio at =
buer in ~ > guix size /gnu/store/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-m=
inimal-5.1.16<br />store item &nb=
sp; &=
nbsp; total =
self<br />/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.=
39 40.5 38.8 &=
nbsp;93.5%<br />/gnu/store/87z5k84hxbqs87plgwsl2v6a4j7m3k7h-bash-static-5.1=
=2E16 1.7 1.7 4.1%<br />/gnu/stor=
e/3jhfhxdf6v5ms10x5zmnl166dh3yhbr1-bash-minimal-5.1.16 41.5 &=
nbsp; 1.0 2.4%<br />total: 41.5 MiB<br />+radio at buer in ~ =
> guix size /gnu/store/x47i4yafqxdav838aykda9c2hhhn9sa4-bash-minimal-5.1=
=2E16<br />store item &nbs=
p; &n=
bsp; total &=
nbsp;self<br />/gnu/store/zvlp3n8iwa1svxmwv4q22pv1pb1c9pjq-glibc-2.39  =
; 40.5 38.8 50.=
7%<br />/gnu/store/zzpbp6rr43smwxzvzd4qd317z5j7qblj-gcc-11.4.0-lib &=
nbsp; 75.6 35.0 45.8%<br />/gnu/stor=
e/87z5k84hxbqs87plgwsl2v6a4j7m3k7h-bash-static-5.1.16 =
1.7 1.7 2.2%<br />/gnu/store/x47i4yafqxdav838aykda9c2h=
hhn9sa4-bash-minimal-5.1.16 76.5 1.0 1.3=
%<br />total: 76.5 MiB</pre>
<p><span style=3D"font-family: 'andale mono', monospace;"><em>--8<------=
---------cut here---------------end--------------->8---</em> </span=
></p>
<pre style=3D"color: #e8e6e3;" data-darkreader-inline-color=3D"">which is m=
ore reasonable to justify the difference in the package derivation output c=
ontents. But still, where does that dependency on gcc-lib comes from? And i=
f one of them is a "more complete" version of the other, Why are both packa=
ges installed into the profile?</pre>
<p><br />Thanks in advance,<br />Luis Guilherme Coelho</p>
</body></html>
--=_8f79d7a16b943ea2535a3aae923c7832--
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997 nCipher Corporation Ltd,
1994-97 Ian Jackson.